RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 PRAMEF19Q5SWL8 479 aa21.93■■□□□ 1.1
CLN3-241ENST00000635861 SNRNP48Q6IEG0 339 aaKnown RBP21.93■■□□□ 1.1
CLN3-241ENST00000635861 STK11IPQ8N1F8 1099 aa21.93■■□□□ 1.1
CLN3-241ENST00000635861 NEDD1Q8NHV4 660 aa21.93■■□□□ 1.1
CLN3-241ENST00000635861 CEP95Q96GE4 821 aa21.93■■□□□ 1.1
CLN3-241ENST00000635861 NAPBQ9H115 298 aa21.93■■□□□ 1.1
CLN3-241ENST00000635861 ZBTB47Q9UFB7 747 aaPredicted RBP21.93■■□□□ 1.1
CLN3-241ENST00000635861 CTDP1Q9Y5B0 961 aaPredicted RBP21.93■■□□□ 1.1
CLN3-241ENST00000635861 PGK2P07205 417 aa21.92■■□□□ 1.1
CLN3-241ENST00000635861 TSPY3P0CV98 308 aa21.92■■□□□ 1.1
CLN3-241ENST00000635861 TSPY8P0CW00 308 aa21.92■■□□□ 1.1
CLN3-241ENST00000635861 AKR1A1P14550 325 aa21.92■■□□□ 1.1
CLN3-241ENST00000635861 MDM2Q00987 491 aaPredicted RBP21.92■■□□□ 1.1
CLN3-241ENST00000635861 FAM47AQ5JRC9 791 aa21.92■■□□□ 1.1
CLN3-241ENST00000635861 ZNF467Q7Z7K2 595 aaPredicted RBP21.92■■□□□ 1.1
CLN3-241ENST00000635861 RNF180Q86T96 592 aa21.92■■□□□ 1.1
CLN3-241ENST00000635861 TICAM2Q86XR7 235 aa21.92■■□□□ 1.1
CLN3-241ENST00000635861 NUP88Q99567 741 aaPredicted RBP21.92■■□□□ 1.1
CLN3-241ENST00000635861 FBXO40Q9UH90 709 aa21.92■■□□□ 1.1
CLN3-241ENST00000635861 CNPY2Q9Y2B0 182 aa21.92■■□□□ 1.1
CLN3-241ENST00000635861 SYNGAP1Q96PV0 1343 aa21.92■■□□□ 1.1
CLN3-241ENST00000635861 RRP1P56182 461 aaKnown RBP21.91■■□□□ 1.1
CLN3-241ENST00000635861 PPARAQ07869 468 aa21.91■■□□□ 1.1
CLN3-241ENST00000635861 ANO1Q5XXA6 986 aa21.91■■□□□ 1.1
CLN3-241ENST00000635861 SLC38A10Q9HBR0 1119 aa21.91■■□□□ 1.1
CLN3-241ENST00000635861 XPNPEP3Q9NQH7 507 aa21.91■■□□□ 1.1
CLN3-241ENST00000635861 PHF24Q9UPV7 400 aa21.91■■□□□ 1.1
CLN3-241ENST00000635861 SALL3Q9BXA9 1300 aa21.91■■□□□ 1.1
CLN3-241ENST00000635861 DNAJC25-GNG10A0A024R161 153 aa21.9■■□□□ 1.1
CLN3-241ENST00000635861 PRDM1O75626 825 aa21.9■■□□□ 1.1
CLN3-241ENST00000635861 MAMDC4Q6UXC1 1216 aa21.9■■□□□ 1.1
CLN3-241ENST00000635861 DDX11Q96FC9 970 aa21.9■■□□□ 1.1
CLN3-241ENST00000635861 SEC62Q99442 399 aaKnown RBP21.9■■□□□ 1.1
CLN3-241ENST00000635861 ATP11BQ9Y2G3 1177 aa21.9■■□□□ 1.1
CLN3-241ENST00000635861 ZNF865P0CJ78 1059 aaPredicted RBP21.89■■□□□ 1.1
CLN3-241ENST00000635861 ADCYAP1R1P41586 468 aa21.89■■□□□ 1.1
CLN3-241ENST00000635861 CHST13Q8NET6 341 aa21.89■■□□□ 1.1
CLN3-241ENST00000635861 BMP3P12645 472 aa21.89■■□□□ 1.09
CLN3-241ENST00000635861 DEFB123Q8N688 67 aa21.89■■□□□ 1.09
CLN3-241ENST00000635861 OTUD7AQ8TE49 926 aaPredicted RBP21.89■■□□□ 1.09
CLN3-241ENST00000635861 TSEN34Q9BSV6 310 aaKnown RBP21.89■■□□□ 1.09
CLN3-241ENST00000635861 RIPK3Q9Y572 518 aa21.89■■□□□ 1.09
CLN3-241ENST00000635861 MYCNP04198 464 aaPredicted RBP21.88■■□□□ 1.09
CLN3-241ENST00000635861 TFAP4Q01664 338 aa21.88■■□□□ 1.09
CLN3-241ENST00000635861 SLFN13Q68D06 897 aa21.88■■□□□ 1.09
CLN3-241ENST00000635861 FAM160B2Q86V87 743 aa21.88■■□□□ 1.09
CLN3-241ENST00000635861 KIFC2Q96AC6 838 aa21.88■■□□□ 1.09
CLN3-241ENST00000635861 EVI5LQ96CN4 794 aa21.88■■□□□ 1.09
CLN3-241ENST00000635861 GMCL1Q96IK5 515 aa21.88■■□□□ 1.09
CLN3-241ENST00000635861 PLA2G6O60733 806 aa21.87■■□□□ 1.09
CLN3-241ENST00000635861 STAT2P52630 851 aa21.87■■□□□ 1.09
CLN3-241ENST00000635861 AAMPQ13685 434 aa21.87■■□□□ 1.09
CLN3-241ENST00000635861 TRIM60Q495X7 471 aa21.87■■□□□ 1.09
CLN3-241ENST00000635861 CPXCR1Q8N123 301 aa21.87■■□□□ 1.09
CLN3-241ENST00000635861 LRRC47Q8N1G4 583 aaKnown RBP21.87■■□□□ 1.09
CLN3-241ENST00000635861 CHURC1Q8WUH1 139 aa21.87■■□□□ 1.09
CLN3-241ENST00000635861 FAM184BQ9ULE4 1060 aa21.87■■□□□ 1.09
CLN3-241ENST00000635861 HDAC1Q13547 482 aaPredicted RBP21.86■■□□□ 1.09
CLN3-241ENST00000635861 FAM109BQ6ICB4 259 aaPredicted RBP21.86■■□□□ 1.09
CLN3-241ENST00000635861 ANKRD35Q8N283 1001 aa21.86■■□□□ 1.09
CLN3-241ENST00000635861 PDLIM7Q9NR12 457 aa21.86■■□□□ 1.09
CLN3-241ENST00000635861 ANAPC4Q9UJX5 808 aa21.86■■□□□ 1.09
CLN3-241ENST00000635861 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.86■■□□□ 1.09
CLN3-241ENST00000635861 MOXD2PA6NHM9 499 aa21.85■■□□□ 1.09
CLN3-241ENST00000635861 ADAMTS4O75173 837 aa21.85■■□□□ 1.09
CLN3-241ENST00000635861 TAL1P17542 331 aaPredicted RBP21.85■■□□□ 1.09
CLN3-241ENST00000635861 ANKRD45Q5TZF3 282 aa21.85■■□□□ 1.09
CLN3-241ENST00000635861 FERMT2Q96AC1 680 aa21.85■■□□□ 1.09
CLN3-241ENST00000635861 YTHDC1Q96MU7 727 aaKnown RBP21.85■■□□□ 1.09
CLN3-241ENST00000635861 ABHD16BQ9H3Z7 469 aa21.85■■□□□ 1.09
CLN3-241ENST00000635861 RAVER2Q9HCJ3 691 aaKnown RBP21.85■■□□□ 1.09
CLN3-241ENST00000635861 HELLSQ9NRZ9 838 aa21.85■■□□□ 1.09
CLN3-241ENST00000635861 TACC3Q9Y6A5 838 aa21.85■■□□□ 1.09
CLN3-241ENST00000635861 TSPY2A6NKD2 308 aa21.84■■□□□ 1.09
CLN3-241ENST00000635861 DUSP11O75319 330 aaKnown RBP21.84■■□□□ 1.09
CLN3-241ENST00000635861 SNAI1O95863 264 aaPredicted RBP21.84■■□□□ 1.09
CLN3-241ENST00000635861 PGK1P00558 417 aa21.84■■□□□ 1.09
CLN3-241ENST00000635861 ALX1Q15699 326 aa21.84■■□□□ 1.09
CLN3-241ENST00000635861 TKFCQ3LXA3 575 aa21.84■■□□□ 1.09
CLN3-241ENST00000635861 STAG1Q8WVM7 1258 aa21.84■■□□□ 1.09
CLN3-241ENST00000635861 STXBP5LQ9Y2K9 1186 aa21.84■■□□□ 1.09
CLN3-241ENST00000635861 A0A0C4DFX4 3053 aa21.84■■□□□ 1.09
CLN3-241ENST00000635861 A0A1W2PQ45 241 aaPredicted RBP21.83■■□□□ 1.09
CLN3-241ENST00000635861 A0A1W2PQY0 241 aa21.83■■□□□ 1.09
CLN3-241ENST00000635861 TMEM232C9JQI7 657 aa21.83■■□□□ 1.09
CLN3-241ENST00000635861 SLC1A4P43007 532 aa21.83■■□□□ 1.09
CLN3-241ENST00000635861 NUP133Q8WUM0 1156 aa21.83■■□□□ 1.09
CLN3-241ENST00000635861 ACAD9Q9H845 621 aa21.83■■□□□ 1.09
CLN3-241ENST00000635861 PRDM5Q9NQX1 630 aaPredicted RBP21.83■■□□□ 1.09
CLN3-241ENST00000635861 MTMR10Q9NXD2 777 aa21.83■■□□□ 1.09
CLN3-241ENST00000635861 SYNRGQ9UMZ2 1314 aa21.83■■□□□ 1.08
CLN3-241ENST00000635861 FOXP2O15409 715 aa21.82■■□□□ 1.08
CLN3-241ENST00000635861 ORC4O43929 436 aa21.82■■□□□ 1.08
CLN3-241ENST00000635861 CST5P28325 142 aaPredicted RBP21.82■■□□□ 1.08
CLN3-241ENST00000635861 PDE1AP54750 535 aa21.82■■□□□ 1.08
CLN3-241ENST00000635861 TLE2Q04725 743 aa21.82■■□□□ 1.08
CLN3-241ENST00000635861 ACVR2BQ13705 512 aa21.82■■□□□ 1.08
CLN3-241ENST00000635861 KLHDC9Q8NEP7 349 aa21.82■■□□□ 1.08
CLN3-241ENST00000635861 TOX2Q96NM4 488 aa21.82■■□□□ 1.08
CLN3-241ENST00000635861 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.82■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms