RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 FAM160B2Q86V87 743 aa22.91■■□□□ 1.26
SS18-209ENST00000578595 SHCBP1Q8NEM2 672 aa22.91■■□□□ 1.26
SS18-209ENST00000578595 CHURC1Q8WUH1 139 aa22.91■■□□□ 1.26
SS18-209ENST00000578595 DCAF4Q8WV16 495 aa22.91■■□□□ 1.26
SS18-209ENST00000578595 APBA2Q99767 749 aa22.91■■□□□ 1.26
SS18-209ENST00000578595 RNF208Q9H0X6 261 aa22.91■■□□□ 1.26
SS18-209ENST00000578595 MROH8Q9H579 483 aa22.91■■□□□ 1.26
SS18-209ENST00000578595 CENPFP49454 3210 aa22.91■■□□□ 1.26
SS18-209ENST00000578595 TNKSO95271 1327 aa22.9■■□□□ 1.26
SS18-209ENST00000578595 SLC25A27O95847 323 aa22.9■■□□□ 1.26
SS18-209ENST00000578595 NT5C2P49902 561 aa22.9■■□□□ 1.26
SS18-209ENST00000578595 RCSD1Q6JBY9 416 aa22.9■■□□□ 1.26
SS18-209ENST00000578595 DPP9Q86TI2 863 aa22.9■■□□□ 1.26
SS18-209ENST00000578595 ZSCAN10Q96SZ4 725 aaPredicted RBP22.9■■□□□ 1.26
SS18-209ENST00000578595 KAT14Q9H8E8 782 aa22.9■■□□□ 1.26
SS18-209ENST00000578595 GPCPD1Q9NPB8 672 aa22.9■■□□□ 1.26
SS18-209ENST00000578595 MLLT1Q03111 559 aaPredicted RBP22.89■■□□□ 1.25
SS18-209ENST00000578595 MORN1Q5T089 497 aa22.89■■□□□ 1.25
SS18-209ENST00000578595 TRIB2Q92519 343 aa22.89■■□□□ 1.25
SS18-209ENST00000578595 MAP4K1Q92918 833 aa22.89■■□□□ 1.25
SS18-209ENST00000578595 TTC14Q96N46 770 aa22.89■■□□□ 1.25
SS18-209ENST00000578595 TEX13BQ9BXU2 312 aa22.89■■□□□ 1.25
SS18-209ENST00000578595 UNC93B1Q9H1C4 597 aa22.89■■□□□ 1.25
SS18-209ENST00000578595 RAVER2Q9HCJ3 691 aaKnown RBP22.89■■□□□ 1.25
SS18-209ENST00000578595 ZSWIM5Q9P217 1185 aa22.89■■□□□ 1.25
SS18-209ENST00000578595 ADAMTS5Q9UNA0 930 aa22.89■■□□□ 1.25
SS18-209ENST00000578595 PDE4DIPQ5VU43 2346 aa22.88■■□□□ 1.25
SS18-209ENST00000578595 SMCHD1A6NHR9 2005 aa22.88■■□□□ 1.25
SS18-209ENST00000578595 FCER1AP12319 257 aa22.88■■□□□ 1.25
SS18-209ENST00000578595 ADORA2AP29274 412 aa22.88■■□□□ 1.25
SS18-209ENST00000578595 COPB2P35606 906 aa22.88■■□□□ 1.25
SS18-209ENST00000578595 GRB14Q14449 540 aa22.88■■□□□ 1.25
SS18-209ENST00000578595 CCL14Q16627 93 aa22.88■■□□□ 1.25
SS18-209ENST00000578595 RIOX2Q8IUF8 465 aa22.88■■□□□ 1.25
SS18-209ENST00000578595 NCOA7Q8NI08 942 aa22.88■■□□□ 1.25
SS18-209ENST00000578595 LSG1Q9H089 658 aaKnown RBP22.88■■□□□ 1.25
SS18-209ENST00000578595 ZNF214Q9UL59 606 aaPredicted RBP22.88■■□□□ 1.25
SS18-209ENST00000578595 E7EWF7 191 aa22.87■■□□□ 1.25
SS18-209ENST00000578595 CCDC174Q6PII3 467 aa22.87■■□□□ 1.25
SS18-209ENST00000578595 DGKHQ86XP1 1220 aa22.87■■□□□ 1.25
SS18-209ENST00000578595 TRMT44Q8IYL2 757 aaKnown RBP22.87■■□□□ 1.25
SS18-209ENST00000578595 PNMA1Q8ND90 353 aa22.87■■□□□ 1.25
SS18-209ENST00000578595 REPS2Q8NFH8 660 aa22.87■■□□□ 1.25
SS18-209ENST00000578595 MMP19Q99542 508 aa22.87■■□□□ 1.25
SS18-209ENST00000578595 HOMER2Q9NSB8 354 aa22.87■■□□□ 1.25
SS18-209ENST00000578595 ERICH2A1L162 156 aa22.86■■□□□ 1.25
SS18-209ENST00000578595 STRNO43815 780 aa22.86■■□□□ 1.25
SS18-209ENST00000578595 XRCC5P13010 732 aaKnown RBP22.86■■□□□ 1.25
SS18-209ENST00000578595 EN2P19622 333 aaPredicted RBP22.86■■□□□ 1.25
SS18-209ENST00000578595 SLC16A2P36021 539 aa22.86■■□□□ 1.25
SS18-209ENST00000578595 NOVP48745 357 aa22.86■■□□□ 1.25
SS18-209ENST00000578595 SNAP25P60880 206 aa22.86■■□□□ 1.25
SS18-209ENST00000578595 TRIM32Q13049 653 aa22.86■■□□□ 1.25
SS18-209ENST00000578595 KCTD2Q14681 263 aa22.86■■□□□ 1.25
SS18-209ENST00000578595 IFIT1BQ5T764 474 aaKnown RBP22.86■■□□□ 1.25
SS18-209ENST00000578595 CYB5R4Q7L1T6 521 aa22.86■■□□□ 1.25
SS18-209ENST00000578595 SLC38A10Q9HBR0 1119 aa22.86■■□□□ 1.25
SS18-209ENST00000578595 SLC5A4Q9NY91 659 aa22.86■■□□□ 1.25
SS18-209ENST00000578595 MCM3APO60318 1980 aa22.86■■□□□ 1.25
SS18-209ENST00000578595 FRMPD3Q5JV73 1810 aa22.85■■□□□ 1.25
SS18-209ENST00000578595 PDHBP11177 359 aa22.85■■□□□ 1.25
SS18-209ENST00000578595 PRKAR2AP13861 404 aaKnown RBP22.85■■□□□ 1.25
SS18-209ENST00000578595 TTBK2Q6IQ55 1244 aa22.85■■□□□ 1.25
SS18-209ENST00000578595 ENAHQ8N8S7 591 aaPredicted RBP22.85■■□□□ 1.25
SS18-209ENST00000578595 USP6NLQ92738 828 aa22.85■■□□□ 1.25
SS18-209ENST00000578595 PRR12Q9ULL5 1215 aa22.85■■□□□ 1.25
SS18-209ENST00000578595 TAF6LQ9Y6J9 622 aa22.85■■□□□ 1.25
SS18-209ENST00000578595 IFIT3O14879 490 aaKnown RBP22.84■■□□□ 1.25
SS18-209ENST00000578595 FDX1P10109 184 aa22.84■■□□□ 1.25
SS18-209ENST00000578595 SART3Q15020 963 aaKnown RBP22.84■■□□□ 1.25
SS18-209ENST00000578595 SYDE2Q5VT97 1194 aa22.84■■□□□ 1.25
SS18-209ENST00000578595 MFSD14CQ5VZR4 134 aa22.84■■□□□ 1.25
SS18-209ENST00000578595 CHST3Q7LGC8 479 aa22.84■■□□□ 1.25
SS18-209ENST00000578595 NPLOC4Q8TAT6 608 aa22.84■■□□□ 1.25
SS18-209ENST00000578595 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.84■■□□□ 1.25
SS18-209ENST00000578595 HMX1Q9NP08 348 aaPredicted RBP22.84■■□□□ 1.25
SS18-209ENST00000578595 GOLGA8HP0CJ92 632 aa22.83■■□□□ 1.25
SS18-209ENST00000578595 RGS19P49795 217 aa22.83■■□□□ 1.25
SS18-209ENST00000578595 ZNF543Q08ER8 600 aa22.83■■□□□ 1.25
SS18-209ENST00000578595 STOX1Q6ZVD7 989 aa22.83■■□□□ 1.25
SS18-209ENST00000578595 DDX11Q96FC9 970 aa22.83■■□□□ 1.25
SS18-209ENST00000578595 DEFB118Q96PH6 123 aa22.83■■□□□ 1.25
SS18-209ENST00000578595 SLC27A2O14975 620 aa22.82■■□□□ 1.24
SS18-209ENST00000578595 DHX16O60231 1041 aaKnown RBP22.82■■□□□ 1.24
SS18-209ENST00000578595 PGK2P07205 417 aa22.82■■□□□ 1.24
SS18-209ENST00000578595 ALAS1P13196 640 aa22.82■■□□□ 1.24
SS18-209ENST00000578595 OAZ1P54368 228 aa22.82■■□□□ 1.24
SS18-209ENST00000578595 RNF20Q5VTR2 975 aa22.82■■□□□ 1.24
SS18-209ENST00000578595 CREB3L3Q68CJ9 461 aa22.82■■□□□ 1.24
SS18-209ENST00000578595 ABRAQ8N0Z2 381 aa22.82■■□□□ 1.24
SS18-209ENST00000578595 RIPK3Q9Y572 518 aa22.82■■□□□ 1.24
SS18-209ENST00000578595 RPTORQ8N122 1335 aa22.82■■□□□ 1.24
SS18-209ENST00000578595 BAZ2BQ9UIF8 2168 aaKnown RBP22.82■■□□□ 1.24
SS18-209ENST00000578595 PLA2G6O60733 806 aa22.81■■□□□ 1.24
SS18-209ENST00000578595 GJB1P08034 283 aa22.81■■□□□ 1.24
SS18-209ENST00000578595 GPATCH4Q5T3I0 446 aaKnown RBP22.81■■□□□ 1.24
SS18-209ENST00000578595 ANKRD35Q8N283 1001 aa22.81■■□□□ 1.24
SS18-209ENST00000578595 U2AF1L4Q8WU68 220 aaKnown RBP22.81■■□□□ 1.24
SS18-209ENST00000578595 AGBL1Q96MI9 1066 aa22.81■■□□□ 1.24
SS18-209ENST00000578595 FLRT1Q9NZU1 646 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms