RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 SAPCD2Q86UD0 394 aa12.43□□□□□ -0.42
SS18-213ENST00000579640 ADGRF4Q8IZF3 695 aa12.43□□□□□ -0.42
SS18-213ENST00000579640 FAM177A1Q8N128 213 aaPredicted RBP12.43□□□□□ -0.42
SS18-213ENST00000579640 RPAP3Q9H6T3 665 aaPredicted RBP12.43□□□□□ -0.42
SS18-213ENST00000579640 SEC63Q9UGP8 760 aaKnown RBP12.43□□□□□ -0.42
SS18-213ENST00000579640 TLL2Q9Y6L7 1015 aa12.43□□□□□ -0.42
SS18-213ENST00000579640 hCG_1984214I3L0E3 225 aa12.42□□□□□ -0.42
SS18-213ENST00000579640 XBP1P17861 261 aa12.42□□□□□ -0.42
SS18-213ENST00000579640 NUCB2P80303 420 aa12.42□□□□□ -0.42
SS18-213ENST00000579640 PFKFB3Q16875 520 aaPredicted RBP12.42□□□□□ -0.42
SS18-213ENST00000579640 SLC35G1Q2M3R5 365 aa12.42□□□□□ -0.42
SS18-213ENST00000579640 LARP1BQ659C4 914 aaKnown RBP12.42□□□□□ -0.42
SS18-213ENST00000579640 ZNF713Q8N859 430 aaPredicted RBP12.42□□□□□ -0.42
SS18-213ENST00000579640 MTMR8Q96EF0 704 aa12.42□□□□□ -0.42
SS18-213ENST00000579640 HHIPL1Q96JK4 782 aa12.42□□□□□ -0.42
SS18-213ENST00000579640 ALG1Q9BT22 464 aa12.42□□□□□ -0.42
SS18-213ENST00000579640 TANGO6Q9C0B7 1094 aa12.42□□□□□ -0.42
SS18-213ENST00000579640 JMJD4Q9H9V9 463 aa12.42□□□□□ -0.42
SS18-213ENST00000579640 USP17L15C9J2P7 530 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 USP17L13C9JLJ4 530 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 USP17L11C9JVI0 530 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 USP17L18D6R9N7 530 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 USP17L22D6RA61 530 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 USP17L17D6RBQ6 530 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 USP17L19D6RCP7 530 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 USP17L20D6RJB6 530 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 FDX1P10109 184 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 SCG2P13521 617 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 SLC16A2P36021 539 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 GJA5P36382 358 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 GTF2A2P52657 109 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 USP17L24Q0WX57 530 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 PABPC4Q13310 644 aaKnown RBP eCLIP12.41□□□□□ -0.42
SS18-213ENST00000579640 PKN1Q16512 942 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 SPRYD7Q5W111 196 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 RGMBQ6NW40 437 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 PRPF38AQ8NAV1 312 aaKnown RBP12.41□□□□□ -0.42
SS18-213ENST00000579640 C8orf76Q96K31 380 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 SLF1Q9BQI6 1058 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 CPVLQ9H3G5 476 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 VAT1LQ9HCJ6 419 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 CHMP5Q9NZZ3 219 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 PRR12Q9ULL5 1215 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 MYPNQ86TC9 1320 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 PNMA6FA0A0J9YX94 578 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 ZBTB5O15062 677 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 PPFIA3O75145 1194 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 CETPP11597 493 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 SYT1P21579 422 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 HOXA7P31268 230 aaPredicted RBP12.41□□□□□ -0.42
SS18-213ENST00000579640 TRAF1Q13077 416 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 DGKZQ13574 1117 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 TRIM29Q14134 588 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 GADL1Q6ZQY3 521 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 CATSPERGQ6ZRH7 1159 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 PIGSQ96S52 555 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 SH3GLB2Q9NR46 395 aa12.41□□□□□ -0.42
SS18-213ENST00000579640 BAZ2BQ9UIF8 2168 aaKnown RBP12.4□□□□□ -0.42
SS18-213ENST00000579640 H3BQV1 296 aa12.4□□□□□ -0.42
SS18-213ENST00000579640 STX6O43752 255 aa12.4□□□□□ -0.42
SS18-213ENST00000579640 DTNBO60941 627 aa12.4□□□□□ -0.42
SS18-213ENST00000579640 FLOT1O75955 427 aa12.4□□□□□ -0.42
SS18-213ENST00000579640 ZNF157P51786 506 aaPredicted RBP12.4□□□□□ -0.42
SS18-213ENST00000579640 IFFO2Q5TF58 517 aa12.4□□□□□ -0.42
SS18-213ENST00000579640 HOMER1Q86YM7 354 aa12.4□□□□□ -0.42
SS18-213ENST00000579640 RASAL3Q86YV0 1011 aa12.4□□□□□ -0.42
SS18-213ENST00000579640 CCDC12Q8WUD4 166 aaPredicted RBP12.4□□□□□ -0.42
SS18-213ENST00000579640 KIFC2Q96AC6 838 aa12.4□□□□□ -0.42
SS18-213ENST00000579640 RANBP17Q9H2T7 1088 aaKnown RBP12.4□□□□□ -0.42
SS18-213ENST00000579640 PNMA2Q9UL42 364 aa12.4□□□□□ -0.42
SS18-213ENST00000579640 PPP1R9AQ9ULJ8 1098 aa12.4□□□□□ -0.42
SS18-213ENST00000579640 ABT1Q9ULW3 272 aaKnown RBP12.4□□□□□ -0.42
SS18-213ENST00000579640 AGTPBP1Q9UPW5 1226 aa12.4□□□□□ -0.42
SS18-213ENST00000579640 WDR33Q9C0J8 1336 aaKnown RBP12.4□□□□□ -0.42
SS18-213ENST00000579640 COG2Q14746 738 aa12.39□□□□□ -0.43
SS18-213ENST00000579640 CDC37Q16543 378 aaPredicted RBP12.39□□□□□ -0.43
SS18-213ENST00000579640 CCDC148Q8NFR7 591 aa12.39□□□□□ -0.43
SS18-213ENST00000579640 FBXO18Q8NFZ0 1043 aa12.39□□□□□ -0.43
SS18-213ENST00000579640 CCDC102AQ96A19 550 aa12.39□□□□□ -0.43
SS18-213ENST00000579640 HOXC10Q9NYD6 342 aa12.39□□□□□ -0.43
SS18-213ENST00000579640 PARP14Q460N5 1801 aa12.39□□□□□ -0.43
SS18-213ENST00000579640 hCG_1642624A0A1W2PR95 340 aa12.39□□□□□ -0.43
SS18-213ENST00000579640 DSG3P32926 999 aa12.39□□□□□ -0.43
SS18-213ENST00000579640 MOGSQ13724 837 aa12.39□□□□□ -0.43
SS18-213ENST00000579640 QRICH1Q2TAL8 776 aa12.39□□□□□ -0.43
SS18-213ENST00000579640 PPP1R18Q6NYC8 613 aa12.39□□□□□ -0.43
SS18-213ENST00000579640 PIBF1Q8WXW3 757 aa12.39□□□□□ -0.43
SS18-213ENST00000579640 MS4A4AQ96JQ5 239 aa12.39□□□□□ -0.43
SS18-213ENST00000579640 AMNQ9BXJ7 453 aa12.39□□□□□ -0.43
SS18-213ENST00000579640 FBXO28Q9NVF7 368 aa12.39□□□□□ -0.43
SS18-213ENST00000579640 BARHL2Q9NY43 387 aa12.39□□□□□ -0.43
SS18-213ENST00000579640 SLC45A1Q9Y2W3 748 aa12.39□□□□□ -0.43
SS18-213ENST00000579640 CCL15-CCL14A0A0B4J2E2 113 aa12.38□□□□□ -0.43
SS18-213ENST00000579640 VPS37CA5D8V6 355 aaPredicted RBP12.38□□□□□ -0.43
SS18-213ENST00000579640 MANSC4A6NHS7 340 aaPredicted RBP12.38□□□□□ -0.43
SS18-213ENST00000579640 ZBED4O75132 1171 aa12.38□□□□□ -0.43
SS18-213ENST00000579640 BRD1O95696 1058 aa12.38□□□□□ -0.43
SS18-213ENST00000579640 SLC10A3P09131 477 aa12.38□□□□□ -0.43
SS18-213ENST00000579640 OSBPP22059 807 aa12.38□□□□□ -0.43
SS18-213ENST00000579640 APLP1P51693 650 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms