RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 ERCC3P19447 782 aa17.62■□□□□ 0.41
UPF1-202ENST00000594243 PTPREP23469 700 aa17.62■□□□□ 0.41
UPF1-202ENST00000594243 OAZ1P54368 228 aa17.62■□□□□ 0.41
UPF1-202ENST00000594243 STOX1Q6ZVD7 989 aa17.62■□□□□ 0.41
UPF1-202ENST00000594243 NCAPG2Q86XI2 1143 aa17.62■□□□□ 0.41
UPF1-202ENST00000594243 RIOX2Q8IUF8 465 aa17.62■□□□□ 0.41
UPF1-202ENST00000594243 REPS2Q8NFH8 660 aa17.62■□□□□ 0.41
UPF1-202ENST00000594243 SLC38A10Q9HBR0 1119 aa17.62■□□□□ 0.41
UPF1-202ENST00000594243 TAF6LQ9Y6J9 622 aa17.62■□□□□ 0.41
UPF1-202ENST00000594243 RLFQ13129 1914 aa17.62■□□□□ 0.41
UPF1-202ENST00000594243 SLC15A5A6NIM6 579 aa17.61■□□□□ 0.41
UPF1-202ENST00000594243 SNHG28P0DPA3 235 aa17.61■□□□□ 0.41
UPF1-202ENST00000594243 XRCC5P13010 732 aaKnown RBP17.61■□□□□ 0.41
UPF1-202ENST00000594243 ZKSCAN1P17029 563 aaPredicted RBP17.61■□□□□ 0.41
UPF1-202ENST00000594243 SEC23AQ15436 765 aa17.61■□□□□ 0.41
UPF1-202ENST00000594243 MORN1Q5T089 497 aa17.61■□□□□ 0.41
UPF1-202ENST00000594243 GPATCH4Q5T3I0 446 aaKnown RBP17.61■□□□□ 0.41
UPF1-202ENST00000594243 SH3TC2Q8TF17 1288 aa17.61■□□□□ 0.41
UPF1-202ENST00000594243 MTA3Q9BTC8 594 aa17.61■□□□□ 0.41
UPF1-202ENST00000594243 TEX13BQ9BXU2 312 aa17.61■□□□□ 0.41
UPF1-202ENST00000594243 BIN2Q9UBW5 565 aaPredicted RBP17.61■□□□□ 0.41
UPF1-202ENST00000594243 ZNF214Q9UL59 606 aaPredicted RBP17.61■□□□□ 0.41
UPF1-202ENST00000594243 A0A0G2JMZ2 1700 aa17.61■□□□□ 0.41
UPF1-202ENST00000594243 EPB41L2O43491 1005 aaKnown RBP17.6■□□□□ 0.41
UPF1-202ENST00000594243 CYP2B6P20813 491 aa17.6■□□□□ 0.41
UPF1-202ENST00000594243 MCM5P33992 734 aa17.6■□□□□ 0.41
UPF1-202ENST00000594243 RGS2P41220 211 aa17.6■□□□□ 0.41
UPF1-202ENST00000594243 UBXN2AP68543 259 aa17.6■□□□□ 0.41
UPF1-202ENST00000594243 ZNF543Q08ER8 600 aa17.6■□□□□ 0.41
UPF1-202ENST00000594243 MAP2K5Q13163 448 aa17.6■□□□□ 0.41
UPF1-202ENST00000594243 TSGA10IPQ3SY00 556 aa17.6■□□□□ 0.41
UPF1-202ENST00000594243 BTNL9Q6UXG8 535 aa17.6■□□□□ 0.41
UPF1-202ENST00000594243 MB21D2Q8IYB1 491 aaPredicted RBP17.6■□□□□ 0.41
UPF1-202ENST00000594243 TRMT44Q8IYL2 757 aaKnown RBP17.6■□□□□ 0.41
UPF1-202ENST00000594243 CPXCR1Q8N123 301 aa17.6■□□□□ 0.41
UPF1-202ENST00000594243 ZNF333Q96JL9 665 aa17.6■□□□□ 0.41
UPF1-202ENST00000594243 GPCPD1Q9NPB8 672 aa17.6■□□□□ 0.41
UPF1-202ENST00000594243 PRR12Q9ULL5 1215 aa17.6■□□□□ 0.41
UPF1-202ENST00000594243 PARP14Q460N5 1801 aa17.59■□□□□ 0.41
UPF1-202ENST00000594243 FRMPD2Q68DX3 1309 aaPredicted RBP17.59■□□□□ 0.41
UPF1-202ENST00000594243 FCER1AP12319 257 aa17.59■□□□□ 0.41
UPF1-202ENST00000594243 GRB14Q14449 540 aa17.59■□□□□ 0.41
UPF1-202ENST00000594243 KRT32Q14532 448 aa17.59■□□□□ 0.41
UPF1-202ENST00000594243 WTAPQ15007 396 aa17.59■□□□□ 0.41
UPF1-202ENST00000594243 SNRNP48Q6IEG0 339 aaKnown RBP17.59■□□□□ 0.41
UPF1-202ENST00000594243 CHST3Q7LGC8 479 aa17.59■□□□□ 0.41
UPF1-202ENST00000594243 ABRAQ8N0Z2 381 aa17.59■□□□□ 0.41
UPF1-202ENST00000594243 USP6NLQ92738 828 aa17.59■□□□□ 0.41
UPF1-202ENST00000594243 RAVER2Q9HCJ3 691 aaKnown RBP17.59■□□□□ 0.41
UPF1-202ENST00000594243 SLC5A4Q9NY91 659 aa17.59■□□□□ 0.41
UPF1-202ENST00000594243 ASPRV1Q53RT3 343 aa17.58■□□□□ 0.4
UPF1-202ENST00000594243 TMEM67Q5HYA8 995 aa17.58■□□□□ 0.4
UPF1-202ENST00000594243 SYDE2Q5VT97 1194 aa17.58■□□□□ 0.4
UPF1-202ENST00000594243 TTBK2Q6IQ55 1244 aa17.58■□□□□ 0.4
UPF1-202ENST00000594243 RASGRP2Q7LDG7 609 aa17.58■□□□□ 0.4
UPF1-202ENST00000594243 DPP9Q86TI2 863 aa17.58■□□□□ 0.4
UPF1-202ENST00000594243 TMTC2Q8N394 836 aa17.58■□□□□ 0.4
UPF1-202ENST00000594243 IGDCC4Q8TDY8 1250 aa17.58■□□□□ 0.4
UPF1-202ENST00000594243 TMEM87BQ96K49 555 aa17.58■□□□□ 0.4
UPF1-202ENST00000594243 NEK1Q96PY6 1258 aa17.58■□□□□ 0.4
UPF1-202ENST00000594243 TMEM106CQ9BVX2 250 aa17.58■□□□□ 0.4
UPF1-202ENST00000594243 PRC1O43663 620 aa17.57■□□□□ 0.4
UPF1-202ENST00000594243 HOXC6P09630 235 aa17.57■□□□□ 0.4
UPF1-202ENST00000594243 PARP1P09874 1014 aaKnown RBP17.57■□□□□ 0.4
UPF1-202ENST00000594243 ELNP15502 786 aa17.57■□□□□ 0.4
UPF1-202ENST00000594243 SLC16A2P36021 539 aa17.57■□□□□ 0.4
UPF1-202ENST00000594243 SLC4A3P48751 1232 aa17.57■□□□□ 0.4
UPF1-202ENST00000594243 ANTXR2P58335 489 aa17.57■□□□□ 0.4
UPF1-202ENST00000594243 KCTD2Q14681 263 aa17.57■□□□□ 0.4
UPF1-202ENST00000594243 MMP19Q99542 508 aa17.57■□□□□ 0.4
UPF1-202ENST00000594243 APBA2Q99767 749 aa17.57■□□□□ 0.4
UPF1-202ENST00000594243 FBXO40Q9UH90 709 aa17.57■□□□□ 0.4
UPF1-202ENST00000594243 EIF5BO60841 1220 aaKnown RBP17.56■□□□□ 0.4
UPF1-202ENST00000594243 HMGCRP04035 888 aa17.56■□□□□ 0.4
UPF1-202ENST00000594243 HMGB1P09429 215 aaKnown RBP17.56■□□□□ 0.4
UPF1-202ENST00000594243 ADORA2AP29274 412 aa17.56■□□□□ 0.4
UPF1-202ENST00000594243 HSPA4P34932 840 aa17.56■□□□□ 0.4
UPF1-202ENST00000594243 CATIPQ7Z7H3 387 aa17.56■□□□□ 0.4
UPF1-202ENST00000594243 CHST13Q8NET6 341 aa17.56■□□□□ 0.4
UPF1-202ENST00000594243 RANBP17Q9H2T7 1088 aaKnown RBP17.56■□□□□ 0.4
UPF1-202ENST00000594243 PNMA2Q9UL42 364 aa17.56■□□□□ 0.4
UPF1-202ENST00000594243 RIPK3Q9Y572 518 aa17.56■□□□□ 0.4
UPF1-202ENST00000594243 INHAP05111 366 aa17.55■□□□□ 0.4
UPF1-202ENST00000594243 GOLGA8HP0CJ92 632 aa17.55■□□□□ 0.4
UPF1-202ENST00000594243 TKFCQ3LXA3 575 aa17.55■□□□□ 0.4
UPF1-202ENST00000594243 CCDC174Q6PII3 467 aa17.55■□□□□ 0.4
UPF1-202ENST00000594243 RASEFQ8IZ41 740 aa17.55■□□□□ 0.4
UPF1-202ENST00000594243 KCNB2Q92953 911 aa17.55■□□□□ 0.4
UPF1-202ENST00000594243 COL11A1P12107 1806 aaPredicted RBP17.54■□□□□ 0.4
UPF1-202ENST00000594243 ZNF536O15090 1300 aa17.54■□□□□ 0.4
UPF1-202ENST00000594243 CCDC69A6NI79 296 aa17.54■□□□□ 0.4
UPF1-202ENST00000594243 MYCP01106 439 aaPredicted RBP17.54■□□□□ 0.4
UPF1-202ENST00000594243 ICAM1P05362 532 aa17.54■□□□□ 0.4
UPF1-202ENST00000594243 LIFRP42702 1097 aa17.54■□□□□ 0.4
UPF1-202ENST00000594243 MLLT1Q03111 559 aaPredicted RBP17.54■□□□□ 0.4
UPF1-202ENST00000594243 DHX32Q7L7V1 743 aaKnown RBP17.54■□□□□ 0.4
UPF1-202ENST00000594243 TRIB2Q92519 343 aa17.54■□□□□ 0.4
UPF1-202ENST00000594243 DDX11Q96FC9 970 aa17.54■□□□□ 0.4
UPF1-202ENST00000594243 AGBL1Q96MI9 1066 aa17.54■□□□□ 0.4
UPF1-202ENST00000594243 USP26Q9BXU7 913 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms