RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 BCAR3O75815 825 aa5.02□□□□□ -1.61
LIG3-211ENST00000588713 PTPRAP18433 802 aa5.02□□□□□ -1.61
LIG3-211ENST00000588713 CYP2C18P33260 490 aa5.02□□□□□ -1.61
LIG3-211ENST00000588713 EIF4A1P60842 406 aaKnown RBP5.02□□□□□ -1.61
LIG3-211ENST00000588713 ZXDAP98168 799 aa5.02□□□□□ -1.61
LIG3-211ENST00000588713 TAP1Q03518 808 aa5.02□□□□□ -1.61
LIG3-211ENST00000588713 TCP10Q12799 353 aa5.02□□□□□ -1.61
LIG3-211ENST00000588713 HDAC1Q13547 482 aaPredicted RBP5.02□□□□□ -1.61
LIG3-211ENST00000588713 MVPQ14764 893 aaKnown RBP5.02□□□□□ -1.61
LIG3-211ENST00000588713 TAF7Q15545 349 aaPredicted RBP5.02□□□□□ -1.61
LIG3-211ENST00000588713 CLUL1Q15846 466 aa5.02□□□□□ -1.61
LIG3-211ENST00000588713 FAM47AQ5JRC9 791 aa5.02□□□□□ -1.61
LIG3-211ENST00000588713 MFSD14BQ5SR56 506 aa5.02□□□□□ -1.61
LIG3-211ENST00000588713 MORN1Q5T089 497 aa5.02□□□□□ -1.61
LIG3-211ENST00000588713 KIAA0319Q5VV43 1072 aa5.02□□□□□ -1.61
LIG3-211ENST00000588713 CLEC17AQ6ZS10 378 aa5.02□□□□□ -1.61
LIG3-211ENST00000588713 PLEKHH3Q7Z736 793 aa5.02□□□□□ -1.61
LIG3-211ENST00000588713 WDR63Q8IWG1 891 aa5.02□□□□□ -1.61
LIG3-211ENST00000588713 SCYL3Q8IZE3 742 aa5.02□□□□□ -1.61
LIG3-211ENST00000588713 ANP32BQ92688 251 aaKnown RBP5.02□□□□□ -1.61
LIG3-211ENST00000588713 USP6NLQ92738 828 aa5.02□□□□□ -1.61
LIG3-211ENST00000588713 EDC3Q96F86 508 aaKnown RBP5.02□□□□□ -1.61
LIG3-211ENST00000588713 PHACTR3Q96KR7 559 aa5.02□□□□□ -1.61
LIG3-211ENST00000588713 CDC5LQ99459 802 aaKnown RBP5.02□□□□□ -1.61
LIG3-211ENST00000588713 ASCC2Q9H1I8 757 aaPredicted RBP5.02□□□□□ -1.61
LIG3-211ENST00000588713 ZNF112Q9UJU3 913 aa5.02□□□□□ -1.61
LIG3-211ENST00000588713 SERPINA10Q9UK55 444 aa5.02□□□□□ -1.61
LIG3-211ENST00000588713 TBX21Q9UL17 535 aa5.02□□□□□ -1.61
LIG3-211ENST00000588713 MTUS1Q9ULD2 1270 aa5.02□□□□□ -1.61
LIG3-211ENST00000588713 LEMD3Q9Y2U8 911 aa5.02□□□□□ -1.61
LIG3-211ENST00000588713 COG6Q9Y2V7 657 aa5.02□□□□□ -1.61
LIG3-211ENST00000588713 AFG3L2Q9Y4W6 797 aa5.02□□□□□ -1.61
LIG3-211ENST00000588713 FLNBO75369 2602 aaKnown RBP5.02□□□□□ -1.61
LIG3-211ENST00000588713 GVINP1Q7Z2Y8 2422 aa5.02□□□□□ -1.61
LIG3-211ENST00000588713 VPS13AQ96RL7 3174 aa5.02□□□□□ -1.61
LIG3-211ENST00000588713 CACNA1HO95180 2353 aa5.01□□□□□ -1.61
LIG3-211ENST00000588713 DMDP11532 3685 aa5.01□□□□□ -1.61
LIG3-211ENST00000588713 GOLGA6L22H0YM25 854 aa5.01□□□□□ -1.61
LIG3-211ENST00000588713 SNAP23O00161 211 aa5.01□□□□□ -1.61
LIG3-211ENST00000588713 LCE2BO14633 110 aa5.01□□□□□ -1.61
LIG3-211ENST00000588713 APAF1O14727 1248 aa5.01□□□□□ -1.61
LIG3-211ENST00000588713 PDGFBP01127 241 aaPredicted RBP5.01□□□□□ -1.61
LIG3-211ENST00000588713 ADRB1P08588 477 aa5.01□□□□□ -1.61
LIG3-211ENST00000588713 CYBAP13498 195 aa5.01□□□□□ -1.61
LIG3-211ENST00000588713 MSNP26038 577 aaKnown RBP5.01□□□□□ -1.61
LIG3-211ENST00000588713 MAPK4P31152 587 aa5.01□□□□□ -1.61
LIG3-211ENST00000588713 MCM5P33992 734 aa5.01□□□□□ -1.61
LIG3-211ENST00000588713 RARSP54136 660 aaKnown RBP5.01□□□□□ -1.61
LIG3-211ENST00000588713 ZNF445P59923 1031 aa5.01□□□□□ -1.61
LIG3-211ENST00000588713 FKBP1AP62942 108 aaKnown RBP5.01□□□□□ -1.61
LIG3-211ENST00000588713 IRX3P78415 501 aaPredicted RBP5.01□□□□□ -1.61
LIG3-211ENST00000588713 KIAA1211Q6ZU35 1233 aa5.01□□□□□ -1.61
LIG3-211ENST00000588713 WWC1Q8IX03 1113 aa5.01□□□□□ -1.61
LIG3-211ENST00000588713 SMAP1Q8IYB5 467 aaPredicted RBP5.01□□□□□ -1.61
LIG3-211ENST00000588713 GPRC5AQ8NFJ5 357 aa5.01□□□□□ -1.61
LIG3-211ENST00000588713 TDRD7Q8NHU6 1098 aaKnown RBP5.01□□□□□ -1.61
LIG3-211ENST00000588713 NEK9Q8TD19 979 aa5.01□□□□□ -1.61
LIG3-211ENST00000588713 PANK1Q8TE04 598 aa5.01□□□□□ -1.61
LIG3-211ENST00000588713 POP1Q99575 1024 aaKnown RBP5.01□□□□□ -1.61
LIG3-211ENST00000588713 PAGR1Q9BTK6 254 aa5.01□□□□□ -1.61
LIG3-211ENST00000588713 ISCA1Q9BUE6 129 aa5.01□□□□□ -1.61
LIG3-211ENST00000588713 PORCNQ9H237 461 aa5.01□□□□□ -1.61
LIG3-211ENST00000588713 TXNRD2Q9NNW7 524 aa5.01□□□□□ -1.61
LIG3-211ENST00000588713 NPDC1Q9NQX5 325 aaPredicted RBP5.01□□□□□ -1.61
LIG3-211ENST00000588713 STARD7Q9NQZ5 370 aa5.01□□□□□ -1.61
LIG3-211ENST00000588713 PHF24Q9UPV7 400 aa5.01□□□□□ -1.61
LIG3-211ENST00000588713 COL4A4P53420 1690 aaPredicted RBP5.01□□□□□ -1.61
LIG3-211ENST00000588713 MAST4O15021 2626 aa5.01□□□□□ -1.61
LIG3-211ENST00000588713 TRIOO75962 3097 aa5□□□□□ -1.61
LIG3-211ENST00000588713 DCDC2BA2VCK2 349 aa5□□□□□ -1.61
LIG3-211ENST00000588713 ZNF500O60304 480 aaPredicted RBP5□□□□□ -1.61
LIG3-211ENST00000588713 PGK1P00558 417 aa5□□□□□ -1.61
LIG3-211ENST00000588713 PRKAR2BP31323 418 aa5□□□□□ -1.61
LIG3-211ENST00000588713 NASPP49321 788 aaPredicted RBP5□□□□□ -1.61
LIG3-211ENST00000588713 HMGCS2P54868 508 aa5□□□□□ -1.61
LIG3-211ENST00000588713 MFAP1P55081 439 aaKnown RBP5□□□□□ -1.61
LIG3-211ENST00000588713 SIGLEC14Q08ET2 396 aa5□□□□□ -1.61
LIG3-211ENST00000588713 PABPC4Q13310 644 aaKnown RBP eCLIP5□□□□□ -1.61
LIG3-211ENST00000588713 KLHL40Q2TBA0 621 aa5□□□□□ -1.61
LIG3-211ENST00000588713 ANKRD33Q7Z3H0 272 aa5□□□□□ -1.61
LIG3-211ENST00000588713 ZNF804AQ7Z570 1209 aa5□□□□□ -1.61
LIG3-211ENST00000588713 FAM83AQ86UY5 434 aa5□□□□□ -1.61
LIG3-211ENST00000588713 CCDC146Q8IYE0 955 aa5□□□□□ -1.61
LIG3-211ENST00000588713 TTC13Q8NBP0 860 aa5□□□□□ -1.61
LIG3-211ENST00000588713 RUNDC1Q96C34 613 aa5□□□□□ -1.61
LIG3-211ENST00000588713 TOX2Q96NM4 488 aa5□□□□□ -1.61
LIG3-211ENST00000588713 GZF1Q9H116 711 aaPredicted RBP5□□□□□ -1.61
LIG3-211ENST00000588713 DBF4Q9UBU7 674 aaPredicted RBP5□□□□□ -1.61
LIG3-211ENST00000588713 MORF4L1Q9UBU8 362 aa5□□□□□ -1.61
LIG3-211ENST00000588713 PCDHB15Q9Y5E8 787 aa5□□□□□ -1.61
LIG3-211ENST00000588713 RFX7Q2KHR2 1363 aa5□□□□□ -1.61
LIG3-211ENST00000588713 IL16Q14005 1332 aa4.99□□□□□ -1.61
LIG3-211ENST00000588713 ASH1LQ9NR48 2969 aaKnown RBP4.99□□□□□ -1.61
LIG3-211ENST00000588713 STXBP3O00186 592 aa4.99□□□□□ -1.61
LIG3-211ENST00000588713 DYNC1I1O14576 645 aa4.99□□□□□ -1.61
LIG3-211ENST00000588713 SEPT4O43236 478 aa4.99□□□□□ -1.61
LIG3-211ENST00000588713 PDE8AO60658 829 aa4.99□□□□□ -1.61
LIG3-211ENST00000588713 LMNAP02545 664 aaKnown RBP4.99□□□□□ -1.61
LIG3-211ENST00000588713 HSP90B1P14625 803 aaKnown RBP4.99□□□□□ -1.61
LIG3-211ENST00000588713 IL1R1P14778 569 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms