RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 AOX1Q06278 1338 aa12.48□□□□□ -0.41
SS18-221ENST00000582448 USP17L15C9J2P7 530 aa12.48□□□□□ -0.41
SS18-221ENST00000582448 USP17L10C9JJH3 530 aa12.48□□□□□ -0.41
SS18-221ENST00000582448 USP17L13C9JLJ4 530 aa12.48□□□□□ -0.41
SS18-221ENST00000582448 USP17L12C9JPN9 530 aa12.48□□□□□ -0.41
SS18-221ENST00000582448 USP17L11C9JVI0 530 aa12.48□□□□□ -0.41
SS18-221ENST00000582448 USP17L21D6R901 530 aa12.48□□□□□ -0.41
SS18-221ENST00000582448 USP17L18D6R9N7 530 aa12.48□□□□□ -0.41
SS18-221ENST00000582448 USP17L22D6RA61 530 aa12.48□□□□□ -0.41
SS18-221ENST00000582448 USP17L17D6RBQ6 530 aa12.48□□□□□ -0.41
SS18-221ENST00000582448 USP17L19D6RCP7 530 aa12.48□□□□□ -0.41
SS18-221ENST00000582448 USP17L20D6RJB6 530 aa12.48□□□□□ -0.41
SS18-221ENST00000582448 LGR5O75473 907 aa12.48□□□□□ -0.41
SS18-221ENST00000582448 CSF1RP07333 972 aa12.48□□□□□ -0.41
SS18-221ENST00000582448 SEC13P55735 322 aa12.48□□□□□ -0.41
SS18-221ENST00000582448 USP17L24Q0WX57 530 aa12.48□□□□□ -0.41
SS18-221ENST00000582448 DPYDQ12882 1025 aa12.48□□□□□ -0.41
SS18-221ENST00000582448 ZNF804AQ7Z570 1209 aa12.48□□□□□ -0.41
SS18-221ENST00000582448 ANKRD13AQ8IZ07 590 aa12.48□□□□□ -0.41
SS18-221ENST00000582448 OPTNQ96CV9 577 aa12.48□□□□□ -0.41
SS18-221ENST00000582448 ZNF232Q9UNY5 417 aa12.48□□□□□ -0.41
SS18-221ENST00000582448 PCDHGC4Q9Y5F7 938 aa12.48□□□□□ -0.41
SS18-221ENST00000582448 SPEF2Q9C093 1822 aa12.48□□□□□ -0.41
SS18-221ENST00000582448 SERTM1A2A2V5 107 aa12.47□□□□□ -0.41
SS18-221ENST00000582448 FAM196BA6NMK8 535 aa12.47□□□□□ -0.41
SS18-221ENST00000582448 C2CD2LO14523 706 aa12.47□□□□□ -0.41
SS18-221ENST00000582448 FGFR3P22607 806 aa12.47□□□□□ -0.41
SS18-221ENST00000582448 CTBSQ01459 385 aa12.47□□□□□ -0.41
SS18-221ENST00000582448 CAP1Q01518 475 aa12.47□□□□□ -0.41
SS18-221ENST00000582448 IFIT5Q13325 482 aaKnown RBP12.47□□□□□ -0.41
SS18-221ENST00000582448 TAF7LQ5H9L4 462 aa12.47□□□□□ -0.41
SS18-221ENST00000582448 PLA2G12BQ9BX93 195 aa12.47□□□□□ -0.41
SS18-221ENST00000582448 USP44Q9H0E7 712 aa12.47□□□□□ -0.41
SS18-221ENST00000582448 DCTPP1Q9H773 170 aa12.47□□□□□ -0.41
SS18-221ENST00000582448 TDRD3Q9H7E2 651 aaKnown RBP12.47□□□□□ -0.41
SS18-221ENST00000582448 TCP10L2B9ZVM9 353 aa12.46□□□□□ -0.41
SS18-221ENST00000582448 ATXN7O15265 892 aaPredicted RBP12.46□□□□□ -0.41
SS18-221ENST00000582448 RFX1P22670 979 aa12.46□□□□□ -0.41
SS18-221ENST00000582448 CASP7P55210 303 aa12.46□□□□□ -0.41
SS18-221ENST00000582448 PSMA6P60900 246 aaKnown RBP12.46□□□□□ -0.41
SS18-221ENST00000582448 TAF1CQ15572 869 aaPredicted RBP12.46□□□□□ -0.41
SS18-221ENST00000582448 SLC9C1Q4G0N8 1177 aa12.46□□□□□ -0.41
SS18-221ENST00000582448 FIGNL1Q6PIW4 674 aa12.46□□□□□ -0.41
SS18-221ENST00000582448 NBPF11Q86T75 865 aa12.46□□□□□ -0.41
SS18-221ENST00000582448 ARMC5Q96C12 935 aa12.46□□□□□ -0.41
SS18-221ENST00000582448 ZFYVE28Q9HCC9 887 aa12.46□□□□□ -0.41
SS18-221ENST00000582448 LRRFIP2Q9Y608 721 aaKnown RBP12.46□□□□□ -0.41
SS18-221ENST00000582448 SSC5DA1L4H1 1573 aa12.46□□□□□ -0.42
SS18-221ENST00000582448 COL1A1P02452 1464 aaPredicted RBP12.46□□□□□ -0.42
SS18-221ENST00000582448 CCL15-CCL14A0A0B4J2E2 113 aa12.45□□□□□ -0.42
SS18-221ENST00000582448 UNCXA6NJT0 531 aa12.45□□□□□ -0.42
SS18-221ENST00000582448 IL1R1P14778 569 aa12.45□□□□□ -0.42
SS18-221ENST00000582448 FXR1P51114 621 aaKnown RBP eCLIP12.45□□□□□ -0.42
SS18-221ENST00000582448 ATP8B2P98198 1209 aa12.45□□□□□ -0.42
SS18-221ENST00000582448 ARHGEF6Q15052 776 aa12.45□□□□□ -0.42
SS18-221ENST00000582448 CCL15Q16663 113 aa12.45□□□□□ -0.42
SS18-221ENST00000582448 SKAP1Q86WV1 359 aa12.45□□□□□ -0.42
SS18-221ENST00000582448 ANKMY2Q8IV38 441 aa12.45□□□□□ -0.42
SS18-221ENST00000582448 SIRT2Q8IXJ6 389 aa12.45□□□□□ -0.42
SS18-221ENST00000582448 BACH2Q9BYV9 841 aa12.45□□□□□ -0.42
SS18-221ENST00000582448 CNNM1Q9NRU3 951 aa12.45□□□□□ -0.42
SS18-221ENST00000582448 ZNF70Q9UC06 446 aaPredicted RBP12.45□□□□□ -0.42
SS18-221ENST00000582448 TTF2Q9UNY4 1162 aaKnown RBP12.45□□□□□ -0.42
SS18-221ENST00000582448 PTCH2Q9Y6C5 1203 aa12.45□□□□□ -0.42
SS18-221ENST00000582448 DCDC2BA2VCK2 349 aa12.44□□□□□ -0.42
SS18-221ENST00000582448 MAP2K3P46734 347 aa12.44□□□□□ -0.42
SS18-221ENST00000582448 TNP2Q05952 138 aa12.44□□□□□ -0.42
SS18-221ENST00000582448 TNFAIP1Q13829 316 aa12.44□□□□□ -0.42
SS18-221ENST00000582448 CCDC57Q2TAC2 916 aa12.44□□□□□ -0.42
SS18-221ENST00000582448 HSP90AB4PQ58FF6 505 aa12.44□□□□□ -0.42
SS18-221ENST00000582448 LDHAL6AQ6ZMR3 332 aa12.44□□□□□ -0.42
SS18-221ENST00000582448 BRI3BPQ8WY22 251 aa12.44□□□□□ -0.42
SS18-221ENST00000582448 ZNF333Q96JL9 665 aa12.44□□□□□ -0.42
SS18-221ENST00000582448 LNPKQ9C0E8 428 aa12.44□□□□□ -0.42
SS18-221ENST00000582448 HCN4Q9Y3Q4 1203 aa12.44□□□□□ -0.42
SS18-221ENST00000582448 IRS2Q9Y4H2 1338 aa12.43□□□□□ -0.42
SS18-221ENST00000582448 MKI67P46013 3256 aaKnown RBP12.43□□□□□ -0.42
SS18-221ENST00000582448 GRM8O00222 908 aa12.43□□□□□ -0.42
SS18-221ENST00000582448 EIF5BO60841 1220 aaKnown RBP12.43□□□□□ -0.42
SS18-221ENST00000582448 MAPTP10636 758 aaKnown RBP12.43□□□□□ -0.42
SS18-221ENST00000582448 ANP32AP39687 249 aaKnown RBP12.43□□□□□ -0.42
SS18-221ENST00000582448 FKBP1AP62942 108 aaKnown RBP12.43□□□□□ -0.42
SS18-221ENST00000582448 FOXO4P98177 505 aa12.43□□□□□ -0.42
SS18-221ENST00000582448 MFSD14BQ5SR56 506 aa12.43□□□□□ -0.42
SS18-221ENST00000582448 LMBR1LQ6UX01 489 aa12.43□□□□□ -0.42
SS18-221ENST00000582448 C15orf52Q6ZUT6 534 aaKnown RBP12.43□□□□□ -0.42
SS18-221ENST00000582448 FAM43AQ8N2R8 423 aa12.43□□□□□ -0.42
SS18-221ENST00000582448 SH3TC2Q8TF17 1288 aa12.43□□□□□ -0.42
SS18-221ENST00000582448 SCG3Q8WXD2 468 aaKnown RBP12.43□□□□□ -0.42
SS18-221ENST00000582448 TMEM39BQ9GZU3 492 aa12.43□□□□□ -0.42
SS18-221ENST00000582448 UPF2Q9HAU5 1272 aaKnown RBP12.43□□□□□ -0.42
SS18-221ENST00000582448 CSADQ9Y600 493 aa12.43□□□□□ -0.42
SS18-221ENST00000582448 WDHD1O75717 1129 aaPredicted RBP12.42□□□□□ -0.42
SS18-221ENST00000582448 BCRP11274 1271 aa12.42□□□□□ -0.42
SS18-221ENST00000582448 GYG1P46976 350 aa12.42□□□□□ -0.42
SS18-221ENST00000582448 GTF2A2P52657 109 aa12.42□□□□□ -0.42
SS18-221ENST00000582448 MAP3K10Q02779 954 aa12.42□□□□□ -0.42
SS18-221ENST00000582448 VGLL4Q14135 290 aa12.42□□□□□ -0.42
SS18-221ENST00000582448 KIF22Q14807 665 aa12.42□□□□□ -0.42
SS18-221ENST00000582448 C1orf229Q6ZS94 237 aaPredicted RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 176.8 ms