RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 TTBK2Q6IQ55 1244 aa21.2■□□□□ 0.98
CCDC40-213ENST00000574933 STAG2Q8N3U4 1231 aa21.2■□□□□ 0.98
CCDC40-213ENST00000574933 CTCFLQ8NI51 663 aaPredicted RBP21.2■□□□□ 0.98
CCDC40-213ENST00000574933 NUP133Q8WUM0 1156 aa21.2■□□□□ 0.98
CCDC40-213ENST00000574933 FRMPD2Q68DX3 1309 aaPredicted RBP21.2■□□□□ 0.98
CCDC40-213ENST00000574933 ZNFX1Q9P2E3 1918 aaKnown RBP21.19■□□□□ 0.98
CCDC40-213ENST00000574933 PDIA3P30101 505 aaKnown RBP21.19■□□□□ 0.98
CCDC40-213ENST00000574933 GNAQP50148 359 aa21.19■□□□□ 0.98
CCDC40-213ENST00000574933 NOM1Q5C9Z4 860 aaKnown RBP21.19■□□□□ 0.98
CCDC40-213ENST00000574933 POTEEQ6S8J3 1075 aa21.19■□□□□ 0.98
CCDC40-213ENST00000574933 MICU3Q86XE3 530 aa21.19■□□□□ 0.98
CCDC40-213ENST00000574933 MB21D1Q8N884 522 aa21.19■□□□□ 0.98
CCDC40-213ENST00000574933 GPCPD1Q9NPB8 672 aa21.19■□□□□ 0.98
CCDC40-213ENST00000574933 FAM217BQ9NTX9 383 aaPredicted RBP21.19■□□□□ 0.98
CCDC40-213ENST00000574933 KLRF2D3W0D1 207 aa21.18■□□□□ 0.98
CCDC40-213ENST00000574933 TRPA1O75762 1119 aa21.18■□□□□ 0.98
CCDC40-213ENST00000574933 GOLGA8HP0CJ92 632 aa21.18■□□□□ 0.98
CCDC40-213ENST00000574933 C17orf99Q6UX52 265 aa21.18■□□□□ 0.98
CCDC40-213ENST00000574933 ATG4CQ96DT6 458 aa21.18■□□□□ 0.98
CCDC40-213ENST00000574933 LZTS2Q9BRK4 669 aa21.18■□□□□ 0.98
CCDC40-213ENST00000574933 RBM28Q9NW13 759 aaKnown RBP21.18■□□□□ 0.98
CCDC40-213ENST00000574933 MORF4L1Q9UBU8 362 aa21.18■□□□□ 0.98
CCDC40-213ENST00000574933 PRR12Q9ULL5 1215 aa21.18■□□□□ 0.98
CCDC40-213ENST00000574933 TPCN1Q9ULQ1 816 aa21.18■□□□□ 0.98
CCDC40-213ENST00000574933 RABGAP1Q9Y3P9 1069 aa21.18■□□□□ 0.98
CCDC40-213ENST00000574933 GOLGA8BA8MQT2 603 aa21.17■□□□□ 0.98
CCDC40-213ENST00000574933 VWA5AO00534 786 aa21.17■□□□□ 0.98
CCDC40-213ENST00000574933 ST18O60284 1047 aa21.17■□□□□ 0.98
CCDC40-213ENST00000574933 BCRP11274 1271 aa21.17■□□□□ 0.98
CCDC40-213ENST00000574933 RXRAP19793 462 aa21.17■□□□□ 0.98
CCDC40-213ENST00000574933 SYDE2Q5VT97 1194 aa21.17■□□□□ 0.98
CCDC40-213ENST00000574933 REPS2Q8NFH8 660 aa21.17■□□□□ 0.98
CCDC40-213ENST00000574933 SMCR8Q8TEV9 937 aaPredicted RBP21.17■□□□□ 0.98
CCDC40-213ENST00000574933 CHMP4CQ96CF2 233 aa21.17■□□□□ 0.98
CCDC40-213ENST00000574933 RIOX1Q9H6W3 641 aa21.17■□□□□ 0.98
CCDC40-213ENST00000574933 RBPJLQ9UBG7 517 aa21.17■□□□□ 0.98
CCDC40-213ENST00000574933 CCDC196A0A1B0GTZ2 297 aa21.16■□□□□ 0.98
CCDC40-213ENST00000574933 GOLGA8AA7E2F4 631 aa21.16■□□□□ 0.98
CCDC40-213ENST00000574933 ATP2A1O14983 1001 aa21.16■□□□□ 0.98
CCDC40-213ENST00000574933 METAP2P50579 478 aaKnown RBP eCLIP21.16■□□□□ 0.98
CCDC40-213ENST00000574933 RTN1Q16799 776 aa21.16■□□□□ 0.98
CCDC40-213ENST00000574933 FAM110CQ1W6H9 321 aa21.16■□□□□ 0.98
CCDC40-213ENST00000574933 SLC35G1Q2M3R5 365 aa21.16■□□□□ 0.98
CCDC40-213ENST00000574933 TMTC3Q6ZXV5 915 aa21.16■□□□□ 0.98
CCDC40-213ENST00000574933 MTMR8Q96EF0 704 aa21.16■□□□□ 0.98
CCDC40-213ENST00000574933 BEGAINQ9BUH8 593 aa21.16■□□□□ 0.98
CCDC40-213ENST00000574933 SPZ1Q9BXG8 430 aa21.16■□□□□ 0.98
CCDC40-213ENST00000574933 RANBP17Q9H2T7 1088 aaKnown RBP21.16■□□□□ 0.98
CCDC40-213ENST00000574933 R3HDMLQ9H3Y0 253 aa21.16■□□□□ 0.98
CCDC40-213ENST00000574933 SLC38A10Q9HBR0 1119 aa21.16■□□□□ 0.98
CCDC40-213ENST00000574933 LIMCH1Q9UPQ0 1083 aa21.16■□□□□ 0.98
CCDC40-213ENST00000574933 PCNTO95613 3336 aa21.15■□□□□ 0.98
CCDC40-213ENST00000574933 PFKFB2O60825 505 aa21.15■□□□□ 0.98
CCDC40-213ENST00000574933 CNMDO75829 334 aa21.15■□□□□ 0.98
CCDC40-213ENST00000574933 CDC27P30260 824 aa21.15■□□□□ 0.98
CCDC40-213ENST00000574933 SLC16A2P36021 539 aa21.15■□□□□ 0.98
CCDC40-213ENST00000574933 RAB11FIP4Q86YS3 637 aa21.15■□□□□ 0.98
CCDC40-213ENST00000574933 KIFC2Q96AC6 838 aa21.15■□□□□ 0.98
CCDC40-213ENST00000574933 LARP6Q9BRS8 491 aaKnown RBP21.15■□□□□ 0.98
CCDC40-213ENST00000574933 UBA5Q9GZZ9 404 aa21.15■□□□□ 0.98
CCDC40-213ENST00000574933 TXNRD2Q9NNW7 524 aa21.15■□□□□ 0.98
CCDC40-213ENST00000574933 ISY1Q9ULR0 285 aaKnown RBP21.15■□□□□ 0.98
CCDC40-213ENST00000574933 CASP8AP2Q9UKL3 1982 aa21.14■□□□□ 0.98
CCDC40-213ENST00000574933 CYTH3O43739 400 aa21.14■□□□□ 0.97
CCDC40-213ENST00000574933 MCM2P49736 904 aa21.14■□□□□ 0.97
CCDC40-213ENST00000574933 OAZ1P54368 228 aa21.14■□□□□ 0.97
CCDC40-213ENST00000574933 FUT2Q10981 343 aa21.14■□□□□ 0.97
CCDC40-213ENST00000574933 IKQ13123 557 aaPredicted RBP21.14■□□□□ 0.97
CCDC40-213ENST00000574933 NBPF11Q86T75 865 aa21.14■□□□□ 0.97
CCDC40-213ENST00000574933 CCDC144CPQ8IYA2 1237 aa21.14■□□□□ 0.97
CCDC40-213ENST00000574933 ADGRF4Q8IZF3 695 aa21.14■□□□□ 0.97
CCDC40-213ENST00000574933 SRBD1Q8N5C6 995 aaKnown RBP21.14■□□□□ 0.97
CCDC40-213ENST00000574933 ZSCAN31Q96LW9 406 aaPredicted RBP21.14■□□□□ 0.97
CCDC40-213ENST00000574933 BTBD7Q9P203 1132 aa21.14■□□□□ 0.97
CCDC40-213ENST00000574933 ZBED4O75132 1171 aa21.13■□□□□ 0.97
CCDC40-213ENST00000574933 PLEKHA8P1O95397 391 aa21.13■□□□□ 0.97
CCDC40-213ENST00000574933 TBC1D8O95759 1140 aa21.13■□□□□ 0.97
CCDC40-213ENST00000574933 NTRK3Q16288 839 aa21.13■□□□□ 0.97
CCDC40-213ENST00000574933 ME3Q16798 604 aa21.13■□□□□ 0.97
CCDC40-213ENST00000574933 CPVLQ9H3G5 476 aa21.13■□□□□ 0.97
CCDC40-213ENST00000574933 JMJD4Q9H9V9 463 aa21.13■□□□□ 0.97
CCDC40-213ENST00000574933 ZNF214Q9UL59 606 aaPredicted RBP21.13■□□□□ 0.97
CCDC40-213ENST00000574933 NAP1L2Q9ULW6 460 aaPredicted RBP21.13■□□□□ 0.97
CCDC40-213ENST00000574933 ZNF536O15090 1300 aa21.12■□□□□ 0.97
CCDC40-213ENST00000574933 ADD1P35611 737 aaKnown RBP21.12■□□□□ 0.97
CCDC40-213ENST00000574933 ERVK-9P63128 1117 aa21.12■□□□□ 0.97
CCDC40-213ENST00000574933 ERVK-24P63145 666 aa21.12■□□□□ 0.97
CCDC40-213ENST00000574933 TMEM132BQ14DG7 1078 aa21.12■□□□□ 0.97
CCDC40-213ENST00000574933 ANKRD13CQ8N6S4 541 aa21.12■□□□□ 0.97
CCDC40-213ENST00000574933 GPRC5AQ8NFJ5 357 aa21.12■□□□□ 0.97
CCDC40-213ENST00000574933 SLKQ9H2G2 1235 aaPredicted RBP21.12■□□□□ 0.97
CCDC40-213ENST00000574933 SH2B1Q9NRF2 756 aaPredicted RBP21.12■□□□□ 0.97
CCDC40-213ENST00000574933 CPA4Q9UI42 421 aa21.12■□□□□ 0.97
CCDC40-213ENST00000574933 PNMA2Q9UL42 364 aa21.12■□□□□ 0.97
CCDC40-213ENST00000574933 PLXNB2O15031 1838 aa21.12■□□□□ 0.97
CCDC40-213ENST00000574933 CNTNAP5Q8WYK1 1306 aa21.11■□□□□ 0.97
CCDC40-213ENST00000574933 RBBP6Q7Z6E9 1792 aaKnown RBP21.11■□□□□ 0.97
CCDC40-213ENST00000574933 CD2BP2O95400 341 aaKnown RBP21.11■□□□□ 0.97
CCDC40-213ENST00000574933 LARGE1O95461 756 aa21.11■□□□□ 0.97
CCDC40-213ENST00000574933 IFNAR1P17181 557 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms