RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 NMIQ13287 307 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-217ENST00000637988 GCKRQ14397 625 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 POSTNQ15063 836 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 TBCCQ15814 346 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 C7orf31Q8N865 590 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 GDAP1Q8TB36 358 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 RBSNQ9H1K0 784 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 RAB20Q9NX57 234 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 MAP3K20Q9NYL2 800 aaKnown RBP6.73□□□□□ -1.33
SCN1A-217ENST00000637988 ZNF212Q9UDV6 495 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 SRPRBQ9Y5M8 271 aaKnown RBP6.73□□□□□ -1.33
SCN1A-217ENST00000637988 CLGNO14967 610 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 GBP1P32455 592 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 EIF4A2Q14240 407 aaKnown RBP6.73□□□□□ -1.33
SCN1A-217ENST00000637988 ARL13BQ3SXY8 428 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 PGBD3Q8N328 593 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 KRT12Q99456 494 aa6.73□□□□□ -1.33
SCN1A-217ENST00000637988 MYO3BQ8WXR4 1341 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 ARAP1Q96P48 1450 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 EYA2O00167 538 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 SEMA3EO15041 775 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 BBOX1O75936 387 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 CA4P22748 312 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 PTGDRQ13258 359 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 SLC9C1Q4G0N8 1177 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 GPATCH4Q5T3I0 446 aaKnown RBP6.72□□□□□ -1.33
SCN1A-217ENST00000637988 SMC5Q8IY18 1101 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 MICALL1Q8N3F8 863 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 MAST1Q9Y2H9 1570 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.72□□□□□ -1.33
SCN1A-217ENST00000637988 TAF5LO75529 589 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 ZSCAN22P10073 491 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-217ENST00000637988 PDE6CP51160 858 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 DRP2Q13474 957 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 CEP85LQ5SZL2 805 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 ARHGAP24Q8N264 748 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 OPTNQ96CV9 577 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 LARP6Q9BRS8 491 aaKnown RBP6.72□□□□□ -1.33
SCN1A-217ENST00000637988 RNF181Q9P0P0 153 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 ANGEL1Q9UNK9 670 aaKnown RBP6.72□□□□□ -1.33
SCN1A-217ENST00000637988 THRAP3Q9Y2W1 955 aaKnown RBP6.72□□□□□ -1.33
SCN1A-217ENST00000637988 PHLPP2Q6ZVD8 1323 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 MED7O43513 233 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 TUBB4AP04350 444 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 ARHGAP4P98171 946 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 ATP8B2P98198 1209 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 DNAJC21Q5F1R6 531 aaKnown RBP6.72□□□□□ -1.33
SCN1A-217ENST00000637988 CCDC17Q96LX7 622 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 INO80BQ9C086 356 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-217ENST00000637988 SBNO1A3KN83 1393 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 RNF8O76064 485 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 TBC1D8O95759 1140 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 F13A1P00488 732 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 STMN1P16949 149 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 INPP1P49441 399 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 CPLX4Q7Z7G2 160 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 TRIM45Q9H8W5 580 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-217ENST00000637988 COPB2P35606 906 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 SFSWAPQ12872 951 aaKnown RBP6.72□□□□□ -1.33
SCN1A-217ENST00000637988 APPBP2Q92624 585 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 COPRSQ9NQ92 184 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 LRWD1Q9UFC0 647 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 PSDA5PKW4 1024 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-217ENST00000637988 TBC1D8BQ0IIM8 1120 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 E2F5Q15329 346 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 AOC3Q16853 763 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 MAP7D3Q8IWC1 876 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 FPGT-TNNI3KV9GXZ4 949 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 CFAP43Q8NDM7 1665 aa6.72□□□□□ -1.33
SCN1A-217ENST00000637988 A0A1B0GVL5 298 aa6.71□□□□□ -1.33
SCN1A-217ENST00000637988 MIPOL1Q8TD10 442 aa6.71□□□□□ -1.33
SCN1A-217ENST00000637988 GRK7Q8WTQ7 553 aa6.71□□□□□ -1.33
SCN1A-217ENST00000637988 ARHGEF1Q92888 912 aaKnown RBP6.71□□□□□ -1.33
SCN1A-217ENST00000637988 HDAC11Q96DB2 347 aa6.71□□□□□ -1.33
SCN1A-217ENST00000637988 IQCDQ96DY2 449 aa6.71□□□□□ -1.33
SCN1A-217ENST00000637988 ASIC3Q9UHC3 531 aa6.71□□□□□ -1.33
SCN1A-217ENST00000637988 EIF4E1BA6NMX2 242 aaKnown RBP6.71□□□□□ -1.33
SCN1A-217ENST00000637988 XRCC5P13010 732 aaKnown RBP6.71□□□□□ -1.33
SCN1A-217ENST00000637988 PTK2BQ14289 1009 aa6.71□□□□□ -1.33
SCN1A-217ENST00000637988 DDX50Q9BQ39 737 aaKnown RBP6.71□□□□□ -1.33
SCN1A-217ENST00000637988 SLC38A10Q9HBR0 1119 aa6.71□□□□□ -1.33
SCN1A-217ENST00000637988 PLCB1Q9NQ66 1216 aa6.71□□□□□ -1.33
SCN1A-217ENST00000637988 BSDC1Q9NW68 430 aaPredicted RBP6.71□□□□□ -1.33
SCN1A-217ENST00000637988 CTTNBP2NLQ9P2B4 639 aa6.71□□□□□ -1.33
SCN1A-217ENST00000637988 DDX25Q9UHL0 483 aaKnown RBP6.71□□□□□ -1.33
SCN1A-217ENST00000637988 HNRNPCL2B2RXH8 293 aa6.71□□□□□ -1.33
SCN1A-217ENST00000637988 INO80B-WBP1J3KQ70 363 aa6.71□□□□□ -1.33
SCN1A-217ENST00000637988 HNRNPCL1O60812 293 aaKnown RBP6.71□□□□□ -1.33
SCN1A-217ENST00000637988 MOCS3O95396 460 aa6.71□□□□□ -1.33
SCN1A-217ENST00000637988 ACTN1P12814 892 aa6.71□□□□□ -1.33
SCN1A-217ENST00000637988 DDX5P17844 614 aaKnown RBP6.71□□□□□ -1.33
SCN1A-217ENST00000637988 SURF1Q15526 300 aa6.71□□□□□ -1.33
SCN1A-217ENST00000637988 PRR16Q569H4 304 aa6.71□□□□□ -1.33
SCN1A-217ENST00000637988 TTBK2Q6IQ55 1244 aa6.71□□□□□ -1.33
SCN1A-217ENST00000637988 PPP1R2P3Q6NXS1 205 aa6.71□□□□□ -1.33
SCN1A-217ENST00000637988 CEP120Q8N960 986 aa6.71□□□□□ -1.33
SCN1A-217ENST00000637988 ATP6V1E2Q96A05 226 aa6.71□□□□□ -1.33
SCN1A-217ENST00000637988 LRRC4Q9HBW1 653 aa6.71□□□□□ -1.33
SCN1A-217ENST00000637988 ORC6Q9Y5N6 252 aa6.71□□□□□ -1.33
SCN1A-217ENST00000637988 KDRP35968 1356 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms