RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 STX10O60499 249 aa11.43□□□□□ -0.58
VPS53-220ENST00000576149 CDK8P49336 464 aa11.43□□□□□ -0.58
VPS53-220ENST00000576149 ETF1P62495 437 aaKnown RBP11.43□□□□□ -0.58
VPS53-220ENST00000576149 PPP4R3BQ5MIZ7 849 aa11.43□□□□□ -0.58
VPS53-220ENST00000576149 TEX11Q8IYF3 940 aa11.43□□□□□ -0.58
VPS53-220ENST00000576149 SMYD4Q8IYR2 804 aaPredicted RBP11.43□□□□□ -0.58
VPS53-220ENST00000576149 ERO1AQ96HE7 468 aa11.43□□□□□ -0.58
VPS53-220ENST00000576149 BAG1Q99933 345 aaPredicted RBP11.43□□□□□ -0.58
VPS53-220ENST00000576149 SNED1Q8TER0 1413 aa11.42□□□□□ -0.58
VPS53-220ENST00000576149 CCDC194A0A1B0GVG4 234 aa11.42□□□□□ -0.58
VPS53-220ENST00000576149 ZSCAN12O43309 604 aa11.42□□□□□ -0.58
VPS53-220ENST00000576149 SLU7O95391 586 aaKnown RBP11.42□□□□□ -0.58
VPS53-220ENST00000576149 PLCG2P16885 1265 aa11.42□□□□□ -0.58
VPS53-220ENST00000576149 HOXA10P31260 410 aaPredicted RBP11.42□□□□□ -0.58
VPS53-220ENST00000576149 STX17P56962 302 aa11.42□□□□□ -0.58
VPS53-220ENST00000576149 RHBDL3P58872 404 aa11.42□□□□□ -0.58
VPS53-220ENST00000576149 HEATR3Q7Z4Q2 680 aa11.42□□□□□ -0.58
VPS53-220ENST00000576149 SEPT12Q8IYM1 358 aa11.42□□□□□ -0.58
VPS53-220ENST00000576149 NEDD1Q8NHV4 660 aa11.42□□□□□ -0.58
VPS53-220ENST00000576149 EYA3Q99504 573 aa11.42□□□□□ -0.58
VPS53-220ENST00000576149 BLZF1Q9H2G9 400 aa11.42□□□□□ -0.58
VPS53-220ENST00000576149 FLT1P17948 1338 aa11.42□□□□□ -0.58
VPS53-220ENST00000576149 TEX33O43247 280 aa11.41□□□□□ -0.58
VPS53-220ENST00000576149 TXLNAP40222 546 aa11.41□□□□□ -0.58
VPS53-220ENST00000576149 CCDC93Q567U6 631 aa11.41□□□□□ -0.58
VPS53-220ENST00000576149 MFSD14BQ5SR56 506 aa11.41□□□□□ -0.58
VPS53-220ENST00000576149 TRIM65Q6PJ69 517 aa11.41□□□□□ -0.58
VPS53-220ENST00000576149 HOMER1Q86YM7 354 aa11.41□□□□□ -0.58
VPS53-220ENST00000576149 CTAGE1Q96RT6 745 aa11.41□□□□□ -0.58
VPS53-220ENST00000576149 SPZ1Q9BXG8 430 aa11.41□□□□□ -0.58
VPS53-220ENST00000576149 ADD3Q9UEY8 706 aaKnown RBP11.41□□□□□ -0.58
VPS53-220ENST00000576149 POLLQ9UGP5 575 aa11.41□□□□□ -0.58
VPS53-220ENST00000576149 PHLPP2Q6ZVD8 1323 aa11.41□□□□□ -0.58
VPS53-220ENST00000576149 KLRF2D3W0D1 207 aa11.41□□□□□ -0.58
VPS53-220ENST00000576149 ADKP55263 362 aaKnown RBP11.41□□□□□ -0.58
VPS53-220ENST00000576149 SLF2Q8IX21 1173 aa11.41□□□□□ -0.58
VPS53-220ENST00000576149 TBC1D16Q8TBP0 767 aa11.41□□□□□ -0.58
VPS53-220ENST00000576149 IPO4Q8TEX9 1081 aaKnown RBP11.41□□□□□ -0.58
VPS53-220ENST00000576149 TBC1D22AQ8WUA7 517 aa11.41□□□□□ -0.58
VPS53-220ENST00000576149 RNF216Q9NWF9 866 aaPredicted RBP11.41□□□□□ -0.58
VPS53-220ENST00000576149 CGNQ9P2M7 1197 aaKnown RBP11.41□□□□□ -0.58
VPS53-220ENST00000576149 PPP2R2CQ9Y2T4 447 aa11.41□□□□□ -0.58
VPS53-220ENST00000576149 GAKO14976 1311 aa11.41□□□□□ -0.58
VPS53-220ENST00000576149 UBR3Q6ZT12 1888 aa11.41□□□□□ -0.58
VPS53-220ENST00000576149 DDX60LQ5H9U9 1706 aaKnown RBP11.41□□□□□ -0.58
VPS53-220ENST00000576149 GOLGA8HP0CJ92 632 aa11.4□□□□□ -0.58
VPS53-220ENST00000576149 CDC25AP30304 524 aa11.4□□□□□ -0.58
VPS53-220ENST00000576149 PBX1P40424 430 aa11.4□□□□□ -0.58
VPS53-220ENST00000576149 DTHD1Q6ZMT9 781 aa11.4□□□□□ -0.58
VPS53-220ENST00000576149 CRAMP1Q96RY5 1269 aa11.4□□□□□ -0.58
VPS53-220ENST00000576149 DISC1Q9NRI5 854 aa11.4□□□□□ -0.58
VPS53-220ENST00000576149 CTNND2Q9UQB3 1225 aa11.4□□□□□ -0.58
VPS53-220ENST00000576149 MTMR7Q9Y216 660 aa11.4□□□□□ -0.58
VPS53-220ENST00000576149 KLRG2A4D1S0 409 aaPredicted RBP11.4□□□□□ -0.58
VPS53-220ENST00000576149 LAD1O00515 517 aa11.4□□□□□ -0.58
VPS53-220ENST00000576149 RAD21O60216 631 aa11.4□□□□□ -0.58
VPS53-220ENST00000576149 NOVP48745 357 aa11.4□□□□□ -0.58
VPS53-220ENST00000576149 KARSQ15046 597 aaKnown RBP11.4□□□□□ -0.58
VPS53-220ENST00000576149 INF2Q27J81 1249 aa11.4□□□□□ -0.58
VPS53-220ENST00000576149 ZNF658Q5TYW1 1059 aaPredicted RBP11.4□□□□□ -0.58
VPS53-220ENST00000576149 MEX3CQ5U5Q3 659 aaKnown RBP11.4□□□□□ -0.58
VPS53-220ENST00000576149 RRAGBQ5VZM2 374 aa11.4□□□□□ -0.58
VPS53-220ENST00000576149 ZMYND12Q9H0C1 365 aa11.4□□□□□ -0.58
VPS53-220ENST00000576149 TMEM60Q9H2L4 133 aa11.4□□□□□ -0.58
VPS53-220ENST00000576149 RMND1Q9NWS8 449 aa11.4□□□□□ -0.58
VPS53-220ENST00000576149 DNAI1Q9UI46 699 aa11.4□□□□□ -0.58
VPS53-220ENST00000576149 RWDD2AQ9UIY3 292 aa11.4□□□□□ -0.58
VPS53-220ENST00000576149 AFF2P51816 1311 aa11.4□□□□□ -0.58
VPS53-220ENST00000576149 CDK5RAP2Q96SN8 1893 aa11.4□□□□□ -0.58
VPS53-220ENST00000576149 GOLGA6L9A6NEM1 432 aa11.39□□□□□ -0.59
VPS53-220ENST00000576149 AKR1B15C9JRZ8 316 aaPredicted RBP11.39□□□□□ -0.59
VPS53-220ENST00000576149 RPN1P04843 607 aaKnown RBP11.39□□□□□ -0.59
VPS53-220ENST00000576149 PARP1P09874 1014 aaKnown RBP11.39□□□□□ -0.59
VPS53-220ENST00000576149 SMARCA1P28370 1054 aa11.39□□□□□ -0.59
VPS53-220ENST00000576149 PRPHP41219 470 aa11.39□□□□□ -0.59
VPS53-220ENST00000576149 STAT6P42226 847 aa11.39□□□□□ -0.59
VPS53-220ENST00000576149 DDR1Q08345 913 aa11.39□□□□□ -0.59
VPS53-220ENST00000576149 FILIP1LQ4L180 1135 aa11.39□□□□□ -0.59
VPS53-220ENST00000576149 SLC27A3Q5K4L6 730 aa11.39□□□□□ -0.59
VPS53-220ENST00000576149 FAM43BQ6ZT52 329 aaPredicted RBP11.39□□□□□ -0.59
VPS53-220ENST00000576149 RASGRP2Q7LDG7 609 aa11.39□□□□□ -0.59
VPS53-220ENST00000576149 PANX2Q96RD6 677 aa11.39□□□□□ -0.59
VPS53-220ENST00000576149 LRRC10BA6NIK2 292 aa11.39□□□□□ -0.59
VPS53-220ENST00000576149 NAALADL2Q58DX5 795 aa11.39□□□□□ -0.59
VPS53-220ENST00000576149 CC2D2BQ6DHV5 1058 aa11.39□□□□□ -0.59
VPS53-220ENST00000576149 CCDC12Q8WUD4 166 aaPredicted RBP11.39□□□□□ -0.59
VPS53-220ENST00000576149 CEP95Q96GE4 821 aa11.39□□□□□ -0.59
VPS53-220ENST00000576149 CCSER1Q9C0I3 900 aa11.39□□□□□ -0.59
VPS53-220ENST00000576149 LIMA1Q9UHB6 759 aaKnown RBP11.39□□□□□ -0.59
VPS53-220ENST00000576149 C6orf229H3BNL8 230 aa11.38□□□□□ -0.59
VPS53-220ENST00000576149 POLRMTO00411 1230 aaKnown RBP11.38□□□□□ -0.59
VPS53-220ENST00000576149 FANCGO15287 622 aa11.38□□□□□ -0.59
VPS53-220ENST00000576149 RBL2Q08999 1139 aa11.38□□□□□ -0.59
VPS53-220ENST00000576149 PAK1Q13153 545 aa11.38□□□□□ -0.59
VPS53-220ENST00000576149 USP17L2Q6R6M4 530 aa11.38□□□□□ -0.59
VPS53-220ENST00000576149 TOGARAM2Q6ZUX3 1019 aa11.38□□□□□ -0.59
VPS53-220ENST00000576149 IGSF22Q8N9C0 903 aa11.38□□□□□ -0.59
VPS53-220ENST00000576149 CPVLQ9H3G5 476 aa11.38□□□□□ -0.59
VPS53-220ENST00000576149 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.38□□□□□ -0.59
VPS53-220ENST00000576149 TRPC5Q9UL62 973 aaPredicted RBP11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms