RNA–Protein interactions for RNA: ENST00000594399.1

USE1-204, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 2

Gene USE1, Length 613 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-204ENST00000594399 NTRK3Q16288 839 aa12.59□□□□□ -0.39
USE1-204ENST00000594399 CCL15Q16663 113 aa12.59□□□□□ -0.39
USE1-204ENST00000594399 TREML2Q5T2D2 321 aa12.59□□□□□ -0.39
USE1-204ENST00000594399 TTBK2Q6IQ55 1244 aa12.59□□□□□ -0.39
USE1-204ENST00000594399 FAM160B2Q86V87 743 aa12.59□□□□□ -0.39
USE1-204ENST00000594399 SRBD1Q8N5C6 995 aaKnown RBP12.59□□□□□ -0.39
USE1-204ENST00000594399 MS4A4AQ96JQ5 239 aa12.59□□□□□ -0.39
USE1-204ENST00000594399 FEM1BQ9UK73 627 aa12.59□□□□□ -0.39
USE1-204ENST00000594399 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.59□□□□□ -0.39
USE1-204ENST00000594399 STK36Q9NRP7 1315 aa12.59□□□□□ -0.39
USE1-204ENST00000594399 A0A0G2JMZ2 1700 aa12.58□□□□□ -0.4
USE1-204ENST00000594399 MANSC4A6NHS7 340 aaPredicted RBP12.58□□□□□ -0.4
USE1-204ENST00000594399 USP17L15C9J2P7 530 aa12.58□□□□□ -0.4
USE1-204ENST00000594399 USP17L13C9JLJ4 530 aa12.58□□□□□ -0.4
USE1-204ENST00000594399 USP17L11C9JVI0 530 aa12.58□□□□□ -0.4
USE1-204ENST00000594399 USP17L18D6R9N7 530 aa12.58□□□□□ -0.4
USE1-204ENST00000594399 USP17L22D6RA61 530 aa12.58□□□□□ -0.4
USE1-204ENST00000594399 USP17L17D6RBQ6 530 aa12.58□□□□□ -0.4
USE1-204ENST00000594399 USP17L19D6RCP7 530 aa12.58□□□□□ -0.4
USE1-204ENST00000594399 USP17L20D6RJB6 530 aa12.58□□□□□ -0.4
USE1-204ENST00000594399 FLOT1O75955 427 aa12.58□□□□□ -0.4
USE1-204ENST00000594399 CTDNEP1O95476 244 aa12.58□□□□□ -0.4
USE1-204ENST00000594399 SMARCA1P28370 1054 aa12.58□□□□□ -0.4
USE1-204ENST00000594399 SLC16A2P36021 539 aa12.58□□□□□ -0.4
USE1-204ENST00000594399 LBX1P52954 281 aa12.58□□□□□ -0.4
USE1-204ENST00000594399 USP17L24Q0WX57 530 aa12.58□□□□□ -0.4
USE1-204ENST00000594399 FUT2Q10981 343 aa12.58□□□□□ -0.4
USE1-204ENST00000594399 SYDE2Q5VT97 1194 aa12.58□□□□□ -0.4
USE1-204ENST00000594399 BTNL9Q6UXG8 535 aa12.58□□□□□ -0.4
USE1-204ENST00000594399 REM2Q8IYK8 340 aaPredicted RBP12.58□□□□□ -0.4
USE1-204ENST00000594399 TRIM22Q8IYM9 498 aa12.58□□□□□ -0.4
USE1-204ENST00000594399 CMTR1Q8N1G2 835 aaKnown RBP12.58□□□□□ -0.4
USE1-204ENST00000594399 NSUN7Q8NE18 718 aaKnown RBP12.58□□□□□ -0.4
USE1-204ENST00000594399 CHURC1Q8WUH1 139 aa12.58□□□□□ -0.4
USE1-204ENST00000594399 BRI3BPQ8WY22 251 aa12.58□□□□□ -0.4
USE1-204ENST00000594399 PHKBQ93100 1093 aa12.58□□□□□ -0.4
USE1-204ENST00000594399 INTS4Q96HW7 963 aaKnown RBP12.58□□□□□ -0.4
USE1-204ENST00000594399 SLF1Q9BQI6 1058 aa12.58□□□□□ -0.4
USE1-204ENST00000594399 SLC26A6Q9BXS9 759 aa12.58□□□□□ -0.4
USE1-204ENST00000594399 RNF26Q9BY78 433 aaPredicted RBP12.58□□□□□ -0.4
USE1-204ENST00000594399 UBA5Q9GZZ9 404 aa12.58□□□□□ -0.4
USE1-204ENST00000594399 CPVLQ9H3G5 476 aa12.58□□□□□ -0.4
USE1-204ENST00000594399 DAXXQ9UER7 740 aaPredicted RBP12.58□□□□□ -0.4
USE1-204ENST00000594399 CYTH3O43739 400 aa12.57□□□□□ -0.4
USE1-204ENST00000594399 JAK2O60674 1132 aa12.57□□□□□ -0.4
USE1-204ENST00000594399 FMNL1O95466 1100 aaPredicted RBP12.57□□□□□ -0.4
USE1-204ENST00000594399 HSPA8P11142 646 aaKnown RBP12.57□□□□□ -0.4
USE1-204ENST00000594399 HOXA7P31268 230 aaPredicted RBP12.57□□□□□ -0.4
USE1-204ENST00000594399 IRX3P78415 501 aaPredicted RBP12.57□□□□□ -0.4
USE1-204ENST00000594399 HMGN5P82970 282 aaKnown RBP12.57□□□□□ -0.4
USE1-204ENST00000594399 AKAP17AQ02040 695 aaKnown RBP12.57□□□□□ -0.4
USE1-204ENST00000594399 SSRP1Q08945 709 aaKnown RBP12.57□□□□□ -0.4
USE1-204ENST00000594399 SREBF2Q12772 1141 aa12.57□□□□□ -0.4
USE1-204ENST00000594399 SLC35G1Q2M3R5 365 aa12.57□□□□□ -0.4
USE1-204ENST00000594399 GPAT2Q6NUI2 795 aa12.57□□□□□ -0.4
USE1-204ENST00000594399 SAMD1Q6SPF0 538 aaPredicted RBP12.57□□□□□ -0.4
USE1-204ENST00000594399 CATSPERGQ6ZRH7 1159 aa12.57□□□□□ -0.4
USE1-204ENST00000594399 ANKRD23Q86SG2 305 aa12.57□□□□□ -0.4
USE1-204ENST00000594399 NBPF11Q86T75 865 aa12.57□□□□□ -0.4
USE1-204ENST00000594399 ADGRF4Q8IZF3 695 aa12.57□□□□□ -0.4
USE1-204ENST00000594399 CCDC82Q8N4S0 544 aa12.57□□□□□ -0.4
USE1-204ENST00000594399 SMARCC2Q8TAQ2 1214 aa12.57□□□□□ -0.4
USE1-204ENST00000594399 KIFC2Q96AC6 838 aa12.57□□□□□ -0.4
USE1-204ENST00000594399 RRP36Q96EU6 259 aaKnown RBP12.57□□□□□ -0.4
USE1-204ENST00000594399 RIOX1Q9H6W3 641 aa12.57□□□□□ -0.4
USE1-204ENST00000594399 FBXO28Q9NVF7 368 aa12.57□□□□□ -0.4
USE1-204ENST00000594399 RBM27Q9P2N5 1060 aaKnown RBP12.57□□□□□ -0.4
USE1-204ENST00000594399 PPP1R9AQ9ULJ8 1098 aa12.57□□□□□ -0.4
USE1-204ENST00000594399 PRR12Q9ULL5 1215 aa12.57□□□□□ -0.4
USE1-204ENST00000594399 SMC3Q9UQE7 1217 aa12.57□□□□□ -0.4
USE1-204ENST00000594399 SLC45A1Q9Y2W3 748 aa12.57□□□□□ -0.4
USE1-204ENST00000594399 MYPNQ86TC9 1320 aa12.57□□□□□ -0.4
USE1-204ENST00000594399 TESPA1A2RU30 521 aaPredicted RBP12.56□□□□□ -0.4
USE1-204ENST00000594399 BTBD19C9JJ37 291 aa12.56□□□□□ -0.4
USE1-204ENST00000594399 PRPF3O43395 683 aaKnown RBP12.56□□□□□ -0.4
USE1-204ENST00000594399 DEXIO95424 95 aa12.56□□□□□ -0.4
USE1-204ENST00000594399 OSBPP22059 807 aa12.56□□□□□ -0.4
USE1-204ENST00000594399 PRPF38AQ8NAV1 312 aaKnown RBP12.56□□□□□ -0.4
USE1-204ENST00000594399 JMJD4Q9H9V9 463 aa12.56□□□□□ -0.4
USE1-204ENST00000594399 FOXD4L1Q9NU39 408 aa12.56□□□□□ -0.4
USE1-204ENST00000594399 SEC63Q9UGP8 760 aaKnown RBP12.56□□□□□ -0.4
USE1-204ENST00000594399 PNMA3Q9UL41 463 aa12.56□□□□□ -0.4
USE1-204ENST00000594399 KIF3AQ9Y496 699 aa12.56□□□□□ -0.4
USE1-204ENST00000594399 RLFQ13129 1914 aa12.56□□□□□ -0.4
USE1-204ENST00000594399 MYH6P13533 1939 aa12.55□□□□□ -0.4
USE1-204ENST00000594399 SPDYE16A6NNV3 312 aaPredicted RBP12.55□□□□□ -0.4
USE1-204ENST00000594399 PPFIA3O75145 1194 aa12.55□□□□□ -0.4
USE1-204ENST00000594399 GJB2P29033 226 aa12.55□□□□□ -0.4
USE1-204ENST00000594399 DSG3P32926 999 aa12.55□□□□□ -0.4
USE1-204ENST00000594399 SLC4A3P48751 1232 aa12.55□□□□□ -0.4
USE1-204ENST00000594399 INHBEP58166 350 aa12.55□□□□□ -0.4
USE1-204ENST00000594399 KIF23Q02241 960 aaPredicted RBP12.55□□□□□ -0.4
USE1-204ENST00000594399 COG2Q14746 738 aa12.55□□□□□ -0.4
USE1-204ENST00000594399 CDC37Q16543 378 aaPredicted RBP12.55□□□□□ -0.4
USE1-204ENST00000594399 HOMER1Q86YM7 354 aa12.55□□□□□ -0.4
USE1-204ENST00000594399 FAM184AQ8NB25 1140 aa12.55□□□□□ -0.4
USE1-204ENST00000594399 PIBF1Q8WXW3 757 aa12.55□□□□□ -0.4
USE1-204ENST00000594399 WASF1Q92558 559 aa12.55□□□□□ -0.4
USE1-204ENST00000594399 MTMR8Q96EF0 704 aa12.55□□□□□ -0.4
USE1-204ENST00000594399 DDX11Q96FC9 970 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms