RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 RIOX1Q9H6W3 641 aa19.27■□□□□ 0.68
VPS4A-202ENST00000562754 FEM1BQ9UK73 627 aa19.27■□□□□ 0.68
VPS4A-202ENST00000562754 THSD7BQ9C0I4 1608 aa19.26■□□□□ 0.67
VPS4A-202ENST00000562754 COL11A1P12107 1806 aaPredicted RBP19.26■□□□□ 0.67
VPS4A-202ENST00000562754 TESPA1A2RU30 521 aaPredicted RBP19.26■□□□□ 0.67
VPS4A-202ENST00000562754 USP17L15C9J2P7 530 aa19.26■□□□□ 0.67
VPS4A-202ENST00000562754 BTBD19C9JJ37 291 aa19.26■□□□□ 0.67
VPS4A-202ENST00000562754 USP17L13C9JLJ4 530 aa19.26■□□□□ 0.67
VPS4A-202ENST00000562754 USP17L11C9JVI0 530 aa19.26■□□□□ 0.67
VPS4A-202ENST00000562754 USP17L18D6R9N7 530 aa19.26■□□□□ 0.67
VPS4A-202ENST00000562754 USP17L22D6RA61 530 aa19.26■□□□□ 0.67
VPS4A-202ENST00000562754 USP17L17D6RBQ6 530 aa19.26■□□□□ 0.67
VPS4A-202ENST00000562754 USP17L19D6RCP7 530 aa19.26■□□□□ 0.67
VPS4A-202ENST00000562754 USP17L20D6RJB6 530 aa19.26■□□□□ 0.67
VPS4A-202ENST00000562754 FLOT1O75955 427 aa19.26■□□□□ 0.67
VPS4A-202ENST00000562754 USP17L24Q0WX57 530 aa19.26■□□□□ 0.67
VPS4A-202ENST00000562754 IKQ13123 557 aaPredicted RBP19.26■□□□□ 0.67
VPS4A-202ENST00000562754 DEFB115Q30KQ5 88 aa19.26■□□□□ 0.67
VPS4A-202ENST00000562754 CATSPERGQ6ZRH7 1159 aa19.26■□□□□ 0.67
VPS4A-202ENST00000562754 FAM160B2Q86V87 743 aa19.26■□□□□ 0.67
VPS4A-202ENST00000562754 ADGRF4Q8IZF3 695 aa19.26■□□□□ 0.67
VPS4A-202ENST00000562754 CAPNS2Q96L46 248 aa19.26■□□□□ 0.67
VPS4A-202ENST00000562754 SLF1Q9BQI6 1058 aa19.26■□□□□ 0.67
VPS4A-202ENST00000562754 LLPHQ9BRT6 129 aaKnown RBP19.26■□□□□ 0.67
VPS4A-202ENST00000562754 FOXD4L1Q9NU39 408 aa19.26■□□□□ 0.67
VPS4A-202ENST00000562754 PRR12Q9ULL5 1215 aa19.26■□□□□ 0.67
VPS4A-202ENST00000562754 hCG_1642624A0A1W2PR95 340 aa19.25■□□□□ 0.67
VPS4A-202ENST00000562754 MANSC4A6NHS7 340 aaPredicted RBP19.25■□□□□ 0.67
VPS4A-202ENST00000562754 CDKL5O76039 1030 aa19.25■□□□□ 0.67
VPS4A-202ENST00000562754 FMNL1O95466 1100 aaPredicted RBP19.25■□□□□ 0.67
VPS4A-202ENST00000562754 SMARCA1P28370 1054 aa19.25■□□□□ 0.67
VPS4A-202ENST00000562754 HOXA7P31268 230 aaPredicted RBP19.25■□□□□ 0.67
VPS4A-202ENST00000562754 GRM1Q13255 1194 aa19.25■□□□□ 0.67
VPS4A-202ENST00000562754 CPLX2Q6PUV4 134 aaKnown RBP19.25■□□□□ 0.67
VPS4A-202ENST00000562754 CHURC1Q8WUH1 139 aa19.25■□□□□ 0.67
VPS4A-202ENST00000562754 KIFC2Q96AC6 838 aa19.25■□□□□ 0.67
VPS4A-202ENST00000562754 MTMR8Q96EF0 704 aa19.25■□□□□ 0.67
VPS4A-202ENST00000562754 PTPN18Q99952 460 aa19.25■□□□□ 0.67
VPS4A-202ENST00000562754 JMJD4Q9H9V9 463 aa19.25■□□□□ 0.67
VPS4A-202ENST00000562754 PPP1R9AQ9ULJ8 1098 aa19.25■□□□□ 0.67
VPS4A-202ENST00000562754 STK36Q9NRP7 1315 aa19.25■□□□□ 0.67
VPS4A-202ENST00000562754 FDPSP14324 419 aaKnown RBP19.24■□□□□ 0.67
VPS4A-202ENST00000562754 SNAP25P60880 206 aa19.24■□□□□ 0.67
VPS4A-202ENST00000562754 SAMD1Q6SPF0 538 aaPredicted RBP19.24■□□□□ 0.67
VPS4A-202ENST00000562754 ANKRD23Q86SG2 305 aa19.24■□□□□ 0.67
VPS4A-202ENST00000562754 FAM43AQ8N2R8 423 aa19.24■□□□□ 0.67
VPS4A-202ENST00000562754 PIBF1Q8WXW3 757 aa19.24■□□□□ 0.67
VPS4A-202ENST00000562754 ATG4CQ96DT6 458 aa19.24■□□□□ 0.67
VPS4A-202ENST00000562754 DDX11Q96FC9 970 aa19.24■□□□□ 0.67
VPS4A-202ENST00000562754 INTS4Q96HW7 963 aaKnown RBP19.24■□□□□ 0.67
VPS4A-202ENST00000562754 SLC26A6Q9BXS9 759 aa19.24■□□□□ 0.67
VPS4A-202ENST00000562754 RNF26Q9BY78 433 aaPredicted RBP19.24■□□□□ 0.67
VPS4A-202ENST00000562754 VAT1LQ9HCJ6 419 aa19.24■□□□□ 0.67
VPS4A-202ENST00000562754 SPDYE16A6NNV3 312 aaPredicted RBP19.23■□□□□ 0.67
VPS4A-202ENST00000562754 IGF2BP3O00425 579 aaKnown RBP eCLIP19.23■□□□□ 0.67
VPS4A-202ENST00000562754 PRPF3O43395 683 aaKnown RBP19.23■□□□□ 0.67
VPS4A-202ENST00000562754 AOC2O75106 756 aa19.23■□□□□ 0.67
VPS4A-202ENST00000562754 DSG3P32926 999 aa19.23■□□□□ 0.67
VPS4A-202ENST00000562754 C1QTNF8P60827 252 aa19.23■□□□□ 0.67
VPS4A-202ENST00000562754 SSRP1Q08945 709 aaKnown RBP19.23■□□□□ 0.67
VPS4A-202ENST00000562754 SPRYD3Q8NCJ5 442 aa19.23■□□□□ 0.67
VPS4A-202ENST00000562754 PIGSQ96S52 555 aa19.23■□□□□ 0.67
VPS4A-202ENST00000562754 ASCC2Q9H1I8 757 aaPredicted RBP19.23■□□□□ 0.67
VPS4A-202ENST00000562754 ORC3Q9UBD5 711 aaPredicted RBP19.23■□□□□ 0.67
VPS4A-202ENST00000562754 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.23■□□□□ 0.67
VPS4A-202ENST00000562754 V9GY48 417 aaPredicted RBP19.23■□□□□ 0.67
VPS4A-202ENST00000562754 MYPNQ86TC9 1320 aa19.23■□□□□ 0.67
VPS4A-202ENST00000562754 IRX3P78415 501 aaPredicted RBP19.22■□□□□ 0.67
VPS4A-202ENST00000562754 KIF23Q02241 960 aaPredicted RBP19.22■□□□□ 0.67
VPS4A-202ENST00000562754 NOGQ13253 232 aa19.22■□□□□ 0.67
VPS4A-202ENST00000562754 COG2Q14746 738 aa19.22■□□□□ 0.67
VPS4A-202ENST00000562754 PKN1Q16512 942 aa19.22■□□□□ 0.67
VPS4A-202ENST00000562754 CDC37Q16543 378 aaPredicted RBP19.22■□□□□ 0.67
VPS4A-202ENST00000562754 POTEEQ6S8J3 1075 aa19.22■□□□□ 0.67
VPS4A-202ENST00000562754 HOMER1Q86YM7 354 aa19.22■□□□□ 0.67
VPS4A-202ENST00000562754 PRPF38AQ8NAV1 312 aaKnown RBP19.22■□□□□ 0.67
VPS4A-202ENST00000562754 RANBP17Q9H2T7 1088 aaKnown RBP19.22■□□□□ 0.67
VPS4A-202ENST00000562754 SLC45A1Q9Y2W3 748 aa19.22■□□□□ 0.67
VPS4A-202ENST00000562754 SMCHD1A6NHR9 2005 aa19.21■□□□□ 0.67
VPS4A-202ENST00000562754 PDHXO00330 501 aa19.21■□□□□ 0.67
VPS4A-202ENST00000562754 PPP1R11O60927 126 aaPredicted RBP19.21■□□□□ 0.67
VPS4A-202ENST00000562754 HSPA6P17066 643 aa19.21■□□□□ 0.67
VPS4A-202ENST00000562754 GJB2P29033 226 aa19.21■□□□□ 0.67
VPS4A-202ENST00000562754 PABPC4Q13310 644 aaKnown RBP eCLIP19.21■□□□□ 0.678e-8■□□□□ 10.9
VPS4A-202ENST00000562754 QRICH1Q2TAL8 776 aa19.21■□□□□ 0.67
VPS4A-202ENST00000562754 TRIM22Q8IYM9 498 aa19.21■□□□□ 0.67
VPS4A-202ENST00000562754 REPS2Q8NFH8 660 aa19.21■□□□□ 0.67
VPS4A-202ENST00000562754 RRP36Q96EU6 259 aaKnown RBP19.21■□□□□ 0.67
VPS4A-202ENST00000562754 AIFM3Q96NN9 605 aa19.21■□□□□ 0.67
VPS4A-202ENST00000562754 P2RX7Q99572 595 aaKnown RBP19.21■□□□□ 0.67
VPS4A-202ENST00000562754 ADAMTS5Q9UNA0 930 aa19.21■□□□□ 0.67
VPS4A-202ENST00000562754 SMC3Q9UQE7 1217 aa19.21■□□□□ 0.67
VPS4A-202ENST00000562754 VWA5AO00534 786 aa19.2■□□□□ 0.66
VPS4A-202ENST00000562754 HSP90AA1P07900 732 aaKnown RBP19.2■□□□□ 0.66
VPS4A-202ENST00000562754 TAL1P17542 331 aaPredicted RBP19.2■□□□□ 0.66
VPS4A-202ENST00000562754 VEGFBP49765 207 aa19.2■□□□□ 0.66
VPS4A-202ENST00000562754 HMGN5P82970 282 aaKnown RBP19.2■□□□□ 0.66
VPS4A-202ENST00000562754 SREBF2Q12772 1141 aa19.2■□□□□ 0.66
VPS4A-202ENST00000562754 IFNL1Q8IU54 200 aa19.2■□□□□ 0.66
VPS4A-202ENST00000562754 IPO9Q96P70 1041 aaKnown RBP19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 100.9 ms