RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 SUPT16HQ9Y5B9 1047 aaKnown RBP19.77■□□□□ 0.76
SHKBP1-215ENST00000597649 SLC4A4Q9Y6R1 1079 aa19.77■□□□□ 0.76
SHKBP1-215ENST00000597649 ROBO3Q96MS0 1386 aa19.77■□□□□ 0.76
SHKBP1-215ENST00000597649 SYNRGQ9UMZ2 1314 aa19.76■□□□□ 0.75
SHKBP1-215ENST00000597649 TMEM265A0A087WTH1 108 aa19.76■□□□□ 0.75
SHKBP1-215ENST00000597649 MYADML2A6NDP7 307 aa19.76■□□□□ 0.75
SHKBP1-215ENST00000597649 RAD21O60216 631 aa19.76■□□□□ 0.75
SHKBP1-215ENST00000597649 UBE3CQ15386 1083 aa19.76■□□□□ 0.75
SHKBP1-215ENST00000597649 C16orf59Q7L2K0 433 aa19.76■□□□□ 0.75
SHKBP1-215ENST00000597649 RPAP2Q8IXW5 612 aaPredicted RBP19.76■□□□□ 0.75
SHKBP1-215ENST00000597649 GOPCQ9HD26 462 aa19.76■□□□□ 0.75
SHKBP1-215ENST00000597649 CNPY2Q9Y2B0 182 aa19.76■□□□□ 0.75
SHKBP1-215ENST00000597649 CHD7Q9P2D1 2997 aa19.75■□□□□ 0.75
SHKBP1-215ENST00000597649 DNAJC25-GNG10A0A024R161 153 aa19.75■□□□□ 0.75
SHKBP1-215ENST00000597649 PRDM6Q9NQX0 595 aa19.75■□□□□ 0.75
SHKBP1-215ENST00000597649 STARD7Q9NQZ5 370 aa19.75■□□□□ 0.75
SHKBP1-215ENST00000597649 ZBTB40Q9NUA8 1239 aa19.75■□□□□ 0.75
SHKBP1-215ENST00000597649 FAM184BQ9ULE4 1060 aa19.75■□□□□ 0.75
SHKBP1-215ENST00000597649 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.74■□□□□ 0.75
SHKBP1-215ENST00000597649 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.74■□□□□ 0.75
SHKBP1-215ENST00000597649 DCDC2CA8MYV0 355 aa19.74■□□□□ 0.75
SHKBP1-215ENST00000597649 ADCY6O43306 1168 aa19.74■□□□□ 0.75
SHKBP1-215ENST00000597649 RAB11FIP3O75154 756 aa19.74■□□□□ 0.75
SHKBP1-215ENST00000597649 TIMP1P01033 207 aa19.74■□□□□ 0.75
SHKBP1-215ENST00000597649 DNAJB2P25686 324 aa19.74■□□□□ 0.75
SHKBP1-215ENST00000597649 COPB2P35606 906 aa19.74■□□□□ 0.75
SHKBP1-215ENST00000597649 CDK7P50613 346 aa19.74■□□□□ 0.75
SHKBP1-215ENST00000597649 SNRNP48Q6IEG0 339 aaKnown RBP19.74■□□□□ 0.75
SHKBP1-215ENST00000597649 MAMDC4Q6UXC1 1216 aa19.74■□□□□ 0.75
SHKBP1-215ENST00000597649 MSL3Q8N5Y2 521 aaKnown RBP19.74■□□□□ 0.75
SHKBP1-215ENST00000597649 SLF1Q9BQI6 1058 aa19.74■□□□□ 0.75
SHKBP1-215ENST00000597649 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.74■□□□□ 0.75
SHKBP1-215ENST00000597649 TEX13BQ9BXU2 312 aa19.74■□□□□ 0.75
SHKBP1-215ENST00000597649 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.74■□□□□ 0.75
SHKBP1-215ENST00000597649 TBX21Q9UL17 535 aa19.74■□□□□ 0.75
SHKBP1-215ENST00000597649 SYNGAP1Q96PV0 1343 aa19.74■□□□□ 0.75
SHKBP1-215ENST00000597649 MOXD2PA6NHM9 499 aa19.73■□□□□ 0.75
SHKBP1-215ENST00000597649 F5H6K3 240 aa19.73■□□□□ 0.75
SHKBP1-215ENST00000597649 RASA1P20936 1047 aa19.73■□□□□ 0.75
SHKBP1-215ENST00000597649 KLRC3Q07444 240 aa19.73■□□□□ 0.75
SHKBP1-215ENST00000597649 AMOTL1Q8IY63 956 aa19.73■□□□□ 0.75
SHKBP1-215ENST00000597649 STK11IPQ8N1F8 1099 aa19.73■□□□□ 0.75
SHKBP1-215ENST00000597649 NUP133Q8WUM0 1156 aa19.73■□□□□ 0.75
SHKBP1-215ENST00000597649 FGD4Q96M96 766 aa19.73■□□□□ 0.75
SHKBP1-215ENST00000597649 ZNF576Q9H609 170 aa19.73■□□□□ 0.75
SHKBP1-215ENST00000597649 ZHX1Q9UKY1 873 aaPredicted RBP19.73■□□□□ 0.75
SHKBP1-215ENST00000597649 PLXNA1Q9UIW2 1896 aa19.73■□□□□ 0.75
SHKBP1-215ENST00000597649 DUSP11O75319 330 aaKnown RBP19.72■□□□□ 0.75
SHKBP1-215ENST00000597649 NDUFB10O96000 172 aa19.72■□□□□ 0.75
SHKBP1-215ENST00000597649 DDX11Q96FC9 970 aa19.72■□□□□ 0.75
SHKBP1-215ENST00000597649 STRBPQ96SI9 672 aaKnown RBP19.72■□□□□ 0.75
SHKBP1-215ENST00000597649 COG6Q9Y2V7 657 aa19.72■□□□□ 0.75
SHKBP1-215ENST00000597649 MYH8P13535 1937 aa19.72■□□□□ 0.75
SHKBP1-215ENST00000597649 BDP1A6H8Y1 2624 aa19.72■□□□□ 0.75
SHKBP1-215ENST00000597649 MYO9BQ13459 2157 aa19.71■□□□□ 0.75
SHKBP1-215ENST00000597649 GSG1L2A8MUP6 293 aa19.71■□□□□ 0.75
SHKBP1-215ENST00000597649 GRXCR1A8MXD5 290 aa19.71■□□□□ 0.75
SHKBP1-215ENST00000597649 HMMRO75330 724 aa19.71■□□□□ 0.75
SHKBP1-215ENST00000597649 PBX2P40425 430 aa19.71■□□□□ 0.75
SHKBP1-215ENST00000597649 SLC4A3P48751 1232 aa19.71■□□□□ 0.75
SHKBP1-215ENST00000597649 ACVR2BQ13705 512 aa19.71■□□□□ 0.75
SHKBP1-215ENST00000597649 TMEM240Q5SV17 173 aa19.71■□□□□ 0.75
SHKBP1-215ENST00000597649 MFSD5Q6N075 450 aa19.71■□□□□ 0.75
SHKBP1-215ENST00000597649 CPXCR1Q8N123 301 aa19.71■□□□□ 0.75
SHKBP1-215ENST00000597649 PRPF38AQ8NAV1 312 aaKnown RBP19.71■□□□□ 0.75
SHKBP1-215ENST00000597649 TIFAQ96CG3 184 aa19.71■□□□□ 0.75
SHKBP1-215ENST00000597649 DDRGK1Q96HY6 314 aa19.71■□□□□ 0.75
SHKBP1-215ENST00000597649 NYAP2Q9P242 653 aa19.71■□□□□ 0.75
SHKBP1-215ENST00000597649 IGKV6D-41A0A0C4DH26 115 aa19.7■□□□□ 0.74
SHKBP1-215ENST00000597649 ATP2A1O14983 1001 aa19.7■□□□□ 0.74
SHKBP1-215ENST00000597649 CST5P28325 142 aaPredicted RBP19.7■□□□□ 0.74
SHKBP1-215ENST00000597649 SBK1Q52WX2 424 aa19.7■□□□□ 0.74
SHKBP1-215ENST00000597649 RASIP1Q5U651 963 aa19.7■□□□□ 0.74
SHKBP1-215ENST00000597649 ZNF467Q7Z7K2 595 aaPredicted RBP19.7■□□□□ 0.74
SHKBP1-215ENST00000597649 RAVER2Q9HCJ3 691 aaKnown RBP19.7■□□□□ 0.74
SHKBP1-215ENST00000597649 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.7■□□□□ 0.74
SHKBP1-215ENST00000597649 CLIP2Q9UDT6 1046 aa19.7■□□□□ 0.74
SHKBP1-215ENST00000597649 ELP1O95163 1332 aa19.7■□□□□ 0.74
SHKBP1-215ENST00000597649 CTAGE5O15320 804 aa19.69■□□□□ 0.74
SHKBP1-215ENST00000597649 SMARCA5O60264 1052 aaPredicted RBP19.69■□□□□ 0.74
SHKBP1-215ENST00000597649 ASGR1P07306 291 aa19.69■□□□□ 0.74
SHKBP1-215ENST00000597649 C6orf222P0C671 652 aaPredicted RBP19.69■□□□□ 0.74
SHKBP1-215ENST00000597649 CSF2RAP15509 400 aa19.69■□□□□ 0.74
SHKBP1-215ENST00000597649 GJA9P57773 515 aa19.69■□□□□ 0.74
SHKBP1-215ENST00000597649 CCDC144BQ3MJ40 725 aa19.69■□□□□ 0.74
SHKBP1-215ENST00000597649 C20orf194Q5TEA3 1177 aa19.69■□□□□ 0.74
SHKBP1-215ENST00000597649 SYMPKQ92797 1274 aaKnown RBP19.69■□□□□ 0.74
SHKBP1-215ENST00000597649 GLT1D1Q96MS3 346 aa19.69■□□□□ 0.74
SHKBP1-215ENST00000597649 PBX4Q9BYU1 374 aa19.69■□□□□ 0.74
SHKBP1-215ENST00000597649 UPF3AQ9H1J1 476 aaKnown RBP19.69■□□□□ 0.74
SHKBP1-215ENST00000597649 CHMP4BQ9H444 224 aaKnown RBP19.69■□□□□ 0.74
SHKBP1-215ENST00000597649 ARPP21Q9UBL0 812 aaPredicted RBP19.69■□□□□ 0.74
SHKBP1-215ENST00000597649 NCOR1O75376 2440 aa19.68■□□□□ 0.74
SHKBP1-215ENST00000597649 XIRP2A4UGR9 3374 aa19.68■□□□□ 0.74
SHKBP1-215ENST00000597649 REV3LO60673 3130 aa19.68■□□□□ 0.74
SHKBP1-215ENST00000597649 MINDY4BA8MYZ0 360 aa19.68■□□□□ 0.74
SHKBP1-215ENST00000597649 ZBED4O75132 1171 aa19.68■□□□□ 0.74
SHKBP1-215ENST00000597649 ACRP10323 421 aa19.68■□□□□ 0.74
SHKBP1-215ENST00000597649 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.68■□□□□ 0.74
SHKBP1-215ENST00000597649 OSBP2Q969R2 916 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms