RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 GPAA1O43292 621 aa12.67□□□□□ -0.38
RFFL-209ENST00000581265 RAD21O60216 631 aa12.67□□□□□ -0.38
RFFL-209ENST00000581265 NDUFB10O96000 172 aa12.67□□□□□ -0.38
RFFL-209ENST00000581265 MYCNP04198 464 aaPredicted RBP12.67□□□□□ -0.38
RFFL-209ENST00000581265 ZNF865P0CJ78 1059 aaPredicted RBP12.67□□□□□ -0.38
RFFL-209ENST00000581265 TAL1P17542 331 aaPredicted RBP12.67□□□□□ -0.38
RFFL-209ENST00000581265 TRIM60Q495X7 471 aa12.67□□□□□ -0.38
RFFL-209ENST00000581265 C9orf50Q5SZB4 431 aa12.67□□□□□ -0.38
RFFL-209ENST00000581265 RNF180Q86T96 592 aa12.67□□□□□ -0.38
RFFL-209ENST00000581265 FERMT2Q96AC1 680 aa12.67□□□□□ -0.38
RFFL-209ENST00000581265 NUP88Q99567 741 aaPredicted RBP12.67□□□□□ -0.38
RFFL-209ENST00000581265 ZNF287Q9HBT7 754 aa12.67□□□□□ -0.38
RFFL-209ENST00000581265 XPNPEP3Q9NQH7 507 aa12.67□□□□□ -0.38
RFFL-209ENST00000581265 SYNPO2Q9UMS6 1093 aa12.67□□□□□ -0.38
RFFL-209ENST00000581265 MYH7P12883 1935 aa12.66□□□□□ -0.38
RFFL-209ENST00000581265 DNAJC25-GNG10A0A024R161 153 aa12.66□□□□□ -0.38
RFFL-209ENST00000581265 PATL2C9JE40 543 aaKnown RBP12.66□□□□□ -0.38
RFFL-209ENST00000581265 TLE2Q04725 743 aa12.66□□□□□ -0.38
RFFL-209ENST00000581265 LRRFIP1Q32MZ4 808 aaKnown RBP12.66□□□□□ -0.38
RFFL-209ENST00000581265 MAMDC4Q6UXC1 1216 aa12.66□□□□□ -0.38
RFFL-209ENST00000581265 ZNF444Q8N0Y2 327 aaPredicted RBP12.66□□□□□ -0.38
RFFL-209ENST00000581265 STK11IPQ8N1F8 1099 aa12.66□□□□□ -0.38
RFFL-209ENST00000581265 EPB41L4AQ9HCS5 686 aaPredicted RBP12.66□□□□□ -0.38
RFFL-209ENST00000581265 PDLIM7Q9NR12 457 aa12.66□□□□□ -0.38
RFFL-209ENST00000581265 CLIP2Q9UDT6 1046 aa12.66□□□□□ -0.38
RFFL-209ENST00000581265 CNPY2Q9Y2B0 182 aa12.66□□□□□ -0.38
RFFL-209ENST00000581265 RIPK3Q9Y572 518 aa12.66□□□□□ -0.38
RFFL-209ENST00000581265 TACC3Q9Y6A5 838 aa12.66□□□□□ -0.38
RFFL-209ENST00000581265 TRIM43BA6NCK2 446 aa12.65□□□□□ -0.38
RFFL-209ENST00000581265 ZBED4O75132 1171 aa12.65□□□□□ -0.38
RFFL-209ENST00000581265 SNAI1O95863 264 aaPredicted RBP12.65□□□□□ -0.38
RFFL-209ENST00000581265 PGK1P00558 417 aa12.65□□□□□ -0.38
RFFL-209ENST00000581265 APPP05067 770 aa12.65□□□□□ -0.38
RFFL-209ENST00000581265 AKR1A1P14550 325 aa12.65□□□□□ -0.38
RFFL-209ENST00000581265 HOXD11P31277 338 aaPredicted RBP12.65□□□□□ -0.38
RFFL-209ENST00000581265 TSHZ3Q63HK5 1081 aa12.65□□□□□ -0.38
RFFL-209ENST00000581265 SNRNP48Q6IEG0 339 aaKnown RBP12.65□□□□□ -0.38
RFFL-209ENST00000581265 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.65□□□□□ -0.38
RFFL-209ENST00000581265 SH3RF1Q7Z6J0 888 aa12.65□□□□□ -0.38
RFFL-209ENST00000581265 ZNF467Q7Z7K2 595 aaPredicted RBP12.65□□□□□ -0.38
RFFL-209ENST00000581265 IFNL3Q8IZI9 196 aa12.65□□□□□ -0.38
RFFL-209ENST00000581265 BADQ92934 168 aa12.65□□□□□ -0.38
RFFL-209ENST00000581265 TRIM43Q96BQ3 446 aaPredicted RBP12.65□□□□□ -0.38
RFFL-209ENST00000581265 DDX11Q96FC9 970 aa12.65□□□□□ -0.38
RFFL-209ENST00000581265 TSEN34Q9BSV6 310 aaKnown RBP12.65□□□□□ -0.38
RFFL-209ENST00000581265 MTMR4Q9NYA4 1195 aa12.65□□□□□ -0.38
RFFL-209ENST00000581265 COL11A1P12107 1806 aaPredicted RBP12.65□□□□□ -0.39
RFFL-209ENST00000581265 TTC41PQ6P2S7 1318 aa12.64□□□□□ -0.39
RFFL-209ENST00000581265 SYNGAP1Q96PV0 1343 aa12.64□□□□□ -0.39
RFFL-209ENST00000581265 GREB1LQ9C091 1923 aaPredicted RBP12.64□□□□□ -0.39
RFFL-209ENST00000581265 M0R2C6 588 aa12.64□□□□□ -0.39
RFFL-209ENST00000581265 ADAMTS4O75173 837 aa12.64□□□□□ -0.39
RFFL-209ENST00000581265 PRDM1O75626 825 aa12.64□□□□□ -0.39
RFFL-209ENST00000581265 TTLL1O95922 423 aa12.64□□□□□ -0.39
RFFL-209ENST00000581265 TDO2P48775 406 aa12.64□□□□□ -0.39
RFFL-209ENST00000581265 OAZ1P54368 228 aa12.64□□□□□ -0.39
RFFL-209ENST00000581265 USP38Q8NB14 1042 aa12.64□□□□□ -0.39
RFFL-209ENST00000581265 GMCL1P1Q8NEA9 526 aa12.64□□□□□ -0.39
RFFL-209ENST00000581265 KLHDC9Q8NEP7 349 aa12.64□□□□□ -0.39
RFFL-209ENST00000581265 NEDD1Q8NHV4 660 aa12.64□□□□□ -0.39
RFFL-209ENST00000581265 ADAMTS19Q8TE59 1207 aa12.64□□□□□ -0.39
RFFL-209ENST00000581265 ATXN2LQ8WWM7 1075 aaKnown RBP12.64□□□□□ -0.39
RFFL-209ENST00000581265 CEP95Q96GE4 821 aa12.64□□□□□ -0.39
RFFL-209ENST00000581265 RNPC3Q96LT9 517 aaKnown RBP12.64□□□□□ -0.39
RFFL-209ENST00000581265 TOX2Q96NM4 488 aa12.64□□□□□ -0.39
RFFL-209ENST00000581265 UHRF1Q96T88 793 aaPredicted RBP12.64□□□□□ -0.39
RFFL-209ENST00000581265 NACAP1Q9BZK3 213 aa12.64□□□□□ -0.39
RFFL-209ENST00000581265 SLC38A10Q9HBR0 1119 aa12.64□□□□□ -0.39
RFFL-209ENST00000581265 FEM1BQ9UK73 627 aa12.64□□□□□ -0.39
RFFL-209ENST00000581265 FAM184BQ9ULE4 1060 aa12.64□□□□□ -0.39
RFFL-209ENST00000581265 A0A1W2PQ45 241 aaPredicted RBP12.63□□□□□ -0.39
RFFL-209ENST00000581265 A0A1W2PQY0 241 aa12.63□□□□□ -0.39
RFFL-209ENST00000581265 KIAA0355O15063 1070 aa12.63□□□□□ -0.39
RFFL-209ENST00000581265 ERC2O15083 957 aa12.63□□□□□ -0.39
RFFL-209ENST00000581265 CLTBP09497 229 aa12.63□□□□□ -0.39
RFFL-209ENST00000581265 FDX1P10109 184 aa12.63□□□□□ -0.39
RFFL-209ENST00000581265 ITGB8P26012 769 aa12.63□□□□□ -0.39
RFFL-209ENST00000581265 GRIN2CQ14957 1233 aa12.63□□□□□ -0.39
RFFL-209ENST00000581265 CCSAPQ6IQ19 270 aaPredicted RBP12.63□□□□□ -0.39
RFFL-209ENST00000581265 ANKRD33Q7Z3H0 272 aa12.63□□□□□ -0.39
RFFL-209ENST00000581265 CPXCR1Q8N123 301 aa12.63□□□□□ -0.39
RFFL-209ENST00000581265 CHST13Q8NET6 341 aa12.63□□□□□ -0.39
RFFL-209ENST00000581265 PI4K2BQ8TCG2 481 aa12.63□□□□□ -0.39
RFFL-209ENST00000581265 KIFC2Q96AC6 838 aa12.63□□□□□ -0.39
RFFL-209ENST00000581265 GAS2L1Q99501 681 aaPredicted RBP12.63□□□□□ -0.39
RFFL-209ENST00000581265 C1QTNF1Q9BXJ1 281 aa12.63□□□□□ -0.39
RFFL-209ENST00000581265 THEGQ9P2T0 379 aa12.63□□□□□ -0.39
RFFL-209ENST00000581265 FBXO40Q9UH90 709 aa12.63□□□□□ -0.39
RFFL-209ENST00000581265 MOXD2PA6NHM9 499 aa12.62□□□□□ -0.39
RFFL-209ENST00000581265 DUSP11O75319 330 aaKnown RBP12.62□□□□□ -0.39
RFFL-209ENST00000581265 ACLYP53396 1101 aa12.62□□□□□ -0.39
RFFL-209ENST00000581265 MRPS5P82675 430 aaKnown RBP12.62□□□□□ -0.39
RFFL-209ENST00000581265 PDE4BQ07343 736 aa12.62□□□□□ -0.39
RFFL-209ENST00000581265 ACVR2BQ13705 512 aa12.62□□□□□ -0.39
RFFL-209ENST00000581265 ZMYM1Q5SVZ6 1142 aa12.62□□□□□ -0.39
RFFL-209ENST00000581265 NUP133Q8WUM0 1156 aa12.62□□□□□ -0.39
RFFL-209ENST00000581265 ASB2Q96Q27 587 aa12.62□□□□□ -0.39
RFFL-209ENST00000581265 SEC62Q99442 399 aaKnown RBP12.62□□□□□ -0.39
RFFL-209ENST00000581265 ABHD16BQ9H3Z7 469 aa12.62□□□□□ -0.39
RFFL-209ENST00000581265 RAVER2Q9HCJ3 691 aaKnown RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms