RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 USP17L11C9JVI0 530 aa20.28■□□□□ 0.84
CLN3-217ENST00000565354 USP17L18D6R9N7 530 aa20.28■□□□□ 0.84
CLN3-217ENST00000565354 USP17L22D6RA61 530 aa20.28■□□□□ 0.84
CLN3-217ENST00000565354 USP17L17D6RBQ6 530 aa20.28■□□□□ 0.84
CLN3-217ENST00000565354 USP17L19D6RCP7 530 aa20.28■□□□□ 0.84
CLN3-217ENST00000565354 USP17L20D6RJB6 530 aa20.28■□□□□ 0.84
CLN3-217ENST00000565354 ERVK-9P63128 1117 aa20.28■□□□□ 0.84
CLN3-217ENST00000565354 ERVK-24P63145 666 aa20.28■□□□□ 0.84
CLN3-217ENST00000565354 USP17L24Q0WX57 530 aa20.28■□□□□ 0.84
CLN3-217ENST00000565354 CCL14Q16627 93 aa20.28■□□□□ 0.84
CLN3-217ENST00000565354 CCDC178Q5BJE1 867 aa20.28■□□□□ 0.84
CLN3-217ENST00000565354 MORN1Q5T089 497 aa20.28■□□□□ 0.84
CLN3-217ENST00000565354 CREB3L3Q68CJ9 461 aa20.28■□□□□ 0.84
CLN3-217ENST00000565354 GPR142Q7Z601 462 aa20.28■□□□□ 0.84
CLN3-217ENST00000565354 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.28■□□□□ 0.84
CLN3-217ENST00000565354 CCAR1Q8IX12 1150 aaKnown RBP20.28■□□□□ 0.84
CLN3-217ENST00000565354 SPICE1Q8N0Z3 855 aa20.28■□□□□ 0.84
CLN3-217ENST00000565354 LRRC47Q8N1G4 583 aaKnown RBP20.28■□□□□ 0.84
CLN3-217ENST00000565354 NCOA7Q8NI08 942 aa20.28■□□□□ 0.84
CLN3-217ENST00000565354 TANGO6Q9C0B7 1094 aa20.28■□□□□ 0.84
CLN3-217ENST00000565354 PORCNQ9H237 461 aa20.28■□□□□ 0.84
CLN3-217ENST00000565354 RPAP3Q9H6T3 665 aaPredicted RBP20.28■□□□□ 0.84
CLN3-217ENST00000565354 ISY1Q9ULR0 285 aaKnown RBP20.28■□□□□ 0.84
CLN3-217ENST00000565354 MYH4Q9Y623 1939 aa20.27■□□□□ 0.84
CLN3-217ENST00000565354 E7EWF7 191 aa20.27■□□□□ 0.84
CLN3-217ENST00000565354 SLC27A2O14975 620 aa20.27■□□□□ 0.84
CLN3-217ENST00000565354 NMT2O60551 498 aa20.27■□□□□ 0.84
CLN3-217ENST00000565354 Q3C1V9 767 aa20.27■□□□□ 0.84
CLN3-217ENST00000565354 PLEKHH3Q7Z736 793 aa20.27■□□□□ 0.84
CLN3-217ENST00000565354 GTF3C2Q8WUA4 911 aaPredicted RBP20.27■□□□□ 0.84
CLN3-217ENST00000565354 GUCD1Q96NT3 240 aa20.27■□□□□ 0.84
CLN3-217ENST00000565354 APBA2Q99767 749 aa20.27■□□□□ 0.84
CLN3-217ENST00000565354 ZKSCAN3Q9BRR0 538 aa20.27■□□□□ 0.84
CLN3-217ENST00000565354 UBAC1Q9BSL1 405 aa20.27■□□□□ 0.84
CLN3-217ENST00000565354 WDR46O15213 610 aaKnown RBP20.26■□□□□ 0.83
CLN3-217ENST00000565354 NECTIN1Q15223 517 aa20.26■□□□□ 0.83
CLN3-217ENST00000565354 PAGR1Q9BTK6 254 aa20.26■□□□□ 0.83
CLN3-217ENST00000565354 IL17RBQ9NRM6 502 aa20.26■□□□□ 0.83
CLN3-217ENST00000565354 TCP11L1Q9NUJ3 509 aa20.26■□□□□ 0.83
CLN3-217ENST00000565354 EYSQ5T1H1 3165 aa20.26■□□□□ 0.83
CLN3-217ENST00000565354 F5H6K3 240 aa20.25■□□□□ 0.83
CLN3-217ENST00000565354 EIF5BO60841 1220 aaKnown RBP20.25■□□□□ 0.83
CLN3-217ENST00000565354 KLRC3Q07444 240 aa20.25■□□□□ 0.83
CLN3-217ENST00000565354 POTEEQ6S8J3 1075 aa20.25■□□□□ 0.83
CLN3-217ENST00000565354 SAMD1Q6SPF0 538 aaPredicted RBP20.25■□□□□ 0.83
CLN3-217ENST00000565354 MKL1Q969V6 931 aa20.25■□□□□ 0.83
CLN3-217ENST00000565354 LBHD1Q9BQE6 289 aaPredicted RBP20.25■□□□□ 0.83
CLN3-217ENST00000565354 SYNPO2Q9UMS6 1093 aa20.25■□□□□ 0.83
CLN3-217ENST00000565354 MTMR7Q9Y216 660 aa20.25■□□□□ 0.83
CLN3-217ENST00000565354 ERICH2A1L162 156 aa20.24■□□□□ 0.83
CLN3-217ENST00000565354 TOP1P11387 765 aaKnown RBP20.24■□□□□ 0.83
CLN3-217ENST00000565354 SLFN13Q68D06 897 aa20.24■□□□□ 0.83
CLN3-217ENST00000565354 CATSPERGQ6ZRH7 1159 aa20.24■□□□□ 0.83
CLN3-217ENST00000565354 TTC14Q96N46 770 aa20.24■□□□□ 0.83
CLN3-217ENST00000565354 ZSWIM5Q9P217 1185 aa20.24■□□□□ 0.83
CLN3-217ENST00000565354 FLOT1O75955 427 aa20.23■□□□□ 0.83
CLN3-217ENST00000565354 NDUFB10O96000 172 aa20.23■□□□□ 0.83
CLN3-217ENST00000565354 MCCP23508 829 aa20.23■□□□□ 0.83
CLN3-217ENST00000565354 MAP2K5Q13163 448 aa20.23■□□□□ 0.83
CLN3-217ENST00000565354 SART3Q15020 963 aaKnown RBP20.23■□□□□ 0.83
CLN3-217ENST00000565354 KIAA1755Q5JYT7 1200 aa20.23■□□□□ 0.83
CLN3-217ENST00000565354 FAM83BQ5T0W9 1011 aa20.23■□□□□ 0.83
CLN3-217ENST00000565354 STOX1Q6ZVD7 989 aa20.23■□□□□ 0.83
CLN3-217ENST00000565354 GMCL1P1Q8NEA9 526 aa20.23■□□□□ 0.83
CLN3-217ENST00000565354 ZSCAN10Q96SZ4 725 aaPredicted RBP20.23■□□□□ 0.83
CLN3-217ENST00000565354 SENP6Q9GZR1 1112 aaPredicted RBP20.23■□□□□ 0.83
CLN3-217ENST00000565354 CWC22Q9HCG8 908 aaKnown RBP20.23■□□□□ 0.83
CLN3-217ENST00000565354 SPTBN5Q9NRC6 3674 aaKnown RBP20.23■□□□□ 0.83
CLN3-217ENST00000565354 TAF6LQ9Y6J9 622 aa20.23■□□□□ 0.83
CLN3-217ENST00000565354 TNKSO95271 1327 aa20.23■□□□□ 0.83
CLN3-217ENST00000565354 LTBP2Q14767 1821 aa20.23■□□□□ 0.83
CLN3-217ENST00000565354 PRUNE2Q8WUY3 3088 aa20.22■□□□□ 0.83
CLN3-217ENST00000565354 DGKHQ86XP1 1220 aa20.22■□□□□ 0.83
CLN3-217ENST00000565354 CHMP4CQ96CF2 233 aa20.22■□□□□ 0.83
CLN3-217ENST00000565354 FAM161BQ96MY7 647 aa20.22■□□□□ 0.83
CLN3-217ENST00000565354 TMEM47Q9BQJ4 181 aa20.22■□□□□ 0.83
CLN3-217ENST00000565354 KAT14Q9H8E8 782 aa20.22■□□□□ 0.83
CLN3-217ENST00000565354 SLC1A4P43007 532 aa20.21■□□□□ 0.83
CLN3-217ENST00000565354 IKQ13123 557 aaPredicted RBP20.21■□□□□ 0.83
CLN3-217ENST00000565354 KRT32Q14532 448 aa20.21■□□□□ 0.83
CLN3-217ENST00000565354 COG2Q14746 738 aa20.21■□□□□ 0.83
CLN3-217ENST00000565354 CCDC96Q2M329 555 aa20.21■□□□□ 0.83
CLN3-217ENST00000565354 MFSD14CQ5VZR4 134 aa20.21■□□□□ 0.83
CLN3-217ENST00000565354 CYB5R4Q7L1T6 521 aa20.21■□□□□ 0.83
CLN3-217ENST00000565354 NUP88Q99567 741 aaPredicted RBP20.21■□□□□ 0.83
CLN3-217ENST00000565354 HOXC10Q9NYD6 342 aa20.21■□□□□ 0.83
CLN3-217ENST00000565354 RABGAP1Q9Y3P9 1069 aa20.21■□□□□ 0.83
CLN3-217ENST00000565354 RLFQ13129 1914 aa20.2■□□□□ 0.82
CLN3-217ENST00000565354 IFIT3O14879 490 aaKnown RBP20.2■□□□□ 0.82
CLN3-217ENST00000565354 EPB41L2O43491 1005 aaKnown RBP20.2■□□□□ 0.82
CLN3-217ENST00000565354 BMP3P12645 472 aa20.2■□□□□ 0.82
CLN3-217ENST00000565354 CCNA1P78396 465 aa20.2■□□□□ 0.82
CLN3-217ENST00000565354 IFIT1BQ5T764 474 aaKnown RBP20.2■□□□□ 0.82
CLN3-217ENST00000565354 ZNF697Q5TEC3 545 aa20.2■□□□□ 0.82
CLN3-217ENST00000565354 FLRT1Q9NZU1 646 aa20.2■□□□□ 0.82
CLN3-217ENST00000565354 DDX20Q9UHI6 824 aaKnown RBP20.2■□□□□ 0.82
CLN3-217ENST00000565354 TTC28Q96AY4 2481 aa20.2■□□□□ 0.82
CLN3-217ENST00000565354 SLC15A5A6NIM6 579 aa20.19■□□□□ 0.82
CLN3-217ENST00000565354 MSCO60682 206 aa20.19■□□□□ 0.82
CLN3-217ENST00000565354 CNMDO75829 334 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms