RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 RCSD1Q6JBY9 416 aa15.38■□□□□ 0.05
CNOT1-220ENST00000569916 ABRAQ8N0Z2 381 aa15.38■□□□□ 0.05
CNOT1-220ENST00000569916 ESR2Q92731 530 aa15.38■□□□□ 0.05
CNOT1-220ENST00000569916 KIFC2Q96AC6 838 aa15.38■□□□□ 0.05
CNOT1-220ENST00000569916 DEFB118Q96PH6 123 aa15.38■□□□□ 0.05
CNOT1-220ENST00000569916 TEX13BQ9BXU2 312 aa15.38■□□□□ 0.05
CNOT1-220ENST00000569916 SLC38A10Q9HBR0 1119 aa15.38■□□□□ 0.05
CNOT1-220ENST00000569916 HMX1Q9NP08 348 aaPredicted RBP15.38■□□□□ 0.05
CNOT1-220ENST00000569916 CTNNA3Q9UI47 895 aa15.38■□□□□ 0.05
CNOT1-220ENST00000569916 MKI67P46013 3256 aaKnown RBP15.38■□□□□ 0.05
CNOT1-220ENST00000569916 PDE4DIPQ5VU43 2346 aa15.38■□□□□ 0.05
CNOT1-220ENST00000569916 TMEM232C9JQI7 657 aa15.37■□□□□ 0.05
CNOT1-220ENST00000569916 ATP2A1O14983 1001 aa15.37■□□□□ 0.05
CNOT1-220ENST00000569916 COBLO75128 1261 aa15.37■□□□□ 0.05
CNOT1-220ENST00000569916 IGHA2P01877 340 aa15.37■□□□□ 0.05
CNOT1-220ENST00000569916 TOP1P11387 765 aaKnown RBP15.37■□□□□ 0.05
CNOT1-220ENST00000569916 COPB2P35606 906 aa15.37■□□□□ 0.05
CNOT1-220ENST00000569916 NT5C2P49902 561 aa15.37■□□□□ 0.05
CNOT1-220ENST00000569916 STAT2P52630 851 aa15.37■□□□□ 0.05
CNOT1-220ENST00000569916 PTH1RQ03431 593 aa15.37■□□□□ 0.05
CNOT1-220ENST00000569916 SNRNP48Q6IEG0 339 aaKnown RBP15.37■□□□□ 0.05
CNOT1-220ENST00000569916 CHMP4CQ96CF2 233 aa15.37■□□□□ 0.05
CNOT1-220ENST00000569916 TMEM47Q9BQJ4 181 aa15.37■□□□□ 0.05
CNOT1-220ENST00000569916 CRISPLD2Q9H0B8 497 aa15.37■□□□□ 0.05
CNOT1-220ENST00000569916 PLA2G6O60733 806 aa15.36■□□□□ 0.05
CNOT1-220ENST00000569916 ZBED4O75132 1171 aa15.36■□□□□ 0.05
CNOT1-220ENST00000569916 KDM4AO75164 1064 aa15.36■□□□□ 0.05
CNOT1-220ENST00000569916 FCER1AP12319 257 aa15.36■□□□□ 0.05
CNOT1-220ENST00000569916 KCTD1Q719H9 257 aa15.36■□□□□ 0.05
CNOT1-220ENST00000569916 UBE2Q1Q7Z7E8 422 aa15.36■□□□□ 0.05
CNOT1-220ENST00000569916 DPP9Q86TI2 863 aa15.36■□□□□ 0.05
CNOT1-220ENST00000569916 FAM160B2Q86V87 743 aa15.36■□□□□ 0.05
CNOT1-220ENST00000569916 DCAF4Q8WV16 495 aa15.36■□□□□ 0.05
CNOT1-220ENST00000569916 ZKSCAN3Q9BRR0 538 aa15.36■□□□□ 0.05
CNOT1-220ENST00000569916 ISY1Q9ULR0 285 aaKnown RBP15.36■□□□□ 0.05
CNOT1-220ENST00000569916 MTMR7Q9Y216 660 aa15.36■□□□□ 0.05
CNOT1-220ENST00000569916 RIPK3Q9Y572 518 aa15.36■□□□□ 0.05
CNOT1-220ENST00000569916 ALPK3Q96L96 1907 aa15.35■□□□□ 0.05
CNOT1-220ENST00000569916 B4E1Z4 1266 aa15.35■□□□□ 0.05
CNOT1-220ENST00000569916 CCND3P30281 292 aaPredicted RBP15.35■□□□□ 0.05
CNOT1-220ENST00000569916 OAZ1P54368 228 aa15.35■□□□□ 0.05
CNOT1-220ENST00000569916 CCDC96Q2M329 555 aa15.35■□□□□ 0.05
CNOT1-220ENST00000569916 MFSD14CQ5VZR4 134 aa15.35■□□□□ 0.05
CNOT1-220ENST00000569916 OLFML2BQ68BL8 750 aa15.35■□□□□ 0.05
CNOT1-220ENST00000569916 CPXCR1Q8N123 301 aa15.35■□□□□ 0.05
CNOT1-220ENST00000569916 CHURC1Q8WUH1 139 aa15.35■□□□□ 0.05
CNOT1-220ENST00000569916 TTC14Q96N46 770 aa15.35■□□□□ 0.05
CNOT1-220ENST00000569916 MMP19Q99542 508 aa15.35■□□□□ 0.05
CNOT1-220ENST00000569916 RAVER2Q9HCJ3 691 aaKnown RBP15.35■□□□□ 0.05
CNOT1-220ENST00000569916 FARP2O94887 1054 aaPredicted RBP15.34■□□□□ 0.05
CNOT1-220ENST00000569916 FDX1P10109 184 aa15.34■□□□□ 0.05
CNOT1-220ENST00000569916 PDHBP11177 359 aa15.34■□□□□ 0.05
CNOT1-220ENST00000569916 CAPN2P17655 700 aa15.34■□□□□ 0.05
CNOT1-220ENST00000569916 CYP2C19P33261 490 aa15.34■□□□□ 0.05
CNOT1-220ENST00000569916 IKQ13123 557 aaPredicted RBP15.34■□□□□ 0.05
CNOT1-220ENST00000569916 KCTD2Q14681 263 aa15.34■□□□□ 0.05
CNOT1-220ENST00000569916 BMP2KLQ5H9B9 411 aa15.34■□□□□ 0.05
CNOT1-220ENST00000569916 DGKHQ86XP1 1220 aa15.34■□□□□ 0.05
CNOT1-220ENST00000569916 CCDC136Q96JN2 1154 aa15.34■□□□□ 0.05
CNOT1-220ENST00000569916 PRR12Q9ULL5 1215 aa15.34■□□□□ 0.05
CNOT1-220ENST00000569916 CTDP1Q9Y5B0 961 aaPredicted RBP15.34■□□□□ 0.05
CNOT1-220ENST00000569916 LCTP09848 1927 aa15.34■□□□□ 0.05
CNOT1-220ENST00000569916 ZNF536O15090 1300 aa15.34■□□□□ 0.05
CNOT1-220ENST00000569916 SMCHD1A6NHR9 2005 aa15.33■□□□□ 0.04
CNOT1-220ENST00000569916 TFRCP02786 760 aaKnown RBP15.33■□□□□ 0.04
CNOT1-220ENST00000569916 PGK2P07205 417 aa15.33■□□□□ 0.04
CNOT1-220ENST00000569916 CYP21A2P08686 494 aa15.33■□□□□ 0.04
CNOT1-220ENST00000569916 SNHG28P0DPA3 235 aa15.33■□□□□ 0.04
CNOT1-220ENST00000569916 CYBAP13498 195 aa15.33■□□□□ 0.04
CNOT1-220ENST00000569916 TTBK2Q6IQ55 1244 aa15.33■□□□□ 0.04
CNOT1-220ENST00000569916 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.33■□□□□ 0.04
CNOT1-220ENST00000569916 IQCA1Q86XH1 822 aa15.33■□□□□ 0.04
CNOT1-220ENST00000569916 MAML3Q96JK9 1138 aa15.33■□□□□ 0.04
CNOT1-220ENST00000569916 KRT23Q9C075 422 aa15.33■□□□□ 0.04
CNOT1-220ENST00000569916 CNNM2Q9H8M5 875 aa15.33■□□□□ 0.04
CNOT1-220ENST00000569916 SLC5A4Q9NY91 659 aa15.33■□□□□ 0.04
CNOT1-220ENST00000569916 ZSWIM5Q9P217 1185 aa15.33■□□□□ 0.04
CNOT1-220ENST00000569916 U3KPZ7 1027 aaPredicted RBP15.33■□□□□ 0.04
CNOT1-220ENST00000569916 FRMPD2Q68DX3 1309 aaPredicted RBP15.33■□□□□ 0.04
CNOT1-220ENST00000569916 LRRC37A2A6NM11 1700 aa15.32■□□□□ 0.04
CNOT1-220ENST00000569916 SLC4A3P48751 1232 aa15.32■□□□□ 0.04
CNOT1-220ENST00000569916 ZNF792Q3KQV3 632 aa15.32■□□□□ 0.04
CNOT1-220ENST00000569916 CCDC178Q5BJE1 867 aa15.32■□□□□ 0.04
CNOT1-220ENST00000569916 BTNL9Q6UXG8 535 aa15.32■□□□□ 0.04
CNOT1-220ENST00000569916 TRPV1Q8NER1 839 aa15.32■□□□□ 0.04
CNOT1-220ENST00000569916 ANKS1AQ92625 1134 aa15.32■□□□□ 0.04
CNOT1-220ENST00000569916 MAP4K1Q92918 833 aa15.32■□□□□ 0.04
CNOT1-220ENST00000569916 ZSCAN10Q96SZ4 725 aaPredicted RBP15.32■□□□□ 0.04
CNOT1-220ENST00000569916 OGDHLQ9ULD0 1010 aa15.32■□□□□ 0.04
CNOT1-220ENST00000569916 TAF6LQ9Y6J9 622 aa15.32■□□□□ 0.04
CNOT1-220ENST00000569916 TNKSO95271 1327 aa15.32■□□□□ 0.04
CNOT1-220ENST00000569916 MCM3APO60318 1980 aa15.31■□□□□ 0.04
CNOT1-220ENST00000569916 DNAJC25-GNG10A0A024R161 153 aa15.31■□□□□ 0.04
CNOT1-220ENST00000569916 SLC16A2P36021 539 aa15.31■□□□□ 0.04
CNOT1-220ENST00000569916 MNX1P50219 401 aaPredicted RBP15.31■□□□□ 0.04
CNOT1-220ENST00000569916 SNAP25P60880 206 aa15.31■□□□□ 0.04
CNOT1-220ENST00000569916 ZNF543Q08ER8 600 aa15.31■□□□□ 0.04
CNOT1-220ENST00000569916 PRPF38BQ5VTL8 546 aaKnown RBP15.31■□□□□ 0.04
CNOT1-220ENST00000569916 LHX8Q68G74 356 aa15.31■□□□□ 0.04
CNOT1-220ENST00000569916 ENAHQ8N8S7 591 aaPredicted RBP15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms