RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 PARP4Q9UKK3 1724 aaKnown RBP11.39□□□□□ -0.59
VPS39-214ENST00000614932 CTAGE9A4FU28 777 aa11.39□□□□□ -0.59
VPS39-214ENST00000614932 PSMA5P28066 241 aa11.39□□□□□ -0.59
VPS39-214ENST00000614932 UBASH3AP57075 661 aa11.39□□□□□ -0.59
VPS39-214ENST00000614932 IFIT5Q13325 482 aaKnown RBP11.39□□□□□ -0.59
VPS39-214ENST00000614932 CDC37Q16543 378 aaPredicted RBP11.39□□□□□ -0.59
VPS39-214ENST00000614932 TTC39AQ5SRH9 613 aa11.39□□□□□ -0.59
VPS39-214ENST00000614932 AKNAD1Q5T1N1 836 aa11.39□□□□□ -0.59
VPS39-214ENST00000614932 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.39□□□□□ -0.59
VPS39-214ENST00000614932 Q6ZUG5 572 aa11.39□□□□□ -0.59
VPS39-214ENST00000614932 STOX1Q6ZVD7 989 aa11.39□□□□□ -0.59
VPS39-214ENST00000614932 ZFATQ9P243 1243 aa11.39□□□□□ -0.59
VPS39-214ENST00000614932 CFAP45Q9UL16 551 aa11.39□□□□□ -0.59
VPS39-214ENST00000614932 A0A1B0GVG6 124 aa11.39□□□□□ -0.59
VPS39-214ENST00000614932 ZNF24P17028 368 aa11.39□□□□□ -0.59
VPS39-214ENST00000614932 ITGA6P23229 1130 aa11.39□□□□□ -0.59
VPS39-214ENST00000614932 CDC25CP30307 473 aa11.39□□□□□ -0.59
VPS39-214ENST00000614932 CCDC38Q502W7 563 aa11.39□□□□□ -0.59
VPS39-214ENST00000614932 METTL24Q5JXM2 366 aa11.39□□□□□ -0.59
VPS39-214ENST00000614932 LDHAL6AQ6ZMR3 332 aa11.39□□□□□ -0.59
VPS39-214ENST00000614932 RAB11FIP4Q86YS3 637 aa11.39□□□□□ -0.59
VPS39-214ENST00000614932 ZNF570Q96NI8 536 aa11.39□□□□□ -0.59
VPS39-214ENST00000614932 NEK1Q96PY6 1258 aa11.39□□□□□ -0.59
VPS39-214ENST00000614932 ZCWPW1Q9H0M4 648 aa11.39□□□□□ -0.59
VPS39-214ENST00000614932 M0R2C6 588 aa11.38□□□□□ -0.59
VPS39-214ENST00000614932 CYP19A1P11511 503 aaPredicted RBP11.38□□□□□ -0.59
VPS39-214ENST00000614932 CTCFP49711 727 aaPredicted RBP11.38□□□□□ -0.59
VPS39-214ENST00000614932 USP14P54578 494 aa11.38□□□□□ -0.59
VPS39-214ENST00000614932 MYBPC2Q14324 1141 aa11.38□□□□□ -0.59
VPS39-214ENST00000614932 SFMBT2Q5VUG0 894 aa11.38□□□□□ -0.59
VPS39-214ENST00000614932 CCHCR1Q8TD31 782 aa11.38□□□□□ -0.59
VPS39-214ENST00000614932 BRF1Q92994 677 aa11.38□□□□□ -0.59
VPS39-214ENST00000614932 CNNM1Q9NRU3 951 aa11.38□□□□□ -0.59
VPS39-214ENST00000614932 BAIAP2L1Q9UHR4 511 aa11.38□□□□□ -0.59
VPS39-214ENST00000614932 A0A1B0GVL5 298 aa11.38□□□□□ -0.59
VPS39-214ENST00000614932 OPLAHO14841 1288 aa11.38□□□□□ -0.59
VPS39-214ENST00000614932 MYO1BO43795 1136 aa11.38□□□□□ -0.59
VPS39-214ENST00000614932 CREB3O43889 395 aa11.38□□□□□ -0.59
VPS39-214ENST00000614932 LUC7L3O95232 432 aaKnown RBP11.38□□□□□ -0.59
VPS39-214ENST00000614932 CCDC175P0C221 793 aa11.38□□□□□ -0.59
VPS39-214ENST00000614932 LMOD1P29536 600 aaPredicted RBP11.38□□□□□ -0.59
VPS39-214ENST00000614932 ZAP70P43403 619 aa11.38□□□□□ -0.59
VPS39-214ENST00000614932 FAM160A1Q05DH4 1040 aa11.38□□□□□ -0.59
VPS39-214ENST00000614932 CCDC15Q0P6D6 951 aa11.38□□□□□ -0.59
VPS39-214ENST00000614932 MYBPC3Q14896 1274 aa11.38□□□□□ -0.59
VPS39-214ENST00000614932 NCAPHQ15003 741 aa11.38□□□□□ -0.59
VPS39-214ENST00000614932 DPCR1Q3MIW9 517 aa11.38□□□□□ -0.59
VPS39-214ENST00000614932 NLRP10Q86W26 655 aa11.38□□□□□ -0.59
VPS39-214ENST00000614932 FAM114A1Q8IWE2 563 aa11.38□□□□□ -0.59
VPS39-214ENST00000614932 TM6SF1Q9BZW5 370 aa11.38□□□□□ -0.59
VPS39-214ENST00000614932 GOLPH3LQ9H4A5 285 aa11.38□□□□□ -0.59
VPS39-214ENST00000614932 MRPL44Q9H9J2 332 aaKnown RBP11.38□□□□□ -0.59
VPS39-214ENST00000614932 TOGARAM1Q9Y4F4 1720 aa11.38□□□□□ -0.59
VPS39-214ENST00000614932 MAP3K15Q6ZN16 1313 aa11.37□□□□□ -0.59
VPS39-214ENST00000614932 IRS4O14654 1257 aaPredicted RBP11.37□□□□□ -0.59
VPS39-214ENST00000614932 LSP1P33241 339 aa11.37□□□□□ -0.59
VPS39-214ENST00000614932 MPP3Q13368 585 aa11.37□□□□□ -0.59
VPS39-214ENST00000614932 SPECC1Q5M775 1068 aa11.37□□□□□ -0.59
VPS39-214ENST00000614932 PPP1R15BQ5SWA1 713 aa11.37□□□□□ -0.59
VPS39-214ENST00000614932 GIGYF2Q6Y7W6 1299 aaKnown RBP11.37□□□□□ -0.59
VPS39-214ENST00000614932 ZBTB38Q8NAP3 1195 aaPredicted RBP11.37□□□□□ -0.59
VPS39-214ENST00000614932 AGAP3Q96P47 875 aa11.37□□□□□ -0.59
VPS39-214ENST00000614932 GPHNQ9NQX3 736 aaPredicted RBP11.37□□□□□ -0.59
VPS39-214ENST00000614932 DNM1LO00429 736 aa11.37□□□□□ -0.59
VPS39-214ENST00000614932 SERPINC1P01008 464 aa11.37□□□□□ -0.59
VPS39-214ENST00000614932 CFAP100Q494V2 611 aa11.37□□□□□ -0.59
VPS39-214ENST00000614932 ANKRD20A8PQ5CZ79 823 aa11.37□□□□□ -0.59
VPS39-214ENST00000614932 ZNF569Q5MCW4 686 aa11.37□□□□□ -0.59
VPS39-214ENST00000614932 NUGGCQ68CJ6 796 aa11.37□□□□□ -0.59
VPS39-214ENST00000614932 ARMC9Q7Z3E5 817 aa11.37□□□□□ -0.59
VPS39-214ENST00000614932 APLFQ8IW19 511 aaPredicted RBP11.37□□□□□ -0.59
VPS39-214ENST00000614932 ENGASEQ8NFI3 743 aa11.37□□□□□ -0.59
VPS39-214ENST00000614932 OSBP2Q969R2 916 aa11.37□□□□□ -0.59
VPS39-214ENST00000614932 CCT8L2Q96SF2 557 aa11.37□□□□□ -0.59
VPS39-214ENST00000614932 DESI2Q9BSY9 194 aa11.37□□□□□ -0.59
VPS39-214ENST00000614932 SELENOOQ9BVL4 669 aa11.37□□□□□ -0.59
VPS39-214ENST00000614932 LZTFL1Q9NQ48 299 aa11.37□□□□□ -0.59
VPS39-214ENST00000614932 ANKIB1Q9P2G1 1089 aa11.37□□□□□ -0.59
VPS39-214ENST00000614932 IKBKBO14920 756 aa11.36□□□□□ -0.59
VPS39-214ENST00000614932 KCNQ2O43526 872 aa11.36□□□□□ -0.59
VPS39-214ENST00000614932 EPB41P11171 864 aaKnown RBP11.36□□□□□ -0.59
VPS39-214ENST00000614932 GJA8P48165 433 aa11.36□□□□□ -0.59
VPS39-214ENST00000614932 ELF3P78545 371 aaPredicted RBP11.36□□□□□ -0.59
VPS39-214ENST00000614932 SYCP3Q8IZU3 236 aa11.36□□□□□ -0.59
VPS39-214ENST00000614932 GDAP1L1Q96MZ0 367 aa11.36□□□□□ -0.59
VPS39-214ENST00000614932 NCOA5Q9HCD5 579 aaKnown RBP11.36□□□□□ -0.59
VPS39-214ENST00000614932 NOP53Q9NZM5 478 aaKnown RBP11.36□□□□□ -0.59
VPS39-214ENST00000614932 MAST3O60307 1309 aa11.36□□□□□ -0.59
VPS39-214ENST00000614932 TARSL2A2RTX5 802 aaKnown RBP11.36□□□□□ -0.59
VPS39-214ENST00000614932 PCCAP05165 728 aaPredicted RBP11.36□□□□□ -0.59
VPS39-214ENST00000614932 NAT1P18440 290 aa11.36□□□□□ -0.59
VPS39-214ENST00000614932 CEBPZQ03701 1054 aaKnown RBP11.36□□□□□ -0.59
VPS39-214ENST00000614932 DYNC1I2Q13409 638 aaKnown RBP11.36□□□□□ -0.59
VPS39-214ENST00000614932 NLRP14Q86W24 1093 aa11.36□□□□□ -0.59
VPS39-214ENST00000614932 TTLL11Q8NHH1 800 aa11.36□□□□□ -0.59
VPS39-214ENST00000614932 MYCBPAPQ8TBZ2 947 aa11.36□□□□□ -0.59
VPS39-214ENST00000614932 DPF2Q92785 391 aa11.36□□□□□ -0.59
VPS39-214ENST00000614932 SLC5A4Q9NY91 659 aa11.36□□□□□ -0.59
VPS39-214ENST00000614932 TNS2Q63HR2 1409 aa11.36□□□□□ -0.59
VPS39-214ENST00000614932 RASSF10A6NK89 507 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms