RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 FBLN1P23142 703 aa7.52□□□□□ -1.21
VPS39-209ENST00000568029 RACK1P63244 317 aaKnown RBP7.52□□□□□ -1.21
VPS39-209ENST00000568029 GSTM4Q03013 218 aa7.52□□□□□ -1.21
VPS39-209ENST00000568029 LMNB2Q03252 620 aa7.52□□□□□ -1.21
VPS39-209ENST00000568029 ZNF394Q53GI3 561 aa7.52□□□□□ -1.21
VPS39-209ENST00000568029 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.52□□□□□ -1.21
VPS39-209ENST00000568029 USHBP1Q8N6Y0 703 aa7.52□□□□□ -1.21
VPS39-209ENST00000568029 GALNT11Q8NCW6 608 aa7.52□□□□□ -1.21
VPS39-209ENST00000568029 EXOC6Q8TAG9 804 aa7.52□□□□□ -1.21
VPS39-209ENST00000568029 SLC7A3Q8WY07 619 aa7.52□□□□□ -1.21
VPS39-209ENST00000568029 ABHD8Q96I13 439 aa7.52□□□□□ -1.21
VPS39-209ENST00000568029 COPRSQ9NQ92 184 aa7.52□□□□□ -1.21
VPS39-209ENST00000568029 KRT82Q9NSB4 513 aa7.52□□□□□ -1.21
VPS39-209ENST00000568029 COL5A3P25940 1745 aaPredicted RBP7.52□□□□□ -1.21
VPS39-209ENST00000568029 CCDC88AQ3V6T2 1871 aa7.51□□□□□ -1.21
VPS39-209ENST00000568029 DIAPH1O60610 1272 aaKnown RBP7.51□□□□□ -1.21
VPS39-209ENST00000568029 NEFMP07197 916 aa7.51□□□□□ -1.21
VPS39-209ENST00000568029 GSTP1P09211 210 aaKnown RBP7.51□□□□□ -1.21
VPS39-209ENST00000568029 ELNP15502 786 aa7.51□□□□□ -1.21
VPS39-209ENST00000568029 GBP2P32456 591 aaPredicted RBP7.51□□□□□ -1.21
VPS39-209ENST00000568029 CD68P34810 354 aaPredicted RBP7.51□□□□□ -1.21
VPS39-209ENST00000568029 ZNF157P51786 506 aaPredicted RBP7.51□□□□□ -1.21
VPS39-209ENST00000568029 LLGL2Q6P1M3 1020 aa7.51□□□□□ -1.21
VPS39-209ENST00000568029 TXNDC11Q6PKC3 985 aa7.51□□□□□ -1.21
VPS39-209ENST00000568029 ALYREFQ86V81 257 aaKnown RBP7.51□□□□□ -1.21
VPS39-209ENST00000568029 TRIM42Q8IWZ5 723 aa7.51□□□□□ -1.21
VPS39-209ENST00000568029 KLHDC7BQ96G42 594 aa7.51□□□□□ -1.21
VPS39-209ENST00000568029 PLVAPQ9BX97 442 aa7.51□□□□□ -1.21
VPS39-209ENST00000568029 MYH16Q9H6N6 1097 aa7.51□□□□□ -1.21
VPS39-209ENST00000568029 TTC21AQ8NDW8 1320 aa7.51□□□□□ -1.21
VPS39-209ENST00000568029 SYNGAP1Q96PV0 1343 aa7.51□□□□□ -1.21
VPS39-209ENST00000568029 U2SURPO15042 1029 aaKnown RBP7.5□□□□□ -1.21
VPS39-209ENST00000568029 TFE3P19532 575 aaPredicted RBP7.5□□□□□ -1.21
VPS39-209ENST00000568029 CDC25BP30305 580 aa7.5□□□□□ -1.21
VPS39-209ENST00000568029 LBX1P52954 281 aa7.5□□□□□ -1.21
VPS39-209ENST00000568029 ITPK1Q13572 414 aa7.5□□□□□ -1.21
VPS39-209ENST00000568029 POU4F3Q15319 338 aa7.5□□□□□ -1.21
VPS39-209ENST00000568029 HGSNATQ68CP4 663 aa7.5□□□□□ -1.21
VPS39-209ENST00000568029 SLC43A3Q8NBI5 491 aa7.5□□□□□ -1.21
VPS39-209ENST00000568029 SPATA32Q96LK8 384 aa7.5□□□□□ -1.21
VPS39-209ENST00000568029 CORO1BQ9BR76 489 aa7.5□□□□□ -1.21
VPS39-209ENST00000568029 KDM6AO15550 1401 aaPredicted RBP7.5□□□□□ -1.21
VPS39-209ENST00000568029 KDM2BQ8NHM5 1336 aa7.5□□□□□ -1.21
VPS39-209ENST00000568029 DLEC1Q9Y238 1755 aa7.49□□□□□ -1.21
VPS39-209ENST00000568029 PLIN1O60240 522 aa7.49□□□□□ -1.21
VPS39-209ENST00000568029 GARTP22102 1010 aa7.49□□□□□ -1.21
VPS39-209ENST00000568029 EIF4A3P38919 411 aaKnown RBP7.49□□□□□ -1.21
VPS39-209ENST00000568029 GJA8P48165 433 aa7.49□□□□□ -1.21
VPS39-209ENST00000568029 TRIM28Q13263 835 aaKnown RBP7.49□□□□□ -1.21
VPS39-209ENST00000568029 CAMK2GQ13555 558 aaPredicted RBP7.49□□□□□ -1.21
VPS39-209ENST00000568029 MAP3K11Q16584 847 aa7.49□□□□□ -1.21
VPS39-209ENST00000568029 PRRT3Q5FWE3 981 aa7.49□□□□□ -1.21
VPS39-209ENST00000568029 MPRIPQ6WCQ1 1025 aa7.49□□□□□ -1.21
VPS39-209ENST00000568029 STK35Q8TDR2 534 aa7.49□□□□□ -1.21
VPS39-209ENST00000568029 SCARF2Q96GP6 870 aaPredicted RBP7.49□□□□□ -1.21
VPS39-209ENST00000568029 COG3Q96JB2 828 aa7.49□□□□□ -1.21
VPS39-209ENST00000568029 DCAF5Q96JK2 942 aa7.49□□□□□ -1.21
VPS39-209ENST00000568029 CRBNQ96SW2 442 aa7.49□□□□□ -1.21
VPS39-209ENST00000568029 MIR1-1HGQ9H1L0 117 aa7.49□□□□□ -1.21
VPS39-209ENST00000568029 PCDHGB7Q9Y5F8 929 aa7.49□□□□□ -1.21
VPS39-209ENST00000568029 EDC4Q6P2E9 1401 aaKnown RBP7.49□□□□□ -1.21
VPS39-209ENST00000568029 LTBP1Q14766 1721 aa7.49□□□□□ -1.21
VPS39-209ENST00000568029 MAPK8IP3Q9UPT6 1336 aa7.49□□□□□ -1.21
VPS39-209ENST00000568029 TCERG1O14776 1098 aaKnown RBP7.48□□□□□ -1.21
VPS39-209ENST00000568029 GREM1O60565 184 aa7.48□□□□□ -1.21
VPS39-209ENST00000568029 PF4P02776 101 aa7.48□□□□□ -1.21
VPS39-209ENST00000568029 CT47B1P0C2W7 299 aaPredicted RBP7.48□□□□□ -1.21
VPS39-209ENST00000568029 MAOBP27338 520 aa7.48□□□□□ -1.21
VPS39-209ENST00000568029 CHRNA5P30532 468 aa7.48□□□□□ -1.21
VPS39-209ENST00000568029 GNL2Q13823 731 aaKnown RBP7.48□□□□□ -1.21
VPS39-209ENST00000568029 FOXD4L6Q3SYB3 417 aaPredicted RBP7.48□□□□□ -1.21
VPS39-209ENST00000568029 RASIP1Q5U651 963 aa7.48□□□□□ -1.21
VPS39-209ENST00000568029 IGF2-ASQ6U949 168 aa7.48□□□□□ -1.21
VPS39-209ENST00000568029 FOXD4L3Q6VB84 417 aaPredicted RBP7.48□□□□□ -1.21
VPS39-209ENST00000568029 KIAA0825Q8IV33 1275 aa7.48□□□□□ -1.21
VPS39-209ENST00000568029 ZCRB1Q8TBF4 217 aaKnown RBP7.48□□□□□ -1.21
VPS39-209ENST00000568029 RASGRP4Q8TDF6 673 aa7.48□□□□□ -1.21
VPS39-209ENST00000568029 TINF2Q9BSI4 451 aa7.48□□□□□ -1.21
VPS39-209ENST00000568029 NT5C1AQ9BXI3 368 aa7.48□□□□□ -1.21
VPS39-209ENST00000568029 LRRC3Q9BY71 257 aa7.48□□□□□ -1.21
VPS39-209ENST00000568029 ADAMTS1Q9UHI8 967 aa7.48□□□□□ -1.21
VPS39-209ENST00000568029 TLR6Q9Y2C9 796 aa7.48□□□□□ -1.21
VPS39-209ENST00000568029 RRP7AQ9Y3A4 280 aaKnown RBP7.48□□□□□ -1.21
VPS39-209ENST00000568029 THSD7BQ9C0I4 1608 aa7.48□□□□□ -1.21
VPS39-209ENST00000568029 ADAMTS7Q9UKP4 1686 aa7.47□□□□□ -1.21
VPS39-209ENST00000568029 CNTNAP1P78357 1384 aa7.47□□□□□ -1.21
VPS39-209ENST00000568029 LOC100289279A0A1B0GTE1 492 aa7.47□□□□□ -1.21
VPS39-209ENST00000568029 MEGF11A6BM72 1044 aa7.47□□□□□ -1.21
VPS39-209ENST00000568029 CCDC85CA6NKD9 419 aa7.47□□□□□ -1.21
VPS39-209ENST00000568029 ADAM11O75078 769 aa7.47□□□□□ -1.21
VPS39-209ENST00000568029 SPATA31C1P0DKV0 1188 aa7.47□□□□□ -1.21
VPS39-209ENST00000568029 HSPA8P11142 646 aaKnown RBP7.47□□□□□ -1.21
VPS39-209ENST00000568029 LMNB1P20700 586 aa7.47□□□□□ -1.21
VPS39-209ENST00000568029 CANXP27824 592 aaKnown RBP7.47□□□□□ -1.21
VPS39-209ENST00000568029 PDE3AQ14432 1141 aa7.47□□□□□ -1.21
VPS39-209ENST00000568029 FLAD1Q8NFF5 587 aa7.47□□□□□ -1.21
VPS39-209ENST00000568029 ZNF296Q8WUU4 475 aaPredicted RBP7.47□□□□□ -1.21
VPS39-209ENST00000568029 GAL3ST3Q96A11 431 aa7.47□□□□□ -1.21
VPS39-209ENST00000568029 SPON2Q9BUD6 331 aa7.47□□□□□ -1.21
VPS39-209ENST00000568029 ACBD3Q9H3P7 528 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms