RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 PHF6Q8IWS0 365 aaKnown RBP eCLIP19.7■□□□□ 0.74
CLN3-255ENST00000637100 PRPF38AQ8NAV1 312 aaKnown RBP19.7■□□□□ 0.74
CLN3-255ENST00000637100 OSBP2Q969R2 916 aa19.7■□□□□ 0.74
CLN3-255ENST00000637100 CDX2Q99626 313 aaPredicted RBP19.7■□□□□ 0.74
CLN3-255ENST00000637100 SLF1Q9BQI6 1058 aa19.7■□□□□ 0.74
CLN3-255ENST00000637100 COL25A1Q9BXS0 654 aaPredicted RBP19.7■□□□□ 0.74
CLN3-255ENST00000637100 ECHDC1Q9NTX5 307 aa19.7■□□□□ 0.74
CLN3-255ENST00000637100 RIPK3Q9Y572 518 aa19.7■□□□□ 0.74
CLN3-255ENST00000637100 TMEM265A0A087WTH1 108 aa19.69■□□□□ 0.74
CLN3-255ENST00000637100 PGK1P00558 417 aa19.69■□□□□ 0.74
CLN3-255ENST00000637100 CLTBP09497 229 aa19.69■□□□□ 0.74
CLN3-255ENST00000637100 NKX3-2P78367 333 aa19.69■□□□□ 0.74
CLN3-255ENST00000637100 TTYH1Q9H313 450 aaPredicted RBP19.69■□□□□ 0.74
CLN3-255ENST00000637100 NDUFB10O96000 172 aa19.68■□□□□ 0.74
CLN3-255ENST00000637100 CST5P28325 142 aaPredicted RBP19.68■□□□□ 0.74
CLN3-255ENST00000637100 EPHB4P54760 987 aa19.68■□□□□ 0.74
CLN3-255ENST00000637100 APPBP2Q92624 585 aa19.68■□□□□ 0.74
CLN3-255ENST00000637100 FGD4Q96M96 766 aa19.68■□□□□ 0.74
CLN3-255ENST00000637100 DCTPP1Q9H773 170 aa19.68■□□□□ 0.74
CLN3-255ENST00000637100 PRDM5Q9NQX1 630 aaPredicted RBP19.68■□□□□ 0.74
CLN3-255ENST00000637100 MOXD2PA6NHM9 499 aa19.67■□□□□ 0.74
CLN3-255ENST00000637100 CDK7P50613 346 aa19.67■□□□□ 0.74
CLN3-255ENST00000637100 ACLYP53396 1101 aa19.67■□□□□ 0.74
CLN3-255ENST00000637100 FAAP100Q0VG06 881 aa19.67■□□□□ 0.74
CLN3-255ENST00000637100 NUP88Q99567 741 aaPredicted RBP19.67■□□□□ 0.74
CLN3-255ENST00000637100 SLC38A10Q9HBR0 1119 aa19.67■□□□□ 0.74
CLN3-255ENST00000637100 EPB41L4AQ9HCS5 686 aaPredicted RBP19.67■□□□□ 0.74
CLN3-255ENST00000637100 FAM184BQ9ULE4 1060 aa19.67■□□□□ 0.74
CLN3-255ENST00000637100 CNPY2Q9Y2B0 182 aa19.67■□□□□ 0.74
CLN3-255ENST00000637100 SMARCA5O60264 1052 aaPredicted RBP19.66■□□□□ 0.74
CLN3-255ENST00000637100 DUSP11O75319 330 aaKnown RBP19.66■□□□□ 0.74
CLN3-255ENST00000637100 ZFYP08048 801 aaPredicted RBP19.66■□□□□ 0.74
CLN3-255ENST00000637100 OAZ1P54368 228 aa19.66■□□□□ 0.74
CLN3-255ENST00000637100 SNRNP48Q6IEG0 339 aaKnown RBP19.66■□□□□ 0.74
CLN3-255ENST00000637100 FAM161BQ96MY7 647 aa19.66■□□□□ 0.74
CLN3-255ENST00000637100 UPF3AQ9H1J1 476 aaKnown RBP19.66■□□□□ 0.74
CLN3-255ENST00000637100 MTMR4Q9NYA4 1195 aa19.66■□□□□ 0.74
CLN3-255ENST00000637100 RCAN3Q9UKA8 241 aa19.66■□□□□ 0.74
CLN3-255ENST00000637100 VCANP13611 3396 aa19.66■□□□□ 0.74
CLN3-255ENST00000637100 ELP1O95163 1332 aa19.66■□□□□ 0.74
CLN3-255ENST00000637100 SYNRGQ9UMZ2 1314 aa19.66■□□□□ 0.74
CLN3-255ENST00000637100 RNF113AO15541 343 aaKnown RBP19.65■□□□□ 0.74
CLN3-255ENST00000637100 GNAT2P19087 354 aa19.65■□□□□ 0.74
CLN3-255ENST00000637100 C20orf194Q5TEA3 1177 aa19.65■□□□□ 0.74
CLN3-255ENST00000637100 DIEXFQ68CQ4 756 aaKnown RBP19.65■□□□□ 0.74
CLN3-255ENST00000637100 SAMD1Q6SPF0 538 aaPredicted RBP19.65■□□□□ 0.74
CLN3-255ENST00000637100 GMCL1P1Q8NEA9 526 aa19.65■□□□□ 0.74
CLN3-255ENST00000637100 KATNBL1Q9H079 304 aa19.65■□□□□ 0.74
CLN3-255ENST00000637100 MKNK2Q9HBH9 465 aa19.65■□□□□ 0.74
CLN3-255ENST00000637100 TBX21Q9UL17 535 aa19.65■□□□□ 0.74
CLN3-255ENST00000637100 PLIN4Q96Q06 1357 aa19.65■□□□□ 0.74
CLN3-255ENST00000637100 SPTBN5Q9NRC6 3674 aaKnown RBP19.65■□□□□ 0.74
CLN3-255ENST00000637100 MYCNP04198 464 aaPredicted RBP19.64■□□□□ 0.73
CLN3-255ENST00000637100 FDX1P10109 184 aa19.64■□□□□ 0.73
CLN3-255ENST00000637100 CHST13Q8NET6 341 aa19.64■□□□□ 0.73
CLN3-255ENST00000637100 NUP133Q8WUM0 1156 aa19.64■□□□□ 0.73
CLN3-255ENST00000637100 LENG1Q96BZ8 264 aaPredicted RBP19.64■□□□□ 0.73
CLN3-255ENST00000637100 ABHD16BQ9H3Z7 469 aa19.64■□□□□ 0.73
CLN3-255ENST00000637100 CLIP2Q9UDT6 1046 aa19.64■□□□□ 0.73
CLN3-255ENST00000637100 FEM1BQ9UK73 627 aa19.64■□□□□ 0.73
CLN3-255ENST00000637100 PATL2C9JE40 543 aaKnown RBP19.63■□□□□ 0.73
CLN3-255ENST00000637100 GPAA1O43292 621 aa19.63■□□□□ 0.73
CLN3-255ENST00000637100 ADCY6O43306 1168 aa19.63■□□□□ 0.73
CLN3-255ENST00000637100 ZBED4O75132 1171 aa19.63■□□□□ 0.73
CLN3-255ENST00000637100 RAG1P15918 1043 aa19.63■□□□□ 0.73
CLN3-255ENST00000637100 GJA9P57773 515 aa19.63■□□□□ 0.73
CLN3-255ENST00000637100 ACVR2BQ13705 512 aa19.63■□□□□ 0.73
CLN3-255ENST00000637100 KCNA10Q16322 511 aa19.63■□□□□ 0.73
CLN3-255ENST00000637100 NEDD1Q8NHV4 660 aa19.63■□□□□ 0.73
CLN3-255ENST00000637100 DDX11Q96FC9 970 aa19.63■□□□□ 0.73
CLN3-255ENST00000637100 CEP95Q96GE4 821 aa19.63■□□□□ 0.73
CLN3-255ENST00000637100 ZNF287Q9HBT7 754 aa19.63■□□□□ 0.73
CLN3-255ENST00000637100 STARD7Q9NQZ5 370 aa19.63■□□□□ 0.73
CLN3-255ENST00000637100 TMEM39AQ9NV64 488 aa19.63■□□□□ 0.73
CLN3-255ENST00000637100 FBXO40Q9UH90 709 aa19.63■□□□□ 0.73
CLN3-255ENST00000637100 DCDC2CA8MYV0 355 aa19.62■□□□□ 0.73
CLN3-255ENST00000637100 MINDY4BA8MYZ0 360 aa19.62■□□□□ 0.73
CLN3-255ENST00000637100 CTAGE5O15320 804 aa19.62■□□□□ 0.73
CLN3-255ENST00000637100 TIMP1P01033 207 aa19.62■□□□□ 0.73
CLN3-255ENST00000637100 FPGSQ05932 587 aa19.62■□□□□ 0.73
CLN3-255ENST00000637100 RASIP1Q5U651 963 aa19.62■□□□□ 0.73
CLN3-255ENST00000637100 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.62■□□□□ 0.73
CLN3-255ENST00000637100 EYSQ5T1H1 3165 aa19.61■□□□□ 0.73
CLN3-255ENST00000637100 MYADML2A6NDP7 307 aa19.61■□□□□ 0.73
CLN3-255ENST00000637100 PLA2G6O60733 806 aa19.61■□□□□ 0.73
CLN3-255ENST00000637100 PQBP1O60828 265 aaKnown RBP19.61■□□□□ 0.73
CLN3-255ENST00000637100 TTLL1O95922 423 aa19.61■□□□□ 0.73
CLN3-255ENST00000637100 MFSD5Q6N075 450 aa19.61■□□□□ 0.73
CLN3-255ENST00000637100 IFNL3Q8IZI9 196 aa19.61■□□□□ 0.73
CLN3-255ENST00000637100 ZNF444Q8N0Y2 327 aaPredicted RBP19.61■□□□□ 0.73
CLN3-255ENST00000637100 FAM133AQ8N9E0 248 aa19.61■□□□□ 0.73
CLN3-255ENST00000637100 PCSK9Q8NBP7 692 aaKnown RBP19.61■□□□□ 0.73
CLN3-255ENST00000637100 MAFAQ8NHW3 353 aaPredicted RBP19.61■□□□□ 0.73
CLN3-255ENST00000637100 RNPC3Q96LT9 517 aaKnown RBP19.61■□□□□ 0.73
CLN3-255ENST00000637100 BCL11AQ9H165 835 aa19.61■□□□□ 0.73
CLN3-255ENST00000637100 MROH7Q68CQ1 1323 aa19.6■□□□□ 0.73
CLN3-255ENST00000637100 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.6■□□□□ 0.73
CLN3-255ENST00000637100 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.6■□□□□ 0.73
CLN3-255ENST00000637100 M0R2C6 588 aa19.6■□□□□ 0.73
CLN3-255ENST00000637100 C16orf59Q7L2K0 433 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms