RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 MCCP23508 829 aa21.74■■□□□ 1.07
CLN3-214ENST00000565140 MNX1P50219 401 aaPredicted RBP21.74■■□□□ 1.07
CLN3-214ENST00000565140 AKNAD1Q5T1N1 836 aa21.74■■□□□ 1.07
CLN3-214ENST00000565140 LHX8Q68G74 356 aa21.74■■□□□ 1.07
CLN3-214ENST00000565140 RASGRP2Q7LDG7 609 aa21.74■■□□□ 1.07
CLN3-214ENST00000565140 GMCL1Q96IK5 515 aa21.74■■□□□ 1.07
CLN3-214ENST00000565140 PAWRQ96IZ0 340 aaKnown RBP21.74■■□□□ 1.07
CLN3-214ENST00000565140 OGDHLQ9ULD0 1010 aa21.74■■□□□ 1.07
CLN3-214ENST00000565140 RIPK3Q9Y572 518 aa21.74■■□□□ 1.07
CLN3-214ENST00000565140 TMEM232C9JQI7 657 aa21.73■■□□□ 1.07
CLN3-214ENST00000565140 PPP4R3BQ5MIZ7 849 aa21.73■■□□□ 1.07
CLN3-214ENST00000565140 OLFML2BQ68BL8 750 aa21.73■■□□□ 1.07
CLN3-214ENST00000565140 SNRNP48Q6IEG0 339 aaKnown RBP21.73■■□□□ 1.07
CLN3-214ENST00000565140 MFSD6Q6ZSS7 791 aa21.73■■□□□ 1.07
CLN3-214ENST00000565140 CPXCR1Q8N123 301 aa21.73■■□□□ 1.07
CLN3-214ENST00000565140 TRPV1Q8NER1 839 aa21.73■■□□□ 1.07
CLN3-214ENST00000565140 STAG1Q8WVM7 1258 aa21.73■■□□□ 1.07
CLN3-214ENST00000565140 DPF3Q92784 378 aa21.73■■□□□ 1.07
CLN3-214ENST00000565140 MMP19Q99542 508 aa21.73■■□□□ 1.07
CLN3-214ENST00000565140 TEX13BQ9BXU2 312 aa21.73■■□□□ 1.07
CLN3-214ENST00000565140 SLC38A10Q9HBR0 1119 aa21.73■■□□□ 1.07
CLN3-214ENST00000565140 ZBED4O75132 1171 aa21.72■■□□□ 1.07
CLN3-214ENST00000565140 PGK2P07205 417 aa21.72■■□□□ 1.07
CLN3-214ENST00000565140 SLC1A4P43007 532 aa21.72■■□□□ 1.07
CLN3-214ENST00000565140 KCTD1Q719H9 257 aa21.72■■□□□ 1.07
CLN3-214ENST00000565140 ANKLE1Q8NAG6 615 aa21.72■■□□□ 1.07
CLN3-214ENST00000565140 RAVER2Q9HCJ3 691 aaKnown RBP21.72■■□□□ 1.07
CLN3-214ENST00000565140 TCP11L1Q9NUJ3 509 aa21.72■■□□□ 1.07
CLN3-214ENST00000565140 DNAH12Q6ZR08 3092 aa21.71■■□□□ 1.07
CLN3-214ENST00000565140 ZNF213O14771 459 aa21.71■■□□□ 1.07
CLN3-214ENST00000565140 ATP2A1O14983 1001 aa21.71■■□□□ 1.07
CLN3-214ENST00000565140 SLC4A3P48751 1232 aa21.71■■□□□ 1.07
CLN3-214ENST00000565140 STAT2P52630 851 aa21.71■■□□□ 1.07
CLN3-214ENST00000565140 RCSD1Q6JBY9 416 aa21.71■■□□□ 1.07
CLN3-214ENST00000565140 MAML3Q96JK9 1138 aa21.71■■□□□ 1.07
CLN3-214ENST00000565140 DSCC1Q9BVC3 393 aa21.71■■□□□ 1.07
CLN3-214ENST00000565140 ISY1Q9ULR0 285 aaKnown RBP21.71■■□□□ 1.07
CLN3-214ENST00000565140 MTMR7Q9Y216 660 aa21.71■■□□□ 1.07
CLN3-214ENST00000565140 H0YGN5 161 aa21.7■■□□□ 1.06
CLN3-214ENST00000565140 PCP11498 1178 aaKnown RBP21.7■■□□□ 1.06
CLN3-214ENST00000565140 COPB2P35606 906 aa21.7■■□□□ 1.06
CLN3-214ENST00000565140 KCTD2Q14681 263 aa21.7■■□□□ 1.06
CLN3-214ENST00000565140 PRAMEF19Q5SWL8 479 aa21.7■■□□□ 1.06
CLN3-214ENST00000565140 NECAB2Q7Z6G3 386 aa21.7■■□□□ 1.06
CLN3-214ENST00000565140 TMEM47Q9BQJ4 181 aa21.7■■□□□ 1.06
CLN3-214ENST00000565140 HTATIP2Q9BUP3 242 aa21.7■■□□□ 1.06
CLN3-214ENST00000565140 SLC5A4Q9NY91 659 aa21.7■■□□□ 1.06
CLN3-214ENST00000565140 CTDP1Q9Y5B0 961 aaPredicted RBP21.7■■□□□ 1.06
CLN3-214ENST00000565140 NEDD4P46934 1319 aa21.7■■□□□ 1.06
CLN3-214ENST00000565140 MCM3APO60318 1980 aa21.7■■□□□ 1.06
CLN3-214ENST00000565140 TOP1P11387 765 aaKnown RBP21.69■■□□□ 1.06
CLN3-214ENST00000565140 CYBAP13498 195 aa21.69■■□□□ 1.06
CLN3-214ENST00000565140 CNGA1P29973 690 aa21.69■■□□□ 1.06
CLN3-214ENST00000565140 ZNF792Q3KQV3 632 aa21.69■■□□□ 1.06
CLN3-214ENST00000565140 CHURC1Q8WUH1 139 aa21.69■■□□□ 1.06
CLN3-214ENST00000565140 RNF41Q9H4P4 317 aaPredicted RBP21.69■■□□□ 1.06
CLN3-214ENST00000565140 PLA2G6O60733 806 aa21.68■■□□□ 1.06
CLN3-214ENST00000565140 CHMLP26374 656 aa21.68■■□□□ 1.06
CLN3-214ENST00000565140 IKQ13123 557 aaPredicted RBP21.68■■□□□ 1.06
CLN3-214ENST00000565140 FAM160B2Q86V87 743 aa21.68■■□□□ 1.06
CLN3-214ENST00000565140 DDX20Q9UHI6 824 aaKnown RBP21.68■■□□□ 1.06
CLN3-214ENST00000565140 ZNF536O15090 1300 aa21.67■■□□□ 1.06
CLN3-214ENST00000565140 OAZ1P54368 228 aa21.67■■□□□ 1.06
CLN3-214ENST00000565140 SNAP25P60880 206 aa21.67■■□□□ 1.06
CLN3-214ENST00000565140 TTBK2Q6IQ55 1244 aa21.67■■□□□ 1.06
CLN3-214ENST00000565140 ZKSCAN3Q9BRR0 538 aa21.67■■□□□ 1.06
CLN3-214ENST00000565140 RANBP2P49792 3224 aaKnown RBP21.66■■□□□ 1.06
CLN3-214ENST00000565140 FDX1P10109 184 aa21.66■■□□□ 1.06
CLN3-214ENST00000565140 DCAF4Q8WV16 495 aa21.66■■□□□ 1.06
CLN3-214ENST00000565140 ESR2Q92731 530 aa21.66■■□□□ 1.06
CLN3-214ENST00000565140 AGBL1Q96MI9 1066 aa21.66■■□□□ 1.06
CLN3-214ENST00000565140 TTC14Q96N46 770 aa21.66■■□□□ 1.06
CLN3-214ENST00000565140 CTNNA3Q9UI47 895 aa21.66■■□□□ 1.06
CLN3-214ENST00000565140 PRR12Q9ULL5 1215 aa21.66■■□□□ 1.06
CLN3-214ENST00000565140 DIS3Q9Y2L1 958 aaKnown RBP21.66■■□□□ 1.06
CLN3-214ENST00000565140 TRIOBPQ9H2D6 2365 aa21.65■■□□□ 1.06
CLN3-214ENST00000565140 DNAJC25-GNG10A0A024R161 153 aa21.65■■□□□ 1.06
CLN3-214ENST00000565140 KDM4AO75164 1064 aa21.65■■□□□ 1.06
CLN3-214ENST00000565140 IMMTQ16891 758 aaKnown RBP21.65■■□□□ 1.06
CLN3-214ENST00000565140 CCDC96Q2M329 555 aa21.65■■□□□ 1.06
CLN3-214ENST00000565140 DDX11Q96FC9 970 aa21.65■■□□□ 1.06
CLN3-214ENST00000565140 TINF2Q9BSI4 451 aa21.65■■□□□ 1.06
CLN3-214ENST00000565140 C11orf49Q9H6J7 331 aa21.65■■□□□ 1.06
CLN3-214ENST00000565140 PFASO15067 1338 aa21.64■■□□□ 1.05
CLN3-214ENST00000565140 FRMPD2Q68DX3 1309 aaPredicted RBP21.64■■□□□ 1.05
CLN3-214ENST00000565140 B4E1Z4 1266 aa21.64■■□□□ 1.05
CLN3-214ENST00000565140 COL6A1P12109 1028 aa21.64■■□□□ 1.05
CLN3-214ENST00000565140 SLC16A2P36021 539 aa21.64■■□□□ 1.05
CLN3-214ENST00000565140 PTH1RQ03431 593 aa21.64■■□□□ 1.05
CLN3-214ENST00000565140 ANO1Q5XXA6 986 aa21.64■■□□□ 1.05
CLN3-214ENST00000565140 CCDC174Q6PII3 467 aa21.64■■□□□ 1.05
CLN3-214ENST00000565140 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.64■■□□□ 1.05
CLN3-214ENST00000565140 SKAP1Q86WV1 359 aa21.64■■□□□ 1.05
CLN3-214ENST00000565140 CHST13Q8NET6 341 aa21.64■■□□□ 1.05
CLN3-214ENST00000565140 GPCPD1Q9NPB8 672 aa21.64■■□□□ 1.05
CLN3-214ENST00000565140 HOMER2Q9NSB8 354 aa21.64■■□□□ 1.05
CLN3-214ENST00000565140 ZSWIM5Q9P217 1185 aa21.64■■□□□ 1.05
CLN3-214ENST00000565140 RAD50Q92878 1312 aa21.63■■□□□ 1.05
CLN3-214ENST00000565140 SEPT4O43236 478 aa21.63■■□□□ 1.05
CLN3-214ENST00000565140 EVI5O60447 810 aa21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms