RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 CDC25BP30305 580 aa18.62■□□□□ 0.57
LDB3-208ENST00000623007 PTGDRQ13258 359 aa18.62■□□□□ 0.57
LDB3-208ENST00000623007 TNIP1Q15025 636 aa18.62■□□□□ 0.57
LDB3-208ENST00000623007 IQCB1Q15051 598 aa18.62■□□□□ 0.57
LDB3-208ENST00000623007 NONOQ15233 471 aaKnown RBP eCLIP18.62■□□□□ 0.57
LDB3-208ENST00000623007 RBM26Q5T8P6 1007 aaKnown RBP18.62■□□□□ 0.57
LDB3-208ENST00000623007 NT5DC1Q5TFE4 455 aa18.62■□□□□ 0.57
LDB3-208ENST00000623007 FAM83AQ86UY5 434 aa18.62■□□□□ 0.57
LDB3-208ENST00000623007 LUZP1Q86V48 1076 aa18.62■□□□□ 0.57
LDB3-208ENST00000623007 GMCL1P1Q8NEA9 526 aa18.62■□□□□ 0.57
LDB3-208ENST00000623007 GPKOWQ92917 476 aaPredicted RBP eCLIP18.62■□□□□ 0.57
LDB3-208ENST00000623007 CSRNP2Q9H175 543 aa18.62■□□□□ 0.57
LDB3-208ENST00000623007 PCDHA6Q9UN73 950 aa18.62■□□□□ 0.57
LDB3-208ENST00000623007 PCDHA8Q9Y5H6 950 aa18.62■□□□□ 0.57
LDB3-208ENST00000623007 SMCO2A6NFE2 343 aa18.61■□□□□ 0.57
LDB3-208ENST00000623007 RPS12P25398 132 aaKnown RBP18.61■□□□□ 0.57
LDB3-208ENST00000623007 TCP10Q12799 353 aa18.61■□□□□ 0.57
LDB3-208ENST00000623007 ABCB5Q2M3G0 1257 aa18.61■□□□□ 0.57
LDB3-208ENST00000623007 AK8Q96MA6 479 aa18.61■□□□□ 0.57
LDB3-208ENST00000623007 TAOK3Q9H2K8 898 aa18.61■□□□□ 0.57
LDB3-208ENST00000623007 TDRD3Q9H7E2 651 aaKnown RBP18.61■□□□□ 0.57
LDB3-208ENST00000623007 SIPA1L1O43166 1804 aa18.61■□□□□ 0.57
LDB3-208ENST00000623007 LTBP3Q9NS15 1303 aa18.6■□□□□ 0.57
LDB3-208ENST00000623007 DDTLA6NHG4 134 aaPredicted RBP18.6■□□□□ 0.57
LDB3-208ENST00000623007 PSMD14O00487 310 aa18.6■□□□□ 0.57
LDB3-208ENST00000623007 POLR2DO15514 142 aaKnown RBP18.6■□□□□ 0.57
LDB3-208ENST00000623007 GOLGA8HP0CJ92 632 aa18.6■□□□□ 0.57
LDB3-208ENST00000623007 CLCN1P35523 988 aa18.6■□□□□ 0.57
LDB3-208ENST00000623007 POSTNQ15063 836 aa18.6■□□□□ 0.57
LDB3-208ENST00000623007 ZNF174Q15697 407 aa18.6■□□□□ 0.57
LDB3-208ENST00000623007 REXO1Q8N1G1 1221 aaKnown RBP18.6■□□□□ 0.57
LDB3-208ENST00000623007 IQUBQ8NA54 791 aa18.6■□□□□ 0.57
LDB3-208ENST00000623007 PRMT6Q96LA8 375 aaPredicted RBP18.6■□□□□ 0.57
LDB3-208ENST00000623007 ZKSCAN5Q9Y2L8 839 aa18.6■□□□□ 0.57
LDB3-208ENST00000623007 TBC1D12O60347 775 aa18.6■□□□□ 0.57
LDB3-208ENST00000623007 SLFN14P0C7P3 912 aa18.6■□□□□ 0.57
LDB3-208ENST00000623007 TNNI2P48788 182 aa18.6■□□□□ 0.57
LDB3-208ENST00000623007 MRPL12P52815 198 aaKnown RBP18.6■□□□□ 0.57
LDB3-208ENST00000623007 PLCB2Q00722 1185 aa18.6■□□□□ 0.57
LDB3-208ENST00000623007 ICA1Q05084 483 aa18.6■□□□□ 0.57
LDB3-208ENST00000623007 SPDYE2Q495Y8 402 aa18.6■□□□□ 0.57
LDB3-208ENST00000623007 LONRF3Q496Y0 759 aa18.6■□□□□ 0.57
LDB3-208ENST00000623007 LRRC47Q8N1G4 583 aaKnown RBP18.6■□□□□ 0.57
LDB3-208ENST00000623007 PIBF1Q8WXW3 757 aa18.6■□□□□ 0.57
LDB3-208ENST00000623007 MTMR8Q96EF0 704 aa18.6■□□□□ 0.57
LDB3-208ENST00000623007 GMCL1Q96IK5 515 aa18.6■□□□□ 0.57
LDB3-208ENST00000623007 CSRNP1Q96S65 589 aa18.6■□□□□ 0.57
LDB3-208ENST00000623007 MTMR7Q9Y216 660 aa18.6■□□□□ 0.57
LDB3-208ENST00000623007 MYL1P05976 194 aa18.59■□□□□ 0.57
LDB3-208ENST00000623007 ADCY7P51828 1080 aa18.59■□□□□ 0.57
LDB3-208ENST00000623007 CCDC96Q2M329 555 aa18.59■□□□□ 0.57
LDB3-208ENST00000623007 EARS2Q5JPH6 523 aaKnown RBP18.59■□□□□ 0.57
LDB3-208ENST00000623007 DTHD1Q6ZMT9 781 aa18.59■□□□□ 0.57
LDB3-208ENST00000623007 HOMER1Q86YM7 354 aa18.59■□□□□ 0.57
LDB3-208ENST00000623007 MLKLQ8NB16 471 aa18.59■□□□□ 0.57
LDB3-208ENST00000623007 SMARCE1Q969G3 411 aa18.59■□□□□ 0.57
LDB3-208ENST00000623007 MRFAP1L1Q96HT8 127 aa18.59■□□□□ 0.57
LDB3-208ENST00000623007 PIGSQ96S52 555 aa18.59■□□□□ 0.57
LDB3-208ENST00000623007 TRIM5Q9C035 493 aa18.59■□□□□ 0.57
LDB3-208ENST00000623007 PDGFDQ9GZP0 370 aaPredicted RBP18.59■□□□□ 0.57
LDB3-208ENST00000623007 DNAJC18Q9H819 358 aa18.59■□□□□ 0.57
LDB3-208ENST00000623007 MAGEF1Q9HAY2 307 aa18.59■□□□□ 0.57
LDB3-208ENST00000623007 ZNF277Q9NRM2 450 aaPredicted RBP18.59■□□□□ 0.57
LDB3-208ENST00000623007 FER1L6Q2WGJ9 1857 aa18.58■□□□□ 0.57
LDB3-208ENST00000623007 ZBTB5O15062 677 aa18.58■□□□□ 0.57
LDB3-208ENST00000623007 MCM7P33993 719 aa18.58■□□□□ 0.57
LDB3-208ENST00000623007 SLC1A4P43007 532 aa18.58■□□□□ 0.57
LDB3-208ENST00000623007 SLC35G1Q2M3R5 365 aa18.58■□□□□ 0.57
LDB3-208ENST00000623007 CIAPIN1Q6FI81 312 aa18.58■□□□□ 0.57
LDB3-208ENST00000623007 NEK8Q86SG6 692 aa18.58■□□□□ 0.57
LDB3-208ENST00000623007 GTPBP4Q9BZE4 634 aaKnown RBP18.58■□□□□ 0.57
LDB3-208ENST00000623007 SH2D4AQ9H788 454 aa18.58■□□□□ 0.57
LDB3-208ENST00000623007 ARHGEF10LQ9HCE6 1279 aa18.58■□□□□ 0.57
LDB3-208ENST00000623007 GINM1Q9NU53 330 aa18.58■□□□□ 0.57
LDB3-208ENST00000623007 EEF2P13639 858 aaKnown RBP18.57■□□□□ 0.56
LDB3-208ENST00000623007 MDM2Q00987 491 aaPredicted RBP18.57■□□□□ 0.56
LDB3-208ENST00000623007 TNFAIP1Q13829 316 aa18.57■□□□□ 0.56
LDB3-208ENST00000623007 TYW1BQ6NUM6 668 aa18.57■□□□□ 0.56
LDB3-208ENST00000623007 C11orf57Q6ZUT1 292 aaPredicted RBP18.57■□□□□ 0.56
LDB3-208ENST00000623007 SH3BP5LQ7L8J4 393 aa18.57■□□□□ 0.56
LDB3-208ENST00000623007 PLA2G4DQ86XP0 818 aa18.57■□□□□ 0.56
LDB3-208ENST00000623007 ZFPM1Q8IX07 1006 aa18.57■□□□□ 0.56
LDB3-208ENST00000623007 CUEDC2Q9H467 287 aa18.57■□□□□ 0.56
LDB3-208ENST00000623007 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.57■□□□□ 0.56
LDB3-208ENST00000623007 RIC8AQ9NPQ8 531 aa18.57■□□□□ 0.56
LDB3-208ENST00000623007 ZNF70Q9UC06 446 aaPredicted RBP18.57■□□□□ 0.56
LDB3-208ENST00000623007 BRCA1P38398 1863 aaKnown RBP18.57■□□□□ 0.56
LDB3-208ENST00000623007 VWA3AA6NCI4 1184 aa18.57■□□□□ 0.56
LDB3-208ENST00000623007 FAM205CA6NFA0 338 aa18.57■□□□□ 0.56
LDB3-208ENST00000623007 RAD17O75943 681 aa18.57■□□□□ 0.56
LDB3-208ENST00000623007 SLFN13Q68D06 897 aa18.57■□□□□ 0.56
LDB3-208ENST00000623007 DHX40Q8IX18 779 aaKnown RBP18.57■□□□□ 0.56
LDB3-208ENST00000623007 ADGRF4Q8IZF3 695 aa18.57■□□□□ 0.56
LDB3-208ENST00000623007 SYMPKQ92797 1274 aaKnown RBP18.57■□□□□ 0.56
LDB3-208ENST00000623007 CUL5Q93034 780 aa18.57■□□□□ 0.56
LDB3-208ENST00000623007 GSDMAQ96QA5 445 aa18.57■□□□□ 0.56
LDB3-208ENST00000623007 FRMPD2Q68DX3 1309 aaPredicted RBP18.56■□□□□ 0.56
LDB3-208ENST00000623007 ACTN4O43707 911 aaKnown RBP18.56■□□□□ 0.56
LDB3-208ENST00000623007 SARSP49591 514 aaKnown RBP18.56■□□□□ 0.56
LDB3-208ENST00000623007 ZNF75DP51815 510 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms