RNA–Protein interactions for RNA: ENST00000589216.1

PTPN2-208, Transcript of protein tyrosine phosphatase, non-receptor type 2, human

TSL 3

Gene PTPN2, Length 646 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN2-208	ENST00000589216	RGS2	P41220	211 aa		11.65	□□□□□ -0.54
PTPN2-208	ENST00000589216	SLC1A4	P43007	532 aa		11.65	□□□□□ -0.54
PTPN2-208	ENST00000589216	SNAP25	P60880	206 aa		11.65	□□□□□ -0.54
PTPN2-208	ENST00000589216	UBXN2A	P68543	259 aa		11.65	□□□□□ -0.54
PTPN2-208	ENST00000589216	COL9A3	Q14050	684 aa	Predicted RBP	11.65	□□□□□ -0.54
PTPN2-208	ENST00000589216	IMMT	Q16891	758 aa	Known RBP	11.65	□□□□□ -0.54
PTPN2-208	ENST00000589216	BMP2KL	Q5H9B9	411 aa		11.65	□□□□□ -0.54
PTPN2-208	ENST00000589216	MAP3K21	Q5TCX8	1036 aa		11.65	□□□□□ -0.54
PTPN2-208	ENST00000589216	STOX1	Q6ZVD7	989 aa		11.65	□□□□□ -0.54
PTPN2-208	ENST00000589216	NCAPG2	Q86XI2	1143 aa		11.65	□□□□□ -0.54
PTPN2-208	ENST00000589216	TMEM106C	Q9BVX2	250 aa		11.65	□□□□□ -0.54
PTPN2-208	ENST00000589216	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	11.65	□□□□□ -0.54
PTPN2-208	ENST00000589216	RNF41	Q9H4P4	317 aa	Predicted RBP	11.65	□□□□□ -0.54
PTPN2-208	ENST00000589216	PAK6	Q9NQU5	681 aa	Predicted RBP	11.65	□□□□□ -0.54
PTPN2-208	ENST00000589216	ISY1	Q9ULR0	285 aa	Known RBP	11.65	□□□□□ -0.54
PTPN2-208	ENST00000589216	RIPK3	Q9Y572	518 aa		11.65	□□□□□ -0.54
PTPN2-208	ENST00000589216	FRMPD2	Q68DX3	1309 aa	Predicted RBP	11.64	□□□□□ -0.55
PTPN2-208	ENST00000589216	COBL	O75128	1261 aa		11.64	□□□□□ -0.55
PTPN2-208	ENST00000589216	IGHA2	P01877	340 aa		11.64	□□□□□ -0.55
PTPN2-208	ENST00000589216	GJB1	P08034	283 aa		11.64	□□□□□ -0.55
PTPN2-208	ENST00000589216	HOXC6	P09630	235 aa		11.64	□□□□□ -0.55
PTPN2-208	ENST00000589216	TOP1	P11387	765 aa	Known RBP	11.64	□□□□□ -0.55
PTPN2-208	ENST00000589216	PC	P11498	1178 aa	Known RBP	11.64	□□□□□ -0.55
PTPN2-208	ENST00000589216	STAT2	P52630	851 aa		11.64	□□□□□ -0.55
PTPN2-208	ENST00000589216	CCDC96	Q2M329	555 aa		11.64	□□□□□ -0.55
PTPN2-208	ENST00000589216	SNRNP48	Q6IEG0	339 aa	Known RBP	11.64	□□□□□ -0.55
PTPN2-208	ENST00000589216	TTBK2	Q6IQ55	1244 aa		11.64	□□□□□ -0.55
PTPN2-208	ENST00000589216	RIOX2	Q8IUF8	465 aa		11.64	□□□□□ -0.55
PTPN2-208	ENST00000589216	PRPF38A	Q8NAV1	312 aa	Known RBP	11.64	□□□□□ -0.55
PTPN2-208	ENST00000589216	U2AF1L4	Q8WU68	220 aa	Known RBP	11.64	□□□□□ -0.55
PTPN2-208	ENST00000589216	RUFY2	Q8WXA3	655 aa		11.64	□□□□□ -0.55
PTPN2-208	ENST00000589216	ESR2	Q92731	530 aa		11.64	□□□□□ -0.55
PTPN2-208	ENST00000589216	DEFB118	Q96PH6	123 aa		11.64	□□□□□ -0.55
PTPN2-208	ENST00000589216	SLC38A10	Q9HBR0	1119 aa		11.64	□□□□□ -0.55
PTPN2-208	ENST00000589216	RAVER2	Q9HCJ3	691 aa	Known RBP	11.64	□□□□□ -0.55
PTPN2-208	ENST00000589216	TCP11L1	Q9NUJ3	509 aa		11.64	□□□□□ -0.55
PTPN2-208	ENST00000589216	FEM1B	Q9UK73	627 aa		11.64	□□□□□ -0.55
PTPN2-208	ENST00000589216	IVNS1ABP	Q9Y6Y0	642 aa		11.64	□□□□□ -0.55
PTPN2-208	ENST00000589216	MYH6	P13533	1939 aa		11.64	□□□□□ -0.55
PTPN2-208	ENST00000589216	ZNF536	O15090	1300 aa		11.63	□□□□□ -0.55
PTPN2-208	ENST00000589216	TNKS	O95271	1327 aa		11.63	□□□□□ -0.55
PTPN2-208	ENST00000589216	NEFL	P07196	543 aa		11.63	□□□□□ -0.55
PTPN2-208	ENST00000589216	PGK2	P07205	417 aa		11.63	□□□□□ -0.55
PTPN2-208	ENST00000589216	PDHB	P11177	359 aa		11.63	□□□□□ -0.55
PTPN2-208	ENST00000589216	CCND3	P30281	292 aa	Predicted RBP	11.63	□□□□□ -0.55
PTPN2-208	ENST00000589216	CYP2C19	P33261	490 aa		11.63	□□□□□ -0.55
PTPN2-208	ENST00000589216	SLC16A2	P36021	539 aa		11.63	□□□□□ -0.55
PTPN2-208	ENST00000589216	STAT3	P40763	770 aa		11.63	□□□□□ -0.55
PTPN2-208	ENST00000589216	GJA8	P48165	433 aa		11.63	□□□□□ -0.55
PTPN2-208	ENST00000589216	CACNB2	Q08289	660 aa	Predicted RBP	11.63	□□□□□ -0.55
PTPN2-208	ENST00000589216	CYB5R4	Q7L1T6	521 aa		11.63	□□□□□ -0.55
PTPN2-208	ENST00000589216	CPXCR1	Q8N123	301 aa		11.63	□□□□□ -0.55
PTPN2-208	ENST00000589216	ENAH	Q8N8S7	591 aa	Predicted RBP	11.63	□□□□□ -0.55
PTPN2-208	ENST00000589216	TRPV1	Q8NER1	839 aa		11.63	□□□□□ -0.55
PTPN2-208	ENST00000589216	ESYT1	Q9BSJ8	1104 aa		11.63	□□□□□ -0.55
PTPN2-208	ENST00000589216	TEX13B	Q9BXU2	312 aa		11.63	□□□□□ -0.55
PTPN2-208	ENST00000589216	LSG1	Q9H089	658 aa	Known RBP	11.63	□□□□□ -0.55
PTPN2-208	ENST00000589216	MROH8	Q9H579	483 aa		11.63	□□□□□ -0.55
PTPN2-208	ENST00000589216	CTNNA3	Q9UI47	895 aa		11.63	□□□□□ -0.55
PTPN2-208	ENST00000589216	RBM8A	Q9Y5S9	174 aa	Known RBP	11.63	□□□□□ -0.55
PTPN2-208	ENST00000589216	ATP2A1	O14983	1001 aa		11.62	□□□□□ -0.55
PTPN2-208	ENST00000589216	SNHG28	P0DPA3	235 aa		11.62	□□□□□ -0.55
PTPN2-208	ENST00000589216	SLC4A3	P48751	1232 aa		11.62	□□□□□ -0.55
PTPN2-208	ENST00000589216	IK	Q13123	557 aa	Predicted RBP	11.62	□□□□□ -0.55
PTPN2-208	ENST00000589216	PPP4R3B	Q5MIZ7	849 aa		11.62	□□□□□ -0.55
PTPN2-208	ENST00000589216	UBE2Q1	Q7Z7E8	422 aa		11.62	□□□□□ -0.55
PTPN2-208	ENST00000589216	DIS3L	Q8TF46	1054 aa	Known RBP	11.62	□□□□□ -0.55
PTPN2-208	ENST00000589216	DCAF4	Q8WV16	495 aa		11.62	□□□□□ -0.55
PTPN2-208	ENST00000589216	MMP19	Q99542	508 aa		11.62	□□□□□ -0.55
PTPN2-208	ENST00000589216	CPVL	Q9H3G5	476 aa		11.62	□□□□□ -0.55
PTPN2-208	ENST00000589216	GPCPD1	Q9NPB8	672 aa		11.62	□□□□□ -0.55
PTPN2-208	ENST00000589216	HOMER2	Q9NSB8	354 aa		11.62	□□□□□ -0.55
PTPN2-208	ENST00000589216	ZSWIM5	Q9P217	1185 aa		11.62	□□□□□ -0.55
PTPN2-208	ENST00000589216	PRR12	Q9ULL5	1215 aa		11.62	□□□□□ -0.55
PTPN2-208	ENST00000589216	RPTOR	Q8N122	1335 aa		11.61	□□□□□ -0.55
PTPN2-208	ENST00000589216		E7EWF7	191 aa		11.61	□□□□□ -0.55
PTPN2-208	ENST00000589216	SGPL1	O95470	568 aa		11.61	□□□□□ -0.55
PTPN2-208	ENST00000589216	SLC25A27	O95847	323 aa		11.61	□□□□□ -0.55
PTPN2-208	ENST00000589216	GOLGA8H	P0CJ92	632 aa		11.61	□□□□□ -0.55
PTPN2-208	ENST00000589216	CYBA	P13498	195 aa		11.61	□□□□□ -0.55
PTPN2-208	ENST00000589216	ANTXR2	P58335	489 aa		11.61	□□□□□ -0.55
PTPN2-208	ENST00000589216	ZNF543	Q08ER8	600 aa		11.61	□□□□□ -0.55
PTPN2-208	ENST00000589216	CCDC174	Q6PII3	467 aa		11.61	□□□□□ -0.55
PTPN2-208	ENST00000589216	FAM160B2	Q86V87	743 aa		11.61	□□□□□ -0.55
PTPN2-208	ENST00000589216	ABRA	Q8N0Z2	381 aa		11.61	□□□□□ -0.55
PTPN2-208	ENST00000589216	MAP4K1	Q92918	833 aa		11.61	□□□□□ -0.55
PTPN2-208	ENST00000589216	MAML3	Q96JK9	1138 aa		11.61	□□□□□ -0.55
PTPN2-208	ENST00000589216	FGD4	Q96M96	766 aa		11.61	□□□□□ -0.55
PTPN2-208	ENST00000589216	AGBL1	Q96MI9	1066 aa		11.61	□□□□□ -0.55
PTPN2-208	ENST00000589216	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	11.61	□□□□□ -0.55
PTPN2-208	ENST00000589216	CRISPLD2	Q9H0B8	497 aa		11.61	□□□□□ -0.55
PTPN2-208	ENST00000589216	SENP2	Q9HC62	589 aa		11.61	□□□□□ -0.55
PTPN2-208	ENST00000589216	STRN	O43815	780 aa		11.6	□□□□□ -0.55
PTPN2-208	ENST00000589216	PLA2G6	O60733	806 aa		11.6	□□□□□ -0.55
PTPN2-208	ENST00000589216	ZBED4	O75132	1171 aa		11.6	□□□□□ -0.55
PTPN2-208	ENST00000589216	FARP2	O94887	1054 aa	Predicted RBP	11.6	□□□□□ -0.55
PTPN2-208	ENST00000589216	FCER1A	P12319	257 aa		11.6	□□□□□ -0.55
PTPN2-208	ENST00000589216	MNX1	P50219	401 aa	Predicted RBP	11.6	□□□□□ -0.55
PTPN2-208	ENST00000589216	OAZ1	P54368	228 aa		11.6	□□□□□ -0.55
PTPN2-208	ENST00000589216	SEC23A	Q15436	765 aa		11.6	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms