RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 ATP6V1DQ9Y5K8 247 aa11.04□□□□□ -0.64
PDLIM5-223ENST00000627587 IGKV6D-41A0A0C4DH26 115 aa11.03□□□□□ -0.64
PDLIM5-223ENST00000627587 CXCL11O14625 94 aa11.03□□□□□ -0.64
PDLIM5-223ENST00000627587 FOSBP53539 338 aa11.03□□□□□ -0.64
PDLIM5-223ENST00000627587 CAP1Q01518 475 aa11.03□□□□□ -0.64
PDLIM5-223ENST00000627587 CCDC178Q5BJE1 867 aa11.03□□□□□ -0.64
PDLIM5-223ENST00000627587 METTL16Q86W50 562 aaKnown RBP11.03□□□□□ -0.64
PDLIM5-223ENST00000627587 DGKHQ86XP1 1220 aa11.03□□□□□ -0.64
PDLIM5-223ENST00000627587 NUP133Q8WUM0 1156 aa11.03□□□□□ -0.64
PDLIM5-223ENST00000627587 SHISA4Q96DD7 197 aa11.03□□□□□ -0.64
PDLIM5-223ENST00000627587 GDPD2Q9HCC8 539 aa11.03□□□□□ -0.64
PDLIM5-223ENST00000627587 SERPINB13Q9UIV8 391 aa11.03□□□□□ -0.64
PDLIM5-223ENST00000627587 KCNH4Q9UQ05 1017 aa11.03□□□□□ -0.64
PDLIM5-223ENST00000627587 CNPY2Q9Y2B0 182 aa11.03□□□□□ -0.64
PDLIM5-223ENST00000627587 STK36Q9NRP7 1315 aa11.03□□□□□ -0.64
PDLIM5-223ENST00000627587 CCDC196A0A1B0GTZ2 297 aa11.02□□□□□ -0.64
PDLIM5-223ENST00000627587 FAM196BA6NMK8 535 aa11.02□□□□□ -0.64
PDLIM5-223ENST00000627587 H3BQV1 296 aa11.02□□□□□ -0.64
PDLIM5-223ENST00000627587 TRAK2O60296 914 aa11.02□□□□□ -0.64
PDLIM5-223ENST00000627587 DDAH1O94760 285 aa11.02□□□□□ -0.64
PDLIM5-223ENST00000627587 PLEKHA8P1O95397 391 aa11.02□□□□□ -0.64
PDLIM5-223ENST00000627587 FMNL1O95466 1100 aaPredicted RBP11.02□□□□□ -0.64
PDLIM5-223ENST00000627587 HLA-DOAP06340 250 aa11.02□□□□□ -0.64
PDLIM5-223ENST00000627587 TSPY3P0CV98 308 aa11.02□□□□□ -0.64
PDLIM5-223ENST00000627587 TSPY8P0CW00 308 aa11.02□□□□□ -0.64
PDLIM5-223ENST00000627587 AKR1B1P15121 316 aa11.02□□□□□ -0.64
PDLIM5-223ENST00000627587 GUCY1B3Q02153 619 aa11.02□□□□□ -0.64
PDLIM5-223ENST00000627587 DNM1Q05193 864 aaKnown RBP11.02□□□□□ -0.64
PDLIM5-223ENST00000627587 SHROOM1Q2M3G4 852 aaPredicted RBP11.02□□□□□ -0.64
PDLIM5-223ENST00000627587 NOL9Q5SY16 702 aaKnown RBP11.02□□□□□ -0.64
PDLIM5-223ENST00000627587 RASGRP2Q7LDG7 609 aa11.02□□□□□ -0.64
PDLIM5-223ENST00000627587 CATIPQ7Z7H3 387 aa11.02□□□□□ -0.64
PDLIM5-223ENST00000627587 CRACR2BQ8N4Y2 399 aaPredicted RBP11.02□□□□□ -0.64
PDLIM5-223ENST00000627587 FBXO18Q8NFZ0 1043 aa11.02□□□□□ -0.64
PDLIM5-223ENST00000627587 CEP95Q96GE4 821 aa11.02□□□□□ -0.64
PDLIM5-223ENST00000627587 PPP2R5BQ15173 497 aa11.02□□□□□ -0.65
PDLIM5-223ENST00000627587 SLC35G1Q2M3R5 365 aa11.02□□□□□ -0.65
PDLIM5-223ENST00000627587 CLEC10AQ8IUN9 316 aa11.02□□□□□ -0.65
PDLIM5-223ENST00000627587 TMEM87AQ8NBN3 555 aa11.02□□□□□ -0.65
PDLIM5-223ENST00000627587 TRIM47Q96LD4 638 aa11.02□□□□□ -0.65
PDLIM5-223ENST00000627587 TMEM47Q9BQJ4 181 aa11.02□□□□□ -0.65
PDLIM5-223ENST00000627587 DHX36Q9H2U1 1008 aaKnown RBP11.02□□□□□ -0.65
PDLIM5-223ENST00000627587 SRRDQ9UH36 339 aa11.02□□□□□ -0.65
PDLIM5-223ENST00000627587 PDHXO00330 501 aa11.01□□□□□ -0.65
PDLIM5-223ENST00000627587 ENTPD3O75355 529 aa11.01□□□□□ -0.65
PDLIM5-223ENST00000627587 PRPF40AO75400 957 aaKnown RBP11.01□□□□□ -0.65
PDLIM5-223ENST00000627587 CALM1P0DP23 149 aa11.01□□□□□ -0.65
PDLIM5-223ENST00000627587 CALM2P0DP24 149 aa11.01□□□□□ -0.65
PDLIM5-223ENST00000627587 CALM3P0DP25 149 aa11.01□□□□□ -0.65
PDLIM5-223ENST00000627587 PSMC4P43686 418 aa11.01□□□□□ -0.65
PDLIM5-223ENST00000627587 PKN1Q16512 942 aa11.01□□□□□ -0.65
PDLIM5-223ENST00000627587 TMTC3Q6ZXV5 915 aa11.01□□□□□ -0.65
PDLIM5-223ENST00000627587 MIGA2Q7L4E1 593 aa11.01□□□□□ -0.65
PDLIM5-223ENST00000627587 FASTKD5Q7L8L6 764 aaKnown RBP11.01□□□□□ -0.65
PDLIM5-223ENST00000627587 CCDC82Q8N4S0 544 aa11.01□□□□□ -0.65
PDLIM5-223ENST00000627587 PNMA1Q8ND90 353 aa11.01□□□□□ -0.65
PDLIM5-223ENST00000627587 GPT2Q8TD30 523 aa11.01□□□□□ -0.65
PDLIM5-223ENST00000627587 PARK7Q99497 189 aaKnown RBP11.01□□□□□ -0.65
PDLIM5-223ENST00000627587 SWAP70Q9UH65 585 aa11.01□□□□□ -0.65
PDLIM5-223ENST00000627587 CNTNAP5Q8WYK1 1306 aa11.01□□□□□ -0.65
PDLIM5-223ENST00000627587 ATAD5Q96QE3 1844 aa11□□□□□ -0.65
PDLIM5-223ENST00000627587 KIF28PB7ZC32 967 aa11□□□□□ -0.65
PDLIM5-223ENST00000627587 INPP5BP32019 993 aa11□□□□□ -0.65
PDLIM5-223ENST00000627587 UBXN2AP68543 259 aa11□□□□□ -0.65
PDLIM5-223ENST00000627587 TATDN1Q6P1N9 297 aa11□□□□□ -0.65
PDLIM5-223ENST00000627587 STAG2Q8N3U4 1231 aa11□□□□□ -0.65
PDLIM5-223ENST00000627587 SRBD1Q8N5C6 995 aaKnown RBP11□□□□□ -0.65
PDLIM5-223ENST00000627587 RAET1EQ8TD07 263 aa11□□□□□ -0.65
PDLIM5-223ENST00000627587 SH3TC2Q8TF17 1288 aa11□□□□□ -0.65
PDLIM5-223ENST00000627587 C8orf76Q96K31 380 aa11□□□□□ -0.65
PDLIM5-223ENST00000627587 ALG1Q9BT22 464 aa11□□□□□ -0.65
PDLIM5-223ENST00000627587 SLC26A6Q9BXS9 759 aa11□□□□□ -0.65
PDLIM5-223ENST00000627587 MTMR4Q9NYA4 1195 aa11□□□□□ -0.65
PDLIM5-223ENST00000627587 PI4KBQ9UBF8 816 aa11□□□□□ -0.65
PDLIM5-223ENST00000627587 GADD45BO75293 160 aaPredicted RBP11□□□□□ -0.65
PDLIM5-223ENST00000627587 JAG1P78504 1218 aa11□□□□□ -0.65
PDLIM5-223ENST00000627587 SSRP1Q08945 709 aaKnown RBP11□□□□□ -0.65
PDLIM5-223ENST00000627587 RRP1BQ14684 758 aaKnown RBP11□□□□□ -0.65
PDLIM5-223ENST00000627587 RGS22Q8NE09 1264 aa11□□□□□ -0.65
PDLIM5-223ENST00000627587 MAP3K14Q99558 947 aa11□□□□□ -0.65
PDLIM5-223ENST00000627587 ARHGAP39Q9C0H5 1083 aa11□□□□□ -0.65
PDLIM5-223ENST00000627587 KAT14Q9H8E8 782 aa11□□□□□ -0.65
PDLIM5-223ENST00000627587 RBM28Q9NW13 759 aaKnown RBP11□□□□□ -0.65
PDLIM5-223ENST00000627587 CPA4Q9UI42 421 aa11□□□□□ -0.65
PDLIM5-223ENST00000627587 MAD2L2Q9UI95 211 aa11□□□□□ -0.65
PDLIM5-223ENST00000627587 STX8Q9UNK0 236 aa11□□□□□ -0.65
PDLIM5-223ENST00000627587 GJB1P08034 283 aa10.99□□□□□ -0.65
PDLIM5-223ENST00000627587 OSBPP22059 807 aa10.99□□□□□ -0.65
PDLIM5-223ENST00000627587 GRK4P32298 578 aa10.99□□□□□ -0.65
PDLIM5-223ENST00000627587 FXR1P51114 621 aaKnown RBP eCLIP10.99□□□□□ -0.65
PDLIM5-223ENST00000627587 FCGRTP55899 365 aa10.99□□□□□ -0.65
PDLIM5-223ENST00000627587 GRM4Q14833 912 aa10.99□□□□□ -0.65
PDLIM5-223ENST00000627587 KRT40Q6A162 431 aa10.99□□□□□ -0.65
PDLIM5-223ENST00000627587 ZSCAN29Q8IWY8 852 aaPredicted RBP10.99□□□□□ -0.65
PDLIM5-223ENST00000627587 TRIM22Q8IYM9 498 aa10.99□□□□□ -0.65
PDLIM5-223ENST00000627587 HTATIP2Q9BUP3 242 aa10.99□□□□□ -0.65
PDLIM5-223ENST00000627587 RNF26Q9BY78 433 aaPredicted RBP10.99□□□□□ -0.65
PDLIM5-223ENST00000627587 ZSCAN16Q9H4T2 348 aaPredicted RBP10.99□□□□□ -0.65
PDLIM5-223ENST00000627587 COLQQ9Y215 455 aaPredicted RBP10.99□□□□□ -0.65
PDLIM5-223ENST00000627587 SLC45A1Q9Y2W3 748 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms