RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 SLC9C1Q4G0N8 1177 aa10.27□□□□□ -0.77
SMAD4-209ENST00000589941 PDE12Q6L8Q7 609 aaKnown RBP10.27□□□□□ -0.77
SMAD4-209ENST00000589941 LINC00114Q6XXX2 140 aa10.27□□□□□ -0.77
SMAD4-209ENST00000589941 ZNF438Q7Z4V0 828 aa10.27□□□□□ -0.77
SMAD4-209ENST00000589941 GJD3Q8N144 294 aa10.27□□□□□ -0.77
SMAD4-209ENST00000589941 DEFB123Q8N688 67 aa10.27□□□□□ -0.77
SMAD4-209ENST00000589941 SH3TC2Q8TF17 1288 aa10.27□□□□□ -0.77
SMAD4-209ENST00000589941 ERO1AQ96HE7 468 aa10.27□□□□□ -0.77
SMAD4-209ENST00000589941 POLR3GLQ9BT43 218 aa10.27□□□□□ -0.77
SMAD4-209ENST00000589941 CNTN3Q9P232 1028 aa10.27□□□□□ -0.77
SMAD4-209ENST00000589941 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.27□□□□□ -0.77
SMAD4-209ENST00000589941 MGAMO43451 1857 aa10.26□□□□□ -0.77
SMAD4-209ENST00000589941 RPLP1P05386 114 aaKnown RBP10.26□□□□□ -0.77
SMAD4-209ENST00000589941 PSAPP07602 524 aa10.26□□□□□ -0.77
SMAD4-209ENST00000589941 SNRPA1P09661 255 aaKnown RBP10.26□□□□□ -0.77
SMAD4-209ENST00000589941 CPB1P15086 417 aa10.26□□□□□ -0.77
SMAD4-209ENST00000589941 NRLP54845 237 aa10.26□□□□□ -0.77
SMAD4-209ENST00000589941 ZNF280AP59817 542 aaPredicted RBP10.26□□□□□ -0.77
SMAD4-209ENST00000589941 XKR5Q6UX68 686 aa10.26□□□□□ -0.77
SMAD4-209ENST00000589941 C20orf204Q6ZNR8 217 aa10.26□□□□□ -0.77
SMAD4-209ENST00000589941 UBE2Q1Q7Z7E8 422 aa10.26□□□□□ -0.77
SMAD4-209ENST00000589941 MORC1Q86VD1 984 aa10.26□□□□□ -0.77
SMAD4-209ENST00000589941 ZNF34Q8IZ26 560 aa10.26□□□□□ -0.77
SMAD4-209ENST00000589941 MICALL1Q8N3F8 863 aa10.26□□□□□ -0.77
SMAD4-209ENST00000589941 OR13H1Q8NG92 308 aa10.26□□□□□ -0.77
SMAD4-209ENST00000589941 NSUN5Q96P11 429 aaKnown RBP10.26□□□□□ -0.77
SMAD4-209ENST00000589941 ABI2Q9NYB9 513 aaPredicted RBP10.26□□□□□ -0.77
SMAD4-209ENST00000589941 STXBP5LQ9Y2K9 1186 aa10.26□□□□□ -0.77
SMAD4-209ENST00000589941 TTC28Q96AY4 2481 aa10.26□□□□□ -0.77
SMAD4-209ENST00000589941 J3QW42 95 aa10.25□□□□□ -0.77
SMAD4-209ENST00000589941 M0R082 166 aa10.25□□□□□ -0.77
SMAD4-209ENST00000589941 PLAURQ03405 335 aa10.25□□□□□ -0.77
SMAD4-209ENST00000589941 FAM35AQ86V20 835 aa10.25□□□□□ -0.77
SMAD4-209ENST00000589941 ZNF417Q8TAU3 575 aa10.25□□□□□ -0.77
SMAD4-209ENST00000589941 NUDT8Q8WV74 236 aa10.25□□□□□ -0.77
SMAD4-209ENST00000589941 CLMNQ96JQ2 1002 aa10.25□□□□□ -0.77
SMAD4-209ENST00000589941 ZNF587Q96SQ5 575 aaPredicted RBP10.25□□□□□ -0.77
SMAD4-209ENST00000589941 POLLQ9UGP5 575 aa10.25□□□□□ -0.77
SMAD4-209ENST00000589941 BRPF3Q9ULD4 1205 aa10.25□□□□□ -0.77
SMAD4-209ENST00000589941 ERVV-1B6SEH8 477 aa10.24□□□□□ -0.77
SMAD4-209ENST00000589941 VIL1P09327 827 aaKnown RBP10.24□□□□□ -0.77
SMAD4-209ENST00000589941 HCLS1P14317 486 aaPredicted RBP10.24□□□□□ -0.77
SMAD4-209ENST00000589941 SOX18P35713 384 aa10.24□□□□□ -0.77
SMAD4-209ENST00000589941 NBPF9Q3BBW0 867 aa10.24□□□□□ -0.77
SMAD4-209ENST00000589941 TTC39BQ5VTQ0 682 aaPredicted RBP10.24□□□□□ -0.77
SMAD4-209ENST00000589941 PSAPL1Q6NUJ1 521 aa10.24□□□□□ -0.77
SMAD4-209ENST00000589941 KANK3Q6NY19 840 aa10.24□□□□□ -0.77
SMAD4-209ENST00000589941 C1orf127Q8N9H9 656 aa10.24□□□□□ -0.77
SMAD4-209ENST00000589941 ZNF428Q96B54 188 aa10.24□□□□□ -0.77
SMAD4-209ENST00000589941 TMX4Q9H1E5 349 aaPredicted RBP10.24□□□□□ -0.77
SMAD4-209ENST00000589941 MTMR10Q9NXD2 777 aa10.24□□□□□ -0.77
SMAD4-209ENST00000589941 BIN2Q9UBW5 565 aaPredicted RBP10.24□□□□□ -0.77
SMAD4-209ENST00000589941 A0A1W2PPC1 479 aa10.23□□□□□ -0.77
SMAD4-209ENST00000589941 HOXD8P13378 290 aaPredicted RBP10.23□□□□□ -0.77
SMAD4-209ENST00000589941 GPSM2P81274 684 aa10.23□□□□□ -0.77
SMAD4-209ENST00000589941 GRAPQ13588 217 aa10.23□□□□□ -0.77
SMAD4-209ENST00000589941 COL9A3Q14050 684 aaPredicted RBP10.23□□□□□ -0.77
SMAD4-209ENST00000589941 PERM1Q5SV97 790 aa10.23□□□□□ -0.77
SMAD4-209ENST00000589941 GRAPLQ8TC17 118 aaPredicted RBP10.23□□□□□ -0.77
SMAD4-209ENST00000589941 SCARF2Q96GP6 870 aaPredicted RBP10.23□□□□□ -0.77
SMAD4-209ENST00000589941 ARHGAP39Q9C0H5 1083 aa10.23□□□□□ -0.77
SMAD4-209ENST00000589941 CHRDQ9H2X0 955 aa10.23□□□□□ -0.77
SMAD4-209ENST00000589941 MYOZ2Q9NPC6 264 aa10.23□□□□□ -0.77
SMAD4-209ENST00000589941 STAP2Q9UGK3 403 aa10.23□□□□□ -0.77
SMAD4-209ENST00000589941 FOXD3Q9UJU5 478 aaPredicted RBP10.23□□□□□ -0.77
SMAD4-209ENST00000589941 CDH23Q9H251 3354 aa10.23□□□□□ -0.77
SMAD4-209ENST00000589941 BBOX1O75936 387 aa10.22□□□□□ -0.77
SMAD4-209ENST00000589941 USP5P45974 858 aa10.22□□□□□ -0.77
SMAD4-209ENST00000589941 GSK3AP49840 483 aa10.22□□□□□ -0.77
SMAD4-209ENST00000589941 SP3Q02447 781 aa10.22□□□□□ -0.77
SMAD4-209ENST00000589941 TCIRG1Q13488 830 aa10.22□□□□□ -0.77
SMAD4-209ENST00000589941 LDLRAD1Q5T700 205 aa10.22□□□□□ -0.77
SMAD4-209ENST00000589941 BEND7Q8N7W2 519 aaPredicted RBP10.22□□□□□ -0.77
SMAD4-209ENST00000589941 TTC16Q8NEE8 873 aa10.22□□□□□ -0.77
SMAD4-209ENST00000589941 WNK4Q96J92 1243 aa10.22□□□□□ -0.77
SMAD4-209ENST00000589941 GMLQ99445 158 aa10.22□□□□□ -0.77
SMAD4-209ENST00000589941 PTPN18Q99952 460 aa10.22□□□□□ -0.77
SMAD4-209ENST00000589941 LPIN3Q9BQK8 851 aa10.22□□□□□ -0.77
SMAD4-209ENST00000589941 SUV39H2Q9H5I1 410 aa10.22□□□□□ -0.77
SMAD4-209ENST00000589941 PANK3Q9H999 370 aa10.22□□□□□ -0.77
SMAD4-209ENST00000589941 KANSL3Q9P2N6 904 aa10.22□□□□□ -0.77
SMAD4-209ENST00000589941 MKL2Q9ULH7 1088 aa10.22□□□□□ -0.77
SMAD4-209ENST00000589941 MANSC4A6NHS7 340 aaPredicted RBP10.21□□□□□ -0.77
SMAD4-209ENST00000589941 NDUFB5O43674 189 aa10.21□□□□□ -0.77
SMAD4-209ENST00000589941 SASH1O94885 1247 aa10.21□□□□□ -0.77
SMAD4-209ENST00000589941 MYL6BP14649 208 aa10.21□□□□□ -0.77
SMAD4-209ENST00000589941 PCSK7Q16549 785 aa10.21□□□□□ -0.77
SMAD4-209ENST00000589941 SLC10A5Q5PT55 438 aa10.21□□□□□ -0.77
SMAD4-209ENST00000589941 KIF6Q6ZMV9 814 aa10.21□□□□□ -0.77
SMAD4-209ENST00000589941 MCM10Q7L590 875 aa10.21□□□□□ -0.77
SMAD4-209ENST00000589941 PODNQ7Z5L7 613 aa10.21□□□□□ -0.77
SMAD4-209ENST00000589941 CELF1Q92879 486 aaKnown RBP10.21□□□□□ -0.77
SMAD4-209ENST00000589941 PHACTR3Q96KR7 559 aa10.21□□□□□ -0.77
SMAD4-209ENST00000589941 ANGEL1Q9UNK9 670 aaKnown RBP10.21□□□□□ -0.77
SMAD4-209ENST00000589941 DDX60LQ5H9U9 1706 aaKnown RBP10.21□□□□□ -0.78
SMAD4-209ENST00000589941 ARAP2Q8WZ64 1704 aa10.21□□□□□ -0.78
SMAD4-209ENST00000589941 TNFRSF21O75509 655 aa10.2□□□□□ -0.78
SMAD4-209ENST00000589941 EIF2AK2P19525 551 aaKnown RBP10.2□□□□□ -0.78
SMAD4-209ENST00000589941 IRS1P35568 1242 aa10.2□□□□□ -0.78
SMAD4-209ENST00000589941 EHHADHQ08426 723 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms