RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 REPS2Q8NFH8 660 aa19.07■□□□□ 0.64
LSM4-206ENST00000600289 USP6NLQ92738 828 aa19.07■□□□□ 0.64
LSM4-206ENST00000600289 NUP88Q99567 741 aaPredicted RBP19.07■□□□□ 0.64
LSM4-206ENST00000600289 SLF1Q9BQI6 1058 aa19.07■□□□□ 0.64
LSM4-206ENST00000600289 KRT23Q9C075 422 aa19.07■□□□□ 0.64
LSM4-206ENST00000600289 PRDM6Q9NQX0 595 aa19.07■□□□□ 0.64
LSM4-206ENST00000600289 FBXO28Q9NVF7 368 aa19.07■□□□□ 0.64
LSM4-206ENST00000600289 FEM1BQ9UK73 627 aa19.07■□□□□ 0.64
LSM4-206ENST00000600289 VWA5AO00534 786 aa19.06■□□□□ 0.64
LSM4-206ENST00000600289 RAD21O60216 631 aa19.06■□□□□ 0.64
LSM4-206ENST00000600289 XRCC5P13010 732 aaKnown RBP19.06■□□□□ 0.64
LSM4-206ENST00000600289 MORN1Q5T089 497 aa19.06■□□□□ 0.64
LSM4-206ENST00000600289 RCSD1Q6JBY9 416 aa19.06■□□□□ 0.64
LSM4-206ENST00000600289 PLEKHH3Q7Z736 793 aa19.06■□□□□ 0.64
LSM4-206ENST00000600289 U2AF1L4Q8WU68 220 aaKnown RBP19.06■□□□□ 0.64
LSM4-206ENST00000600289 MOV10L1Q9BXT6 1211 aaKnown RBP19.06■□□□□ 0.64
LSM4-206ENST00000600289 RNF208Q9H0X6 261 aa19.06■□□□□ 0.64
LSM4-206ENST00000600289 ATP2A1O14983 1001 aa19.05■□□□□ 0.64
LSM4-206ENST00000600289 ADCY3O60266 1144 aa19.05■□□□□ 0.64
LSM4-206ENST00000600289 CYP21A2P08686 494 aa19.05■□□□□ 0.64
LSM4-206ENST00000600289 FDX1P10109 184 aa19.05■□□□□ 0.64
LSM4-206ENST00000600289 TMEM132BQ14DG7 1078 aa19.05■□□□□ 0.64
LSM4-206ENST00000600289 LRIT3Q3SXY7 679 aa19.05■□□□□ 0.64
LSM4-206ENST00000600289 DGKHQ86XP1 1220 aa19.05■□□□□ 0.64
LSM4-206ENST00000600289 CCAR1Q8IX12 1150 aaKnown RBP19.05■□□□□ 0.64
LSM4-206ENST00000600289 DCAF4Q8WV16 495 aa19.05■□□□□ 0.64
LSM4-206ENST00000600289 ANKS1AQ92625 1134 aa19.05■□□□□ 0.64
LSM4-206ENST00000600289 NUDT12Q9BQG2 462 aa19.05■□□□□ 0.64
LSM4-206ENST00000600289 TMEM47Q9BQJ4 181 aa19.05■□□□□ 0.64
LSM4-206ENST00000600289 LSG1Q9H089 658 aaKnown RBP19.05■□□□□ 0.64
LSM4-206ENST00000600289 MROH8Q9H579 483 aa19.05■□□□□ 0.64
LSM4-206ENST00000600289 ZNF214Q9UL59 606 aaPredicted RBP19.05■□□□□ 0.64
LSM4-206ENST00000600289 SLC15A5A6NIM6 579 aa19.04■□□□□ 0.64
LSM4-206ENST00000600289 B4E1Z4 1266 aa19.04■□□□□ 0.64
LSM4-206ENST00000600289 KDM4AO75164 1064 aa19.04■□□□□ 0.64
LSM4-206ENST00000600289 CDC45O75419 566 aa19.04■□□□□ 0.64
LSM4-206ENST00000600289 SLC25A27O95847 323 aa19.04■□□□□ 0.64
LSM4-206ENST00000600289 PTPREP23469 700 aa19.04■□□□□ 0.64
LSM4-206ENST00000600289 COPB2P35606 906 aa19.04■□□□□ 0.64
LSM4-206ENST00000600289 GRB14Q14449 540 aa19.04■□□□□ 0.64
LSM4-206ENST00000600289 FAM160B2Q86V87 743 aa19.04■□□□□ 0.64
LSM4-206ENST00000600289 IQCA1Q86XH1 822 aa19.04■□□□□ 0.64
LSM4-206ENST00000600289 RIOX2Q8IUF8 465 aa19.04■□□□□ 0.64
LSM4-206ENST00000600289 TRMT44Q8IYL2 757 aaKnown RBP19.04■□□□□ 0.64
LSM4-206ENST00000600289 FRMPD3Q5JV73 1810 aa19.04■□□□□ 0.64
LSM4-206ENST00000600289 STRNO43815 780 aa19.03■□□□□ 0.64
LSM4-206ENST00000600289 RGS2P41220 211 aa19.03■□□□□ 0.64
LSM4-206ENST00000600289 SLC1A4P43007 532 aa19.03■□□□□ 0.64
LSM4-206ENST00000600289 STAT2P52630 851 aa19.03■□□□□ 0.64
LSM4-206ENST00000600289 OAZ1P54368 228 aa19.03■□□□□ 0.64
LSM4-206ENST00000600289 CASC1Q6TDU7 716 aa19.03■□□□□ 0.64
LSM4-206ENST00000600289 KIAA1211Q6ZU35 1233 aa19.03■□□□□ 0.64
LSM4-206ENST00000600289 ABRAQ8N0Z2 381 aa19.03■□□□□ 0.64
LSM4-206ENST00000600289 SLC38A10Q9HBR0 1119 aa19.03■□□□□ 0.64
LSM4-206ENST00000600289 ZSWIM5Q9P217 1185 aa19.03■□□□□ 0.64
LSM4-206ENST00000600289 RBM8AQ9Y5S9 174 aaKnown RBP19.03■□□□□ 0.64
LSM4-206ENST00000600289 SGPL1O95470 568 aa19.02■□□□□ 0.64
LSM4-206ENST00000600289 HOXC6P09630 235 aa19.02■□□□□ 0.64
LSM4-206ENST00000600289 SNHG28P0DPA3 235 aa19.02■□□□□ 0.64
LSM4-206ENST00000600289 ERCC3P19447 782 aa19.02■□□□□ 0.64
LSM4-206ENST00000600289 UBXN2AP68543 259 aa19.02■□□□□ 0.64
LSM4-206ENST00000600289 MAP2K5Q13163 448 aa19.02■□□□□ 0.64
LSM4-206ENST00000600289 CHURC1Q8WUH1 139 aa19.02■□□□□ 0.64
LSM4-206ENST00000600289 ZSCAN10Q96SZ4 725 aaPredicted RBP19.02■□□□□ 0.64
LSM4-206ENST00000600289 APBA2Q99767 749 aa19.02■□□□□ 0.64
LSM4-206ENST00000600289 UNC93B1Q9H1C4 597 aa19.02■□□□□ 0.64
LSM4-206ENST00000600289 IVNS1ABPQ9Y6Y0 642 aa19.02■□□□□ 0.64
LSM4-206ENST00000600289 HMGCRP04035 888 aa19.01■□□□□ 0.63
LSM4-206ENST00000600289 ELNP15502 786 aa19.01■□□□□ 0.63
LSM4-206ENST00000600289 MCCP23508 829 aa19.01■□□□□ 0.63
LSM4-206ENST00000600289 TRDNQ13061 729 aa19.01■□□□□ 0.63
LSM4-206ENST00000600289 BTNL9Q6UXG8 535 aa19.01■□□□□ 0.63
LSM4-206ENST00000600289 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.01■□□□□ 0.631e-7■■■□□ 16
LSM4-206ENST00000600289 TEX13BQ9BXU2 312 aa19.01■□□□□ 0.63
LSM4-206ENST00000600289 CWC22Q9HCG8 908 aaKnown RBP19.01■□□□□ 0.63
LSM4-206ENST00000600289 TNKSO95271 1327 aa19■□□□□ 0.63
LSM4-206ENST00000600289 MYH6P13533 1939 aa19■□□□□ 0.63
LSM4-206ENST00000600289 TMEM232C9JQI7 657 aa19■□□□□ 0.63
LSM4-206ENST00000600289 E7EWF7 191 aa19■□□□□ 0.63
LSM4-206ENST00000600289 ZBED4O75132 1171 aa19■□□□□ 0.63
LSM4-206ENST00000600289 INHAP05111 366 aa19■□□□□ 0.63
LSM4-206ENST00000600289 PDHBP11177 359 aa19■□□□□ 0.63
LSM4-206ENST00000600289 STAT3P40763 770 aa19■□□□□ 0.63
LSM4-206ENST00000600289 PLS1Q14651 629 aa19■□□□□ 0.63
LSM4-206ENST00000600289 ENAHQ8N8S7 591 aaPredicted RBP19■□□□□ 0.63
LSM4-206ENST00000600289 KIFC2Q96AC6 838 aa19■□□□□ 0.63
LSM4-206ENST00000600289 ZKSCAN3Q9BRR0 538 aa19■□□□□ 0.63
LSM4-206ENST00000600289 RPTORQ8N122 1335 aa19■□□□□ 0.63
LSM4-206ENST00000600289 CAPN2P17655 700 aa18.99■□□□□ 0.63
LSM4-206ENST00000600289 CYP2B6P20813 491 aa18.99■□□□□ 0.63
LSM4-206ENST00000600289 NECTIN1Q15223 517 aa18.99■□□□□ 0.63
LSM4-206ENST00000600289 WDR78Q5VTH9 848 aa18.99■□□□□ 0.63
LSM4-206ENST00000600289 KCTD1Q719H9 257 aa18.99■□□□□ 0.63
LSM4-206ENST00000600289 NCOA7Q8NI08 942 aa18.99■□□□□ 0.63
LSM4-206ENST00000600289 TRIB2Q92519 343 aa18.99■□□□□ 0.63
LSM4-206ENST00000600289 UBAC1Q9BSL1 405 aa18.99■□□□□ 0.63
LSM4-206ENST00000600289 IGHA2P01877 340 aa18.98■□□□□ 0.63
LSM4-206ENST00000600289 ZNF543Q08ER8 600 aa18.98■□□□□ 0.63
LSM4-206ENST00000600289 SEC23AQ15436 765 aa18.98■□□□□ 0.63
LSM4-206ENST00000600289 MAP3K21Q5TCX8 1036 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms