RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 IRF6O14896 467 aa27.8■■■□□ 2.04
ATPAF1-213ENST00000574428 BRD1O95696 1058 aa27.8■■■□□ 2.04
ATPAF1-213ENST00000574428 SCG2P13521 617 aa27.8■■■□□ 2.04
ATPAF1-213ENST00000574428 YY1P25490 414 aa27.8■■■□□ 2.04
ATPAF1-213ENST00000574428 STAT2P52630 851 aa27.8■■■□□ 2.04
ATPAF1-213ENST00000574428 PFKFB3Q16875 520 aaPredicted RBP27.8■■■□□ 2.04
ATPAF1-213ENST00000574428 SLC10A4Q96EP9 437 aa27.8■■■□□ 2.04
ATPAF1-213ENST00000574428 WDR33Q9C0J8 1336 aaKnown RBP27.79■■■□□ 2.04
ATPAF1-213ENST00000574428 SYDE2Q5VT97 1194 aa27.79■■■□□ 2.04
ATPAF1-213ENST00000574428 BTNL9Q6UXG8 535 aa27.79■■■□□ 2.04
ATPAF1-213ENST00000574428 SMC1BQ8NDV3 1235 aa27.79■■■□□ 2.04
ATPAF1-213ENST00000574428 RBM46Q8TBY0 533 aaKnown RBP27.79■■■□□ 2.04
ATPAF1-213ENST00000574428 C12orf42Q96LP6 360 aa27.79■■■□□ 2.04
ATPAF1-213ENST00000574428 PASKQ96RG2 1323 aa27.79■■■□□ 2.04
ATPAF1-213ENST00000574428 UNCXA6NJT0 531 aa27.78■■■□□ 2.04
ATPAF1-213ENST00000574428 PPIL2Q13356 520 aa27.78■■■□□ 2.04
ATPAF1-213ENST00000574428 GPKOWQ92917 476 aaPredicted RBP eCLIP27.78■■■□□ 2.04
ATPAF1-213ENST00000574428 TANGO6Q9C0B7 1094 aa27.78■■■□□ 2.04
ATPAF1-213ENST00000574428 RPAP3Q9H6T3 665 aaPredicted RBP27.78■■■□□ 2.04
ATPAF1-213ENST00000574428 FBXO28Q9NVF7 368 aa27.78■■■□□ 2.04
ATPAF1-213ENST00000574428 TMOD4Q9NZQ9 345 aa27.78■■■□□ 2.04
ATPAF1-213ENST00000574428 VPS54Q9P1Q0 977 aa27.78■■■□□ 2.04
ATPAF1-213ENST00000574428 SEC63Q9UGP8 760 aaKnown RBP27.78■■■□□ 2.04
ATPAF1-213ENST00000574428 ZSCAN22P10073 491 aaPredicted RBP27.78■■■□□ 2.04
ATPAF1-213ENST00000574428 FBXO18Q8NFZ0 1043 aa27.78■■■□□ 2.04
ATPAF1-213ENST00000574428 SHISA4Q96DD7 197 aa27.78■■■□□ 2.04
ATPAF1-213ENST00000574428 PTPRFP10586 1907 aa27.78■■■□□ 2.04
ATPAF1-213ENST00000574428 GJA5P36382 358 aa27.77■■■□□ 2.04
ATPAF1-213ENST00000574428 SNAP25P60880 206 aa27.77■■■□□ 2.04
ATPAF1-213ENST00000574428 SH3D19Q5HYK7 790 aa27.77■■■□□ 2.04
ATPAF1-213ENST00000574428 SAMD1Q6SPF0 538 aaPredicted RBP27.77■■■□□ 2.04
ATPAF1-213ENST00000574428 FEM1BQ9UK73 627 aa27.77■■■□□ 2.04
ATPAF1-213ENST00000574428 PRR12Q9ULL5 1215 aa27.77■■■□□ 2.04
ATPAF1-213ENST00000574428 TRIM29Q14134 588 aa27.76■■■□□ 2.03
ATPAF1-213ENST00000574428 KRT40Q6A162 431 aa27.76■■■□□ 2.03
ATPAF1-213ENST00000574428 HEATR3Q7Z4Q2 680 aa27.76■■■□□ 2.03
ATPAF1-213ENST00000574428 KIFC2Q96AC6 838 aa27.76■■■□□ 2.03
ATPAF1-213ENST00000574428 MTMR8Q96EF0 704 aa27.76■■■□□ 2.03
ATPAF1-213ENST00000574428 WWC2Q6AWC2 1192 aa27.76■■■□□ 2.03
ATPAF1-213ENST00000574428 CHURC1Q8WUH1 139 aa27.76■■■□□ 2.03
ATPAF1-213ENST00000574428 KCNJ14Q9UNX9 436 aa27.76■■■□□ 2.03
ATPAF1-213ENST00000574428 PDIA4P13667 645 aaKnown RBP27.75■■■□□ 2.03
ATPAF1-213ENST00000574428 CDC37Q16543 378 aaPredicted RBP27.75■■■□□ 2.03
ATPAF1-213ENST00000574428 FERMT3Q86UX7 667 aa27.75■■■□□ 2.03
ATPAF1-213ENST00000574428 FAM160B2Q86V87 743 aa27.75■■■□□ 2.03
ATPAF1-213ENST00000574428 ZNF784Q8NCA9 323 aaPredicted RBP27.75■■■□□ 2.03
ATPAF1-213ENST00000574428 KCNH4Q9UQ05 1017 aa27.75■■■□□ 2.03
ATPAF1-213ENST00000574428 A0A0G2JLL6 359 aaPredicted RBP27.74■■■□□ 2.03
ATPAF1-213ENST00000574428 CXCL11O14625 94 aa27.74■■■□□ 2.03
ATPAF1-213ENST00000574428 ZBTB5O15062 677 aa27.74■■■□□ 2.03
ATPAF1-213ENST00000574428 PLA2G6O60733 806 aa27.74■■■□□ 2.03
ATPAF1-213ENST00000574428 HUNKP57058 714 aa27.74■■■□□ 2.03
ATPAF1-213ENST00000574428 PRRT2Q7Z6L0 340 aaPredicted RBP27.74■■■□□ 2.03
ATPAF1-213ENST00000574428 PNMA6FA0A0J9YX94 578 aa27.73■■■□□ 2.03
ATPAF1-213ENST00000574428 PPP1R11O60927 126 aaPredicted RBP27.73■■■□□ 2.03
ATPAF1-213ENST00000574428 TOMM70O94826 608 aa27.73■■■□□ 2.03
ATPAF1-213ENST00000574428 QRICH1Q2TAL8 776 aa27.73■■■□□ 2.03
ATPAF1-213ENST00000574428 LOC285556D6RIA3 1793 aa27.73■■■□□ 2.03
ATPAF1-213ENST00000574428 STXBP3O00186 592 aa27.73■■■□□ 2.03
ATPAF1-213ENST00000574428 FLOT1O75955 427 aa27.73■■■□□ 2.03
ATPAF1-213ENST00000574428 F13A1P00488 732 aa27.73■■■□□ 2.03
ATPAF1-213ENST00000574428 XBP1P17861 261 aa27.73■■■□□ 2.03
ATPAF1-213ENST00000574428 MCTP1Q6DN14 999 aa27.73■■■□□ 2.03
ATPAF1-213ENST00000574428 TYW1BQ6NUM6 668 aa27.73■■■□□ 2.03
ATPAF1-213ENST00000574428 GADL1Q6ZQY3 521 aa27.73■■■□□ 2.03
ATPAF1-213ENST00000574428 TNPO1Q92973 898 aaKnown RBP27.73■■■□□ 2.03
ATPAF1-213ENST00000574428 WNK4Q96J92 1243 aa27.73■■■□□ 2.03
ATPAF1-213ENST00000574428 SLF1Q9BQI6 1058 aa27.73■■■□□ 2.03
ATPAF1-213ENST00000574428 BARHL2Q9NY43 387 aa27.73■■■□□ 2.03
ATPAF1-213ENST00000574428 TREML2Q5T2D2 321 aa27.72■■■□□ 2.03
ATPAF1-213ENST00000574428 MKRN3Q13064 507 aaKnown RBP27.71■■■□□ 2.03
ATPAF1-213ENST00000574428 MMP1P03956 469 aa27.71■■■□□ 2.03
ATPAF1-213ENST00000574428 PHF20Q9BVI0 1012 aa27.71■■■□□ 2.03
ATPAF1-213ENST00000574428 NFKBIBQ15653 356 aa27.7■■■□□ 2.02
ATPAF1-213ENST00000574428 PRPF38AQ8NAV1 312 aaKnown RBP27.7■■■□□ 2.02
ATPAF1-213ENST00000574428 PROCA1Q8NCQ7 364 aaPredicted RBP27.7■■■□□ 2.02
ATPAF1-213ENST00000574428 RGS22Q8NE09 1264 aa27.7■■■□□ 2.02
ATPAF1-213ENST00000574428 COA7Q96BR5 231 aa27.7■■■□□ 2.02
ATPAF1-213ENST00000574428 SH3GLB2Q9NR46 395 aa27.7■■■□□ 2.02
ATPAF1-213ENST00000574428 PARP14Q460N5 1801 aa27.69■■■□□ 2.02
ATPAF1-213ENST00000574428 NAPAP54920 295 aa27.69■■■□□ 2.02
ATPAF1-213ENST00000574428 SNAPC2Q13487 334 aa27.69■■■□□ 2.02
ATPAF1-213ENST00000574428 FOXD4L6Q3SYB3 417 aaPredicted RBP27.69■■■□□ 2.02
ATPAF1-213ENST00000574428 FOXD4L3Q6VB84 417 aaPredicted RBP27.69■■■□□ 2.02
ATPAF1-213ENST00000574428 RANBP17Q9H2T7 1088 aaKnown RBP27.69■■■□□ 2.02
ATPAF1-213ENST00000574428 PPP1R9AQ9ULJ8 1098 aa27.69■■■□□ 2.02
ATPAF1-213ENST00000574428 NLRP5P59047 1200 aa27.68■■■□□ 2.02
ATPAF1-213ENST00000574428 RESTQ13127 1097 aa27.68■■■□□ 2.02
ATPAF1-213ENST00000574428 CCDC174Q6PII3 467 aa27.68■■■□□ 2.02
ATPAF1-213ENST00000574428 CATSPERGQ6ZRH7 1159 aa27.68■■■□□ 2.02
ATPAF1-213ENST00000574428 SAPCD2Q86UD0 394 aa27.68■■■□□ 2.02
ATPAF1-213ENST00000574428 KIF28PB7ZC32 967 aa27.68■■■□□ 2.02
ATPAF1-213ENST00000574428 USP17L15C9J2P7 530 aa27.68■■■□□ 2.02
ATPAF1-213ENST00000574428 USP17L13C9JLJ4 530 aa27.68■■■□□ 2.02
ATPAF1-213ENST00000574428 USP17L11C9JVI0 530 aa27.68■■■□□ 2.02
ATPAF1-213ENST00000574428 USP17L18D6R9N7 530 aa27.68■■■□□ 2.02
ATPAF1-213ENST00000574428 USP17L22D6RA61 530 aa27.68■■■□□ 2.02
ATPAF1-213ENST00000574428 USP17L17D6RBQ6 530 aa27.68■■■□□ 2.02
ATPAF1-213ENST00000574428 USP17L19D6RCP7 530 aa27.68■■■□□ 2.02
ATPAF1-213ENST00000574428 USP17L20D6RJB6 530 aa27.68■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms