RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 A0A1W2PQY0 241 aa14.97□□□□□ -0.01
TRIM28-212ENST00000597995 GSG1L2A8MUP6 293 aa14.97□□□□□ -0.01
TRIM28-212ENST00000597995 F5H6K3 240 aa14.97□□□□□ -0.01
TRIM28-212ENST00000597995 ATP2A1O14983 1001 aa14.97□□□□□ -0.01
TRIM28-212ENST00000597995 RAD21O60216 631 aa14.97□□□□□ -0.01
TRIM28-212ENST00000597995 ADAMTS4O75173 837 aa14.97□□□□□ -0.01
TRIM28-212ENST00000597995 RASA1P20936 1047 aa14.97□□□□□ -0.01
TRIM28-212ENST00000597995 ITGB8P26012 769 aa14.97□□□□□ -0.01
TRIM28-212ENST00000597995 KLRC3Q07444 240 aa14.97□□□□□ -0.01
TRIM28-212ENST00000597995 MAMDC4Q6UXC1 1216 aa14.97□□□□□ -0.01
TRIM28-212ENST00000597995 ANKRD33Q7Z3H0 272 aa14.97□□□□□ -0.01
TRIM28-212ENST00000597995 ZNF467Q7Z7K2 595 aaPredicted RBP14.97□□□□□ -0.01
TRIM28-212ENST00000597995 PRPF38AQ8NAV1 312 aaKnown RBP14.97□□□□□ -0.01
TRIM28-212ENST00000597995 NUP133Q8WUM0 1156 aa14.97□□□□□ -0.01
TRIM28-212ENST00000597995 DDX11Q96FC9 970 aa14.97□□□□□ -0.01
TRIM28-212ENST00000597995 MKNK2Q9HBH9 465 aa14.97□□□□□ -0.01
TRIM28-212ENST00000597995 ECHDC1Q9NTX5 307 aa14.97□□□□□ -0.01
TRIM28-212ENST00000597995 FAM184BQ9ULE4 1060 aa14.97□□□□□ -0.01
TRIM28-212ENST00000597995 GREB1LQ9C091 1923 aaPredicted RBP14.96□□□□□ -0.01
TRIM28-212ENST00000597995 TMEM265A0A087WTH1 108 aa14.96□□□□□ -0.01
TRIM28-212ENST00000597995 MOXD2PA6NHM9 499 aa14.96□□□□□ -0.01
TRIM28-212ENST00000597995 SNAI1O95863 264 aaPredicted RBP14.96□□□□□ -0.01
TRIM28-212ENST00000597995 RAG1P15918 1043 aa14.96□□□□□ -0.01
TRIM28-212ENST00000597995 SNRNP48Q6IEG0 339 aaKnown RBP14.96□□□□□ -0.01
TRIM28-212ENST00000597995 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.96□□□□□ -0.01
TRIM28-212ENST00000597995 KLHDC9Q8NEP7 349 aa14.96□□□□□ -0.01
TRIM28-212ENST00000597995 ZNF287Q9HBT7 754 aa14.96□□□□□ -0.01
TRIM28-212ENST00000597995 SYNPO2Q9UMS6 1093 aa14.96□□□□□ -0.01
TRIM28-212ENST00000597995 PQBP1O60828 265 aaKnown RBP14.95□□□□□ -0.02
TRIM28-212ENST00000597995 ZBED4O75132 1171 aa14.95□□□□□ -0.02
TRIM28-212ENST00000597995 DUSP11O75319 330 aaKnown RBP14.95□□□□□ -0.02
TRIM28-212ENST00000597995 NDUFB10O96000 172 aa14.95□□□□□ -0.02
TRIM28-212ENST00000597995 ACLYP53396 1101 aa14.95□□□□□ -0.02
TRIM28-212ENST00000597995 KBTBD3Q8NAB2 608 aa14.95□□□□□ -0.02
TRIM28-212ENST00000597995 APPBP2Q92624 585 aa14.95□□□□□ -0.02
TRIM28-212ENST00000597995 MKL1Q969V6 931 aa14.95□□□□□ -0.02
TRIM28-212ENST00000597995 RNPC3Q96LT9 517 aaKnown RBP14.95□□□□□ -0.02
TRIM28-212ENST00000597995 CRBNQ96SW2 442 aa14.95□□□□□ -0.02
TRIM28-212ENST00000597995 NUP88Q99567 741 aaPredicted RBP14.95□□□□□ -0.02
TRIM28-212ENST00000597995 TTYH1Q9H313 450 aaPredicted RBP14.95□□□□□ -0.02
TRIM28-212ENST00000597995 STARD7Q9NQZ5 370 aa14.95□□□□□ -0.02
TRIM28-212ENST00000597995 TMEM39AQ9NV64 488 aa14.95□□□□□ -0.02
TRIM28-212ENST00000597995 RIPK3Q9Y572 518 aa14.95□□□□□ -0.02
TRIM28-212ENST00000597995 IGKV6D-41A0A0C4DH26 115 aa14.94□□□□□ -0.02
TRIM28-212ENST00000597995 DCDC2CA8MYV0 355 aa14.94□□□□□ -0.02
TRIM28-212ENST00000597995 MINDY4BA8MYZ0 360 aa14.94□□□□□ -0.02
TRIM28-212ENST00000597995 ZFYP08048 801 aaPredicted RBP14.94□□□□□ -0.02
TRIM28-212ENST00000597995 GNAT2P19087 354 aa14.94□□□□□ -0.02
TRIM28-212ENST00000597995 FPGSQ05932 587 aa14.94□□□□□ -0.02
TRIM28-212ENST00000597995 FAAP100Q0VG06 881 aa14.94□□□□□ -0.02
TRIM28-212ENST00000597995 TSHZ3Q63HK5 1081 aa14.94□□□□□ -0.02
TRIM28-212ENST00000597995 CCSAPQ6IQ19 270 aaPredicted RBP14.94□□□□□ -0.02
TRIM28-212ENST00000597995 ZNF444Q8N0Y2 327 aaPredicted RBP14.94□□□□□ -0.02
TRIM28-212ENST00000597995 MAFAQ8NHW3 353 aaPredicted RBP14.94□□□□□ -0.02
TRIM28-212ENST00000597995 OSBP2Q969R2 916 aa14.94□□□□□ -0.02
TRIM28-212ENST00000597995 CLIP2Q9UDT6 1046 aa14.94□□□□□ -0.02
TRIM28-212ENST00000597995 FBXO40Q9UH90 709 aa14.94□□□□□ -0.02
TRIM28-212ENST00000597995 SYNRGQ9UMZ2 1314 aa14.93□□□□□ -0.02
TRIM28-212ENST00000597995 FDX1P10109 184 aa14.93□□□□□ -0.02
TRIM28-212ENST00000597995 CST5P28325 142 aaPredicted RBP14.93□□□□□ -0.02
TRIM28-212ENST00000597995 OAZ1P54368 228 aa14.93□□□□□ -0.02
TRIM28-212ENST00000597995 EPHB4P54760 987 aa14.93□□□□□ -0.02
TRIM28-212ENST00000597995 ACVR2BQ13705 512 aa14.93□□□□□ -0.02
TRIM28-212ENST00000597995 KCNA10Q16322 511 aa14.93□□□□□ -0.02
TRIM28-212ENST00000597995 CPXCR1Q8N123 301 aa14.93□□□□□ -0.02
TRIM28-212ENST00000597995 CHST13Q8NET6 341 aa14.93□□□□□ -0.02
TRIM28-212ENST00000597995 LENG1Q96BZ8 264 aaPredicted RBP14.93□□□□□ -0.02
TRIM28-212ENST00000597995 GPATCH3Q96I76 525 aa14.93□□□□□ -0.02
TRIM28-212ENST00000597995 ABHD16BQ9H3Z7 469 aa14.93□□□□□ -0.02
TRIM28-212ENST00000597995 SLC38A10Q9HBR0 1119 aa14.93□□□□□ -0.02
TRIM28-212ENST00000597995 FEM1BQ9UK73 627 aa14.93□□□□□ -0.02
TRIM28-212ENST00000597995 CTDP1Q9Y5B0 961 aaPredicted RBP14.93□□□□□ -0.02
TRIM28-212ENST00000597995 ELP1O95163 1332 aa14.92□□□□□ -0.02
TRIM28-212ENST00000597995 MROH7Q68CQ1 1323 aa14.92□□□□□ -0.02
TRIM28-212ENST00000597995 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.92□□□□□ -0.02
TRIM28-212ENST00000597995 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.92□□□□□ -0.02
TRIM28-212ENST00000597995 RNF113AO15541 343 aaKnown RBP14.92□□□□□ -0.02
TRIM28-212ENST00000597995 TIMP1P01033 207 aa14.92□□□□□ -0.02
TRIM28-212ENST00000597995 PCSK9Q8NBP7 692 aaKnown RBP14.92□□□□□ -0.02
TRIM28-212ENST00000597995 OTUD7AQ8TE49 926 aaPredicted RBP14.92□□□□□ -0.02
TRIM28-212ENST00000597995 MYLIPQ8WY64 445 aa14.92□□□□□ -0.02
TRIM28-212ENST00000597995 GLT1D1Q96MS3 346 aa14.92□□□□□ -0.02
TRIM28-212ENST00000597995 SPC25Q9HBM1 224 aa14.92□□□□□ -0.02
TRIM28-212ENST00000597995 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.92□□□□□ -0.02
TRIM28-212ENST00000597995 MTMR4Q9NYA4 1195 aa14.92□□□□□ -0.02
TRIM28-212ENST00000597995 ZHX1Q9UKY1 873 aaPredicted RBP14.92□□□□□ -0.02
TRIM28-212ENST00000597995 EYSQ5T1H1 3165 aa14.91□□□□□ -0.02
TRIM28-212ENST00000597995 GPAA1O43292 621 aa14.91□□□□□ -0.02
TRIM28-212ENST00000597995 TTLL1O95922 423 aa14.91□□□□□ -0.02
TRIM28-212ENST00000597995 TDO2P48775 406 aa14.91□□□□□ -0.02
TRIM28-212ENST00000597995 CDK7P50613 346 aa14.91□□□□□ -0.02
TRIM28-212ENST00000597995 LRRFIP1Q32MZ4 808 aaKnown RBP14.91□□□□□ -0.02
TRIM28-212ENST00000597995 STK11IPQ8N1F8 1099 aa14.91□□□□□ -0.02
TRIM28-212ENST00000597995 ANKRD35Q8N283 1001 aa14.91□□□□□ -0.02
TRIM28-212ENST00000597995 GMCL1P1Q8NEA9 526 aa14.91□□□□□ -0.02
TRIM28-212ENST00000597995 KIFC2Q96AC6 838 aa14.91□□□□□ -0.02
TRIM28-212ENST00000597995 CEP95Q96GE4 821 aa14.91□□□□□ -0.02
TRIM28-212ENST00000597995 UPF3AQ9H1J1 476 aaKnown RBP14.91□□□□□ -0.02
TRIM28-212ENST00000597995 RAVER2Q9HCJ3 691 aaKnown RBP14.91□□□□□ -0.02
TRIM28-212ENST00000597995 EPB41L4AQ9HCS5 686 aaPredicted RBP14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms