RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 SDCCAG3Q96C92 435 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 CATSPER2Q96P56 530 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 TMTC3Q6ZXV5 915 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 DHTKD1Q96HY7 919 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-220ENST00000641603 TRAPPC9Q96Q05 1148 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 KCNA4P22459 653 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 TBCCQ15814 346 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 TCERG1LQ5VWI1 586 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 CTAGE3PQ8IX95 158 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 OGFOD1Q8N543 542 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 SLF1Q9BQI6 1058 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 O00370 1275 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 KRT15P19012 456 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 PPP2R2AP63151 447 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 ANO5Q75V66 913 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 PASD1Q8IV76 773 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 MAP7D3Q8IWC1 876 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 HIC2Q96JB3 615 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 YIPF3Q9GZM5 350 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 KCNJ18B7U540 433 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 SASH1O94885 1247 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 KCNJ12Q14500 433 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 SLC39A14Q15043 492 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 BHMT2Q9H2M3 363 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 POLKQ9UBT6 870 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 KCNG1Q9UIX4 513 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 CDK13Q14004 1512 aaKnown RBP5.11□□□□□ -1.59
SCN1A-220ENST00000641603 SYCP2Q9BX26 1530 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 MMEP08473 750 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 GALNT17Q6IS24 598 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 CSGALNACT2Q8N6G5 542 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 MORC4Q8TE76 937 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 SNX29Q8TEQ0 813 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 AGTP01019 485 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 DTHD1Q6ZMT9 781 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 ARHGAP22Q7Z5H3 698 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 KLHL23Q8NBE8 558 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 TESK2Q96S53 571 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 MIF4GDA9UHW6 222 aaKnown RBP5.11□□□□□ -1.59
SCN1A-220ENST00000641603 CYP2E1P05181 493 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-220ENST00000641603 E2F5Q15329 346 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 UBE3BQ7Z3V4 1068 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 SRRM1Q8IYB3 904 aaKnown RBP5.11□□□□□ -1.59
SCN1A-220ENST00000641603 DHX58Q96C10 678 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 SLC26A6Q9BXS9 759 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 CABP2Q9NPB3 220 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 CIDEBQ9UHD4 219 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 NVLO15381 856 aaKnown RBP5.11□□□□□ -1.59
SCN1A-220ENST00000641603 SEC31AO94979 1220 aaKnown RBP5.11□□□□□ -1.59
SCN1A-220ENST00000641603 ATP1A2P50993 1020 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 DDR1Q08345 913 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 PSMD2Q13200 908 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 KRT79Q5XKE5 535 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 KRT39Q6A163 491 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 OPTNQ96CV9 577 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 VCPKMTQ9H867 229 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 PAPOLBQ9NRJ5 636 aaKnown RBP5.11□□□□□ -1.59
SCN1A-220ENST00000641603 MAGEA13PA6NCF6 341 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 E2F6O75461 281 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 HEXIM1O94992 359 aaKnown RBP5.11□□□□□ -1.59
SCN1A-220ENST00000641603 SLC5A1P13866 664 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 LINS1Q8NG48 757 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 ARL2BPQ9Y2Y0 163 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 KRIT1O00522 736 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 TXNDC9O14530 226 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 MMP14P50281 582 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 ITIH4Q14624 930 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 TTC6Q86TZ1 520 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 NECAB1Q8N987 351 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 SLITRK6Q9H5Y7 841 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 SH2D4AQ9H788 454 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 RWDD2AQ9UIY3 292 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 SBNO1A3KN83 1393 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 VAMP4O75379 141 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 HNRNPH1P31943 449 aaKnown RBP5.1□□□□□ -1.59
SCN1A-220ENST00000641603 DNA2P51530 1060 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 NDUFA5Q16718 116 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 SLC24A3Q9HC58 644 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 C6orf50Q9HD87 102 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 ZFATQ9P243 1243 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 A0A1W2PQC6 194 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 BCRP11274 1271 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 ROR2Q01974 943 aaKnown RBP5.1□□□□□ -1.59
SCN1A-220ENST00000641603 KLHL30Q0D2K2 578 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 AP1B1Q10567 949 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 PDE1CQ14123 709 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-220ENST00000641603 GNPTABQ3T906 1256 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 SV2BQ7L1I2 683 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 SLC35F6Q8N357 371 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 KCNH5Q8NCM2 988 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 ASIC3Q9UHC3 531 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 KDM5CP41229 1560 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 SLC27A2O14975 620 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 CALUO43852 315 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-220ENST00000641603 MDH1P40925 334 aaKnown RBP5.1□□□□□ -1.59
SCN1A-220ENST00000641603 SERPINB8P50452 374 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 CCT2P78371 535 aaKnown RBP5.1□□□□□ -1.59
SCN1A-220ENST00000641603 TMEM259Q4ZIN3 620 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 SKAP1Q86WV1 359 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 MICU3Q86XE3 530 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms