RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 SPATC1LQ9H0A9 340 aa19.36■□□□□ 0.69
CCDC28A-202ENST00000611852 GPCPD1Q9NPB8 672 aa19.36■□□□□ 0.69
CCDC28A-202ENST00000611852 TNPO2O14787 897 aaKnown RBP19.35■□□□□ 0.69
CCDC28A-202ENST00000611852 GOLGA8HP0CJ92 632 aa19.35■□□□□ 0.69
CCDC28A-202ENST00000611852 CPA1P15085 419 aa19.35■□□□□ 0.69
CCDC28A-202ENST00000611852 LIFRP42702 1097 aa19.35■□□□□ 0.69
CCDC28A-202ENST00000611852 TMTC2Q8N394 836 aa19.35■□□□□ 0.69
CCDC28A-202ENST00000611852 TCEANC2Q96MN5 208 aa19.35■□□□□ 0.69
CCDC28A-202ENST00000611852 MOV10L1Q9BXT6 1211 aaKnown RBP19.35■□□□□ 0.69
CCDC28A-202ENST00000611852 SLC38A10Q9HBR0 1119 aa19.35■□□□□ 0.69
CCDC28A-202ENST00000611852 ZNF214Q9UL59 606 aaPredicted RBP19.35■□□□□ 0.69
CCDC28A-202ENST00000611852 PRR12Q9ULL5 1215 aa19.35■□□□□ 0.69
CCDC28A-202ENST00000611852 PSMA5P28066 241 aa19.35■□□□□ 0.69
CCDC28A-202ENST00000611852 MAPK4P31152 587 aa19.35■□□□□ 0.69
CCDC28A-202ENST00000611852 SLC16A2P36021 539 aa19.35■□□□□ 0.69
CCDC28A-202ENST00000611852 TROAPQ12815 778 aa19.35■□□□□ 0.69
CCDC28A-202ENST00000611852 PLS1Q14651 629 aa19.35■□□□□ 0.69
CCDC28A-202ENST00000611852 DOCK3Q8IZD9 2030 aa19.35■□□□□ 0.69
CCDC28A-202ENST00000611852 ATP2A1O14983 1001 aa19.34■□□□□ 0.69
CCDC28A-202ENST00000611852 ZBED4O75132 1171 aa19.34■□□□□ 0.69
CCDC28A-202ENST00000611852 PARP1P09874 1014 aaKnown RBP19.34■□□□□ 0.69
CCDC28A-202ENST00000611852 FDX1P10109 184 aa19.34■□□□□ 0.69
CCDC28A-202ENST00000611852 PKN2Q16513 984 aaKnown RBP19.34■□□□□ 0.69
CCDC28A-202ENST00000611852 ASPRV1Q53RT3 343 aa19.34■□□□□ 0.69
CCDC28A-202ENST00000611852 BLOC1S2Q6QNY1 142 aa19.34■□□□□ 0.69
CCDC28A-202ENST00000611852 CATIPQ7Z7H3 387 aa19.34■□□□□ 0.69
CCDC28A-202ENST00000611852 CCAR1Q8IX12 1150 aaKnown RBP19.34■□□□□ 0.69
CCDC28A-202ENST00000611852 SRRDQ9UH36 339 aa19.34■□□□□ 0.69
CCDC28A-202ENST00000611852 CASTP20810 708 aaKnown RBP19.33■□□□□ 0.68
CCDC28A-202ENST00000611852 HOXD10P28358 340 aa19.33■□□□□ 0.68
CCDC28A-202ENST00000611852 STAT3P40763 770 aa19.33■□□□□ 0.68
CCDC28A-202ENST00000611852 SYDE2Q5VT97 1194 aa19.33■□□□□ 0.68
CCDC28A-202ENST00000611852 ZNF654Q8IZM8 581 aa19.33■□□□□ 0.68
CCDC28A-202ENST00000611852 SHCBP1Q8NEM2 672 aa19.33■□□□□ 0.68
CCDC28A-202ENST00000611852 COA7Q96BR5 231 aa19.33■□□□□ 0.68
CCDC28A-202ENST00000611852 MCOLN1Q9GZU1 580 aa19.33■□□□□ 0.68
CCDC28A-202ENST00000611852 PTPN22Q9Y2R2 807 aa19.33■□□□□ 0.68
CCDC28A-202ENST00000611852 CCDC69A6NI79 296 aa19.32■□□□□ 0.68
CCDC28A-202ENST00000611852 ERCC3P19447 782 aa19.32■□□□□ 0.68
CCDC28A-202ENST00000611852 RPS6KB1P23443 525 aa19.32■□□□□ 0.68
CCDC28A-202ENST00000611852 OAZ1P54368 228 aa19.32■□□□□ 0.68
CCDC28A-202ENST00000611852 GRM4Q14833 912 aa19.32■□□□□ 0.68
CCDC28A-202ENST00000611852 NFXL1Q6ZNB6 911 aa19.32■□□□□ 0.68
CCDC28A-202ENST00000611852 GPR142Q7Z601 462 aa19.32■□□□□ 0.68
CCDC28A-202ENST00000611852 SGMS1Q86VZ5 419 aa19.32■□□□□ 0.68
CCDC28A-202ENST00000611852 RIOX2Q8IUF8 465 aa19.32■□□□□ 0.68
CCDC28A-202ENST00000611852 STAG2Q8N3U4 1231 aa19.32■□□□□ 0.68
CCDC28A-202ENST00000611852 TEX13BQ9BXU2 312 aa19.32■□□□□ 0.68
CCDC28A-202ENST00000611852 CPVLQ9H3G5 476 aa19.32■□□□□ 0.68
CCDC28A-202ENST00000611852 RAVER2Q9HCJ3 691 aaKnown RBP19.32■□□□□ 0.68
CCDC28A-202ENST00000611852 ZSWIM6Q9HCJ5 1215 aa19.32■□□□□ 0.68
CCDC28A-202ENST00000611852 MAD2L2Q9UI95 211 aa19.32■□□□□ 0.68
CCDC28A-202ENST00000611852 CTDP1Q9Y5B0 961 aaPredicted RBP19.32■□□□□ 0.68
CCDC28A-202ENST00000611852 ZNF536O15090 1300 aa19.32■□□□□ 0.68
CCDC28A-202ENST00000611852 PALM3A6NDB9 673 aaPredicted RBP19.31■□□□□ 0.68
CCDC28A-202ENST00000611852 DDAH1O94760 285 aa19.31■□□□□ 0.68
CCDC28A-202ENST00000611852 SLC25A27O95847 323 aa19.31■□□□□ 0.68
CCDC28A-202ENST00000611852 PRMT2P55345 433 aa19.31■□□□□ 0.68
CCDC28A-202ENST00000611852 ANAPC15P60006 121 aa19.31■□□□□ 0.68
CCDC28A-202ENST00000611852 PRKCZQ05513 592 aa19.31■□□□□ 0.68
CCDC28A-202ENST00000611852 FBXO46Q6PJ61 603 aaPredicted RBP19.31■□□□□ 0.68
CCDC28A-202ENST00000611852 PLEKHH3Q7Z736 793 aa19.31■□□□□ 0.68
CCDC28A-202ENST00000611852 CPXCR1Q8N123 301 aa19.31■□□□□ 0.68
CCDC28A-202ENST00000611852 MYL10Q9BUA6 226 aa19.31■□□□□ 0.68
CCDC28A-202ENST00000611852 TM6SF1Q9BZW5 370 aa19.31■□□□□ 0.68
CCDC28A-202ENST00000611852 UBA5Q9GZZ9 404 aa19.31■□□□□ 0.68
CCDC28A-202ENST00000611852 RANBP17Q9H2T7 1088 aaKnown RBP19.31■□□□□ 0.68
CCDC28A-202ENST00000611852 GJD2Q9UKL4 321 aa19.31■□□□□ 0.68
CCDC28A-202ENST00000611852 GABRQQ9UN88 632 aa19.31■□□□□ 0.68
CCDC28A-202ENST00000611852 SNAP25P60880 206 aa19.3■□□□□ 0.68
CCDC28A-202ENST00000611852 WDR78Q5VTH9 848 aa19.3■□□□□ 0.68
CCDC28A-202ENST00000611852 SNRNP48Q6IEG0 339 aaKnown RBP19.3■□□□□ 0.68
CCDC28A-202ENST00000611852 RUFY3Q7L099 469 aa19.3■□□□□ 0.68
CCDC28A-202ENST00000611852 NCAPG2Q86XI2 1143 aa19.3■□□□□ 0.68
CCDC28A-202ENST00000611852 NUP133Q8WUM0 1156 aa19.3■□□□□ 0.68
CCDC28A-202ENST00000611852 MAP3K14Q99558 947 aa19.3■□□□□ 0.68
CCDC28A-202ENST00000611852 MROH8Q9H579 483 aa19.3■□□□□ 0.68
CCDC28A-202ENST00000611852 SLC12A7Q9Y666 1083 aa19.3■□□□□ 0.68
CCDC28A-202ENST00000611852 KLRF2D3W0D1 207 aa19.3■□□□□ 0.68
CCDC28A-202ENST00000611852 FLT3LGP49771 235 aa19.3■□□□□ 0.68
CCDC28A-202ENST00000611852 FBXL16Q8N461 479 aa19.3■□□□□ 0.68
CCDC28A-202ENST00000611852 IL17RAQ96F46 866 aa19.3■□□□□ 0.68
CCDC28A-202ENST00000611852 RIPK3Q9Y572 518 aa19.3■□□□□ 0.68
CCDC28A-202ENST00000611852 CYP46A1Q9Y6A2 500 aa19.3■□□□□ 0.68
CCDC28A-202ENST00000611852 PTCH2Q9Y6C5 1203 aa19.3■□□□□ 0.68
CCDC28A-202ENST00000611852 COPB2P35606 906 aa19.29■□□□□ 0.68
CCDC28A-202ENST00000611852 FGD1P98174 961 aa19.29■□□□□ 0.68
CCDC28A-202ENST00000611852 CCDC174Q6PII3 467 aa19.29■□□□□ 0.68
CCDC28A-202ENST00000611852 Q6ZUG5 572 aa19.29■□□□□ 0.68
CCDC28A-202ENST00000611852 ADGRF4Q8IZF3 695 aa19.29■□□□□ 0.68
CCDC28A-202ENST00000611852 AGBL1Q96MI9 1066 aa19.29■□□□□ 0.68
CCDC28A-202ENST00000611852 AGXT2Q9BYV1 514 aa19.29■□□□□ 0.68
CCDC28A-202ENST00000611852 UPF3BQ9BZI7 483 aaKnown RBP19.29■□□□□ 0.68
CCDC28A-202ENST00000611852 CWC22Q9HCG8 908 aaKnown RBP19.29■□□□□ 0.68
CCDC28A-202ENST00000611852 BRPF3Q9ULD4 1205 aa19.29■□□□□ 0.68
CCDC28A-202ENST00000611852 PLXNB2O15031 1838 aa19.29■□□□□ 0.68
CCDC28A-202ENST00000611852 HTTP42858 3142 aa19.28■□□□□ 0.68
CCDC28A-202ENST00000611852 CALM1P0DP23 149 aa19.28■□□□□ 0.68
CCDC28A-202ENST00000611852 CALM2P0DP24 149 aa19.28■□□□□ 0.68
CCDC28A-202ENST00000611852 CALM3P0DP25 149 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms