RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 PTPRFP10586 1907 aa12.13□□□□□ -0.47
CLN3-248ENST00000636355 SSC5DA1L4H1 1573 aa12.13□□□□□ -0.47
CLN3-248ENST00000636355 POLR2AP24928 1970 aaKnown RBP12.12□□□□□ -0.47
CLN3-248ENST00000636355 TRIM75PA6NK02 468 aa12.12□□□□□ -0.47
CLN3-248ENST00000636355 PHF20L1A8MW92 1017 aa12.12□□□□□ -0.47
CLN3-248ENST00000636355 F5H6K3 240 aa12.12□□□□□ -0.47
CLN3-248ENST00000636355 M0R2N6 131 aa12.12□□□□□ -0.47
CLN3-248ENST00000636355 GADD45BO75293 160 aaPredicted RBP12.12□□□□□ -0.47
CLN3-248ENST00000636355 NDUFB10O96000 172 aa12.12□□□□□ -0.47
CLN3-248ENST00000636355 GOLGA8HP0CJ92 632 aa12.12□□□□□ -0.47
CLN3-248ENST00000636355 BMP3P12645 472 aa12.12□□□□□ -0.47
CLN3-248ENST00000636355 ME1P48163 572 aa12.12□□□□□ -0.47
CLN3-248ENST00000636355 NAPAP54920 295 aa12.12□□□□□ -0.47
CLN3-248ENST00000636355 ATP2B2Q01814 1243 aa12.12□□□□□ -0.47
CLN3-248ENST00000636355 KLRC3Q07444 240 aa12.12□□□□□ -0.47
CLN3-248ENST00000636355 PTPAQ15257 358 aa12.12□□□□□ -0.47
CLN3-248ENST00000636355 SF3A1Q15459 793 aaKnown RBP12.12□□□□□ -0.47
CLN3-248ENST00000636355 C9orf131Q5VYM1 1079 aa12.12□□□□□ -0.47
CLN3-248ENST00000636355 DPY19L2Q6NUT2 758 aa12.12□□□□□ -0.47
CLN3-248ENST00000636355 TRPM4Q8TD43 1214 aa12.12□□□□□ -0.47
CLN3-248ENST00000636355 ZC3H15Q8WU90 426 aaKnown RBP12.12□□□□□ -0.47
CLN3-248ENST00000636355 MRPS27Q92552 414 aaKnown RBP12.12□□□□□ -0.47
CLN3-248ENST00000636355 VCPKMTQ9H867 229 aa12.12□□□□□ -0.47
CLN3-248ENST00000636355 TMEM63CQ9P1W3 806 aa12.12□□□□□ -0.47
CLN3-248ENST00000636355 ZNF112Q9UJU3 913 aa12.12□□□□□ -0.47
CLN3-248ENST00000636355 PNMA2Q9UL42 364 aa12.12□□□□□ -0.47
CLN3-248ENST00000636355 LOC285556D6RIA3 1793 aa12.12□□□□□ -0.47
CLN3-248ENST00000636355 FRMPD2Q68DX3 1309 aaPredicted RBP12.11□□□□□ -0.47
CLN3-248ENST00000636355 FAM237AA0A1B0GTK4 181 aa12.11□□□□□ -0.47
CLN3-248ENST00000636355 LAD1O00515 517 aa12.11□□□□□ -0.47
CLN3-248ENST00000636355 CTAGE5O15320 804 aa12.11□□□□□ -0.47
CLN3-248ENST00000636355 CUTAO60888 179 aa12.11□□□□□ -0.47
CLN3-248ENST00000636355 STAT2P52630 851 aa12.11□□□□□ -0.47
CLN3-248ENST00000636355 FAM160A1Q05DH4 1040 aa12.11□□□□□ -0.47
CLN3-248ENST00000636355 NR5A1Q13285 461 aa12.11□□□□□ -0.47
CLN3-248ENST00000636355 RRP1BQ14684 758 aaKnown RBP12.11□□□□□ -0.47
CLN3-248ENST00000636355 SUPT20HL1Q3ZLR7 823 aa12.11□□□□□ -0.47
CLN3-248ENST00000636355 NOL9Q5SY16 702 aaKnown RBP12.11□□□□□ -0.47
CLN3-248ENST00000636355 ANGEL2Q5VTE6 544 aaKnown RBP12.11□□□□□ -0.47
CLN3-248ENST00000636355 USP50Q70EL3 339 aaPredicted RBP12.11□□□□□ -0.47
CLN3-248ENST00000636355 RASGRP2Q7LDG7 609 aa12.11□□□□□ -0.47
CLN3-248ENST00000636355 FAM160B2Q86V87 743 aa12.11□□□□□ -0.47
CLN3-248ENST00000636355 ADGRF4Q8IZF3 695 aa12.11□□□□□ -0.47
CLN3-248ENST00000636355 REXO1Q8N1G1 1221 aaKnown RBP12.11□□□□□ -0.47
CLN3-248ENST00000636355 ZNF579Q8NAF0 562 aaKnown RBP12.11□□□□□ -0.47
CLN3-248ENST00000636355 FERMT2Q96AC1 680 aa12.11□□□□□ -0.47
CLN3-248ENST00000636355 PGBD1Q96JS3 809 aa12.11□□□□□ -0.47
CLN3-248ENST00000636355 PIGSQ96S52 555 aa12.11□□□□□ -0.47
CLN3-248ENST00000636355 KIAA1683Q9H0B3 1180 aa12.11□□□□□ -0.47
CLN3-248ENST00000636355 JMJD4Q9H9V9 463 aa12.11□□□□□ -0.47
CLN3-248ENST00000636355 CLIC4Q9Y696 253 aa12.11□□□□□ -0.47
CLN3-248ENST00000636355 CCDC194A0A1B0GVG4 234 aa12.1□□□□□ -0.47
CLN3-248ENST00000636355 hCG_1642624A0A1W2PR95 340 aa12.1□□□□□ -0.47
CLN3-248ENST00000636355 FSD2A1L4K1 749 aa12.1□□□□□ -0.47
CLN3-248ENST00000636355 IQCA1LA6NCM1 817 aa12.1□□□□□ -0.47
CLN3-248ENST00000636355 WDR46O15213 610 aaKnown RBP12.1□□□□□ -0.47
CLN3-248ENST00000636355 HSPA6P17066 643 aa12.1□□□□□ -0.47
CLN3-248ENST00000636355 CMA1P23946 247 aa12.1□□□□□ -0.47
CLN3-248ENST00000636355 ADCY7P51828 1080 aa12.1□□□□□ -0.47
CLN3-248ENST00000636355 USP14P54578 494 aa12.1□□□□□ -0.47
CLN3-248ENST00000636355 L1TD1Q5T7N2 865 aaKnown RBP12.1□□□□□ -0.47
CLN3-248ENST00000636355 SYDE2Q5VT97 1194 aa12.1□□□□□ -0.47
CLN3-248ENST00000636355 ARL6IP4Q66PJ3 421 aaKnown RBP12.1□□□□□ -0.47
CLN3-248ENST00000636355 SCYL3Q8IZE3 742 aa12.1□□□□□ -0.47
CLN3-248ENST00000636355 KRI1Q8N9T8 703 aaKnown RBP12.1□□□□□ -0.47
CLN3-248ENST00000636355 OXER1Q8TDS5 423 aa12.1□□□□□ -0.47
CLN3-248ENST00000636355 CHURC1Q8WUH1 139 aa12.1□□□□□ -0.47
CLN3-248ENST00000636355 GPKOWQ92917 476 aaPredicted RBP eCLIP12.1□□□□□ -0.47
CLN3-248ENST00000636355 WDR18Q9BV38 432 aa12.1□□□□□ -0.47
CLN3-248ENST00000636355 FTOQ9C0B1 505 aaKnown RBP eCLIP12.1□□□□□ -0.47
CLN3-248ENST00000636355 NUP62CLQ9H1M0 184 aa12.1□□□□□ -0.47
CLN3-248ENST00000636355 AS3MTQ9HBK9 375 aa12.1□□□□□ -0.47
CLN3-248ENST00000636355 MTMR7Q9Y216 660 aa12.1□□□□□ -0.47
CLN3-248ENST00000636355 A0A1W2PRG0 241 aa12.09□□□□□ -0.47
CLN3-248ENST00000636355 CAPN15O75808 1086 aa12.09□□□□□ -0.47
CLN3-248ENST00000636355 EPS15P42566 896 aa12.09□□□□□ -0.47
CLN3-248ENST00000636355 TOB1P50616 345 aaPredicted RBP12.09□□□□□ -0.47
CLN3-248ENST00000636355 JAG1P78504 1218 aa12.09□□□□□ -0.47
CLN3-248ENST00000636355 CDC37Q16543 378 aaPredicted RBP12.09□□□□□ -0.47
CLN3-248ENST00000636355 TTC38Q5R3I4 469 aa12.09□□□□□ -0.47
CLN3-248ENST00000636355 TYW1BQ6NUM6 668 aa12.09□□□□□ -0.47
CLN3-248ENST00000636355 LRSAM1Q6UWE0 723 aa12.09□□□□□ -0.47
CLN3-248ENST00000636355 RBM43Q6ZSC3 357 aaKnown RBP12.09□□□□□ -0.47
CLN3-248ENST00000636355 HOMER1Q86YM7 354 aa12.09□□□□□ -0.47
CLN3-248ENST00000636355 CDAN1Q8IWY9 1227 aa12.09□□□□□ -0.47
CLN3-248ENST00000636355 CUL5Q93034 780 aa12.09□□□□□ -0.47
CLN3-248ENST00000636355 NAP1L4Q99733 375 aaKnown RBP12.09□□□□□ -0.47
CLN3-248ENST00000636355 GZF1Q9H116 711 aaPredicted RBP12.09□□□□□ -0.47
CLN3-248ENST00000636355 CLSTN2Q9H4D0 955 aa12.09□□□□□ -0.47
CLN3-248ENST00000636355 GPCPD1Q9NPB8 672 aa12.09□□□□□ -0.47
CLN3-248ENST00000636355 RIC8AQ9NPQ8 531 aa12.09□□□□□ -0.47
CLN3-248ENST00000636355 FEM1BQ9UK73 627 aa12.09□□□□□ -0.47
CLN3-248ENST00000636355 PCDHA7Q9UN72 937 aa12.09□□□□□ -0.47
CLN3-248ENST00000636355 MYH7BA7E2Y1 1941 aa12.09□□□□□ -0.47
CLN3-248ENST00000636355 A0A0G2JMZ2 1700 aa12.08□□□□□ -0.47
CLN3-248ENST00000636355 GOLGA6L3A6NEY3 463 aa12.08□□□□□ -0.48
CLN3-248ENST00000636355 KINO60870 393 aaKnown RBP12.08□□□□□ -0.48
CLN3-248ENST00000636355 DDNO94850 711 aaPredicted RBP12.08□□□□□ -0.48
CLN3-248ENST00000636355 FDX1P10109 184 aa12.08□□□□□ -0.48
CLN3-248ENST00000636355 PTPREP23469 700 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms