RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 GRXCR1A8MXD5 290 aa21.48■■□□□ 1.03
TSPAN3-208ENST00000560514 TLR3O15455 904 aaKnown RBP21.48■■□□□ 1.03
TSPAN3-208ENST00000560514 C6orf222P0C671 652 aaPredicted RBP21.48■■□□□ 1.03
TSPAN3-208ENST00000560514 PBX2P40425 430 aa21.48■■□□□ 1.03
TSPAN3-208ENST00000560514 CCDC85BQ15834 202 aaPredicted RBP21.48■■□□□ 1.03
TSPAN3-208ENST00000560514 TMEM240Q5SV17 173 aa21.48■■□□□ 1.03
TSPAN3-208ENST00000560514 LCORLQ8N3X6 602 aa21.48■■□□□ 1.03
TSPAN3-208ENST00000560514 KLHDC9Q8NEP7 349 aa21.48■■□□□ 1.03
TSPAN3-208ENST00000560514 TSPYL2Q9H2G4 693 aaPredicted RBP21.48■■□□□ 1.03
TSPAN3-208ENST00000560514 SYNGAP1Q96PV0 1343 aa21.48■■□□□ 1.03
TSPAN3-208ENST00000560514 DUSP11O75319 330 aaKnown RBP21.47■■□□□ 1.03
TSPAN3-208ENST00000560514 EEF2P13639 858 aaKnown RBP21.47■■□□□ 1.03
TSPAN3-208ENST00000560514 CSF2RAP15509 400 aa21.47■■□□□ 1.03
TSPAN3-208ENST00000560514 ITPRIPQ8IWB1 547 aa21.47■■□□□ 1.03
TSPAN3-208ENST00000560514 FAM122AQ96E09 287 aa21.47■■□□□ 1.03
TSPAN3-208ENST00000560514 DNAJC2Q99543 621 aaKnown RBP21.47■■□□□ 1.03
TSPAN3-208ENST00000560514 KANSL2Q9H9L4 492 aa21.47■■□□□ 1.03
TSPAN3-208ENST00000560514 ATP8A2Q9NTI2 1148 aa21.47■■□□□ 1.03
TSPAN3-208ENST00000560514 RAPGEFL1Q9UHV5 662 aa21.47■■□□□ 1.03
TSPAN3-208ENST00000560514 ZNF214Q9UL59 606 aaPredicted RBP21.47■■□□□ 1.03
TSPAN3-208ENST00000560514 CTDP1Q9Y5B0 961 aaPredicted RBP21.47■■□□□ 1.03
TSPAN3-208ENST00000560514 BAZ2AQ9UIF9 1905 aaKnown RBP21.47■■□□□ 1.03
TSPAN3-208ENST00000560514 CDK8P49336 464 aa21.46■■□□□ 1.03
TSPAN3-208ENST00000560514 ZNF365Q70YC5 407 aa21.46■■□□□ 1.03
TSPAN3-208ENST00000560514 PPP1R12CQ9BZL4 782 aa21.46■■□□□ 1.03
TSPAN3-208ENST00000560514 ARMT1Q9H993 441 aa21.46■■□□□ 1.03
TSPAN3-208ENST00000560514 EXOC6BQ9Y2D4 811 aa21.46■■□□□ 1.03
TSPAN3-208ENST00000560514 A0A0U1RQG5 324 aaPredicted RBP21.45■■□□□ 1.02
TSPAN3-208ENST00000560514 GOLIM4O00461 696 aa21.45■■□□□ 1.02
TSPAN3-208ENST00000560514 ASGR1P07306 291 aa21.45■■□□□ 1.02
TSPAN3-208ENST00000560514 ACRP10323 421 aa21.45■■□□□ 1.02
TSPAN3-208ENST00000560514 SLC4A3P48751 1232 aa21.45■■□□□ 1.02
TSPAN3-208ENST00000560514 HSP90AB4PQ58FF6 505 aa21.45■■□□□ 1.02
TSPAN3-208ENST00000560514 FAM83BQ5T0W9 1011 aa21.45■■□□□ 1.02
TSPAN3-208ENST00000560514 SNRNP48Q6IEG0 339 aaKnown RBP21.45■■□□□ 1.02
TSPAN3-208ENST00000560514 TEX13BQ9BXU2 312 aa21.45■■□□□ 1.02
TSPAN3-208ENST00000560514 SLC28A3Q9HAS3 691 aa21.45■■□□□ 1.02
TSPAN3-208ENST00000560514 ARVCFO00192 962 aa21.44■■□□□ 1.02
TSPAN3-208ENST00000560514 SNAI1O95863 264 aaPredicted RBP21.44■■□□□ 1.02
TSPAN3-208ENST00000560514 CST5P28325 142 aaPredicted RBP21.44■■□□□ 1.02
TSPAN3-208ENST00000560514 PLA2G5P39877 138 aa21.44■■□□□ 1.02
TSPAN3-208ENST00000560514 CCSAPQ6IQ19 270 aaPredicted RBP21.44■■□□□ 1.02
TSPAN3-208ENST00000560514 C16orf59Q7L2K0 433 aa21.44■■□□□ 1.02
TSPAN3-208ENST00000560514 IL1RAPL2Q9NP60 686 aa21.44■■□□□ 1.02
TSPAN3-208ENST00000560514 NCOR1O75376 2440 aa21.44■■□□□ 1.02
TSPAN3-208ENST00000560514 MYADML2A6NDP7 307 aa21.43■■□□□ 1.02
TSPAN3-208ENST00000560514 CDK7P50613 346 aa21.43■■□□□ 1.02
TSPAN3-208ENST00000560514 ACVR2BQ13705 512 aa21.43■■□□□ 1.02
TSPAN3-208ENST00000560514 GNASQ5JWF2 1037 aa21.43■■□□□ 1.02
TSPAN3-208ENST00000560514 RASIP1Q5U651 963 aa21.43■■□□□ 1.02
TSPAN3-208ENST00000560514 MAMDC4Q6UXC1 1216 aa21.43■■□□□ 1.02
TSPAN3-208ENST00000560514 SLF1Q9BQI6 1058 aa21.43■■□□□ 1.02
TSPAN3-208ENST00000560514 TCRBV5S4A2TA0A5A2 114 aa21.42■■□□□ 1.02
TSPAN3-208ENST00000560514 PRKAB2O43741 272 aa21.42■■□□□ 1.02
TSPAN3-208ENST00000560514 MBD4O95243 580 aa21.42■■□□□ 1.02
TSPAN3-208ENST00000560514 C12orf60Q5U649 245 aa21.42■■□□□ 1.02
TSPAN3-208ENST00000560514 C16orf86Q6ZW13 317 aa21.42■■□□□ 1.02
TSPAN3-208ENST00000560514 ZNF467Q7Z7K2 595 aaPredicted RBP21.42■■□□□ 1.02
TSPAN3-208ENST00000560514 CLASRPQ8N2M8 674 aaKnown RBP21.42■■□□□ 1.02
TSPAN3-208ENST00000560514 REPS2Q8NFH8 660 aa21.42■■□□□ 1.02
TSPAN3-208ENST00000560514 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.42■■□□□ 1.02
TSPAN3-208ENST00000560514 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.42■■□□□ 1.02
TSPAN3-208ENST00000560514 BCL11AQ9H165 835 aa21.42■■□□□ 1.02
TSPAN3-208ENST00000560514 ABHD16BQ9H3Z7 469 aa21.42■■□□□ 1.02
TSPAN3-208ENST00000560514 IL23AQ9NPF7 189 aa21.42■■□□□ 1.02
TSPAN3-208ENST00000560514 USP17L12C9JPN9 530 aa21.41■■□□□ 1.02
TSPAN3-208ENST00000560514 USP17L21D6R901 530 aa21.41■■□□□ 1.02
TSPAN3-208ENST00000560514 FGBP02675 491 aa21.41■■□□□ 1.02
TSPAN3-208ENST00000560514 IFIT2P09913 472 aaKnown RBP21.41■■□□□ 1.02
TSPAN3-208ENST00000560514 ADGRE1Q14246 886 aa21.41■■□□□ 1.02
TSPAN3-208ENST00000560514 CCDC144BQ3MJ40 725 aa21.41■■□□□ 1.02
TSPAN3-208ENST00000560514 CEP85Q6P2H3 762 aa21.41■■□□□ 1.02
TSPAN3-208ENST00000560514 FAM126BQ8IXS8 530 aa21.41■■□□□ 1.02
TSPAN3-208ENST00000560514 CPXCR1Q8N123 301 aa21.41■■□□□ 1.02
TSPAN3-208ENST00000560514 HERVK_113Q902F9 699 aa21.41■■□□□ 1.02
TSPAN3-208ENST00000560514 NKX2-4Q9H2Z4 354 aa21.41■■□□□ 1.02
TSPAN3-208ENST00000560514 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.41■■□□□ 1.02
TSPAN3-208ENST00000560514 MCM3APO60318 1980 aa21.4■■□□□ 1.02
TSPAN3-208ENST00000560514 CYP2D7A0A087X1C5 515 aa21.4■■□□□ 1.02
TSPAN3-208ENST00000560514 ZBED4O75132 1171 aa21.4■■□□□ 1.02
TSPAN3-208ENST00000560514 CYP2C18P33260 490 aa21.4■■□□□ 1.02
TSPAN3-208ENST00000560514 GJA9P57773 515 aa21.4■■□□□ 1.02
TSPAN3-208ENST00000560514 ANKRD35Q8N283 1001 aa21.4■■□□□ 1.02
TSPAN3-208ENST00000560514 MICALL1Q8N3F8 863 aa21.4■■□□□ 1.02
TSPAN3-208ENST00000560514 RHPN1Q8TCX5 695 aa21.4■■□□□ 1.02
TSPAN3-208ENST00000560514 GBF1Q92538 1859 aa21.39■■□□□ 1.02
TSPAN3-208ENST00000560514 DNAJC25-GNG10A0A024R161 153 aa21.39■■□□□ 1.01
TSPAN3-208ENST00000560514 AAK1Q2M2I8 961 aa21.39■■□□□ 1.01
TSPAN3-208ENST00000560514 NOL8Q76FK4 1167 aaKnown RBP21.39■■□□□ 1.01
TSPAN3-208ENST00000560514 PRPF38AQ8NAV1 312 aaKnown RBP21.39■■□□□ 1.01
TSPAN3-208ENST00000560514 C1QTNF1Q9BXJ1 281 aa21.39■■□□□ 1.01
TSPAN3-208ENST00000560514 UPF3AQ9H1J1 476 aaKnown RBP21.39■■□□□ 1.01
TSPAN3-208ENST00000560514 RIPK3Q9Y572 518 aa21.39■■□□□ 1.01
TSPAN3-208ENST00000560514 TCF20Q9UGU0 1960 aaKnown RBP21.39■■□□□ 1.01
TSPAN3-208ENST00000560514 IRX5P78411 483 aaPredicted RBP21.38■■□□□ 1.01
TSPAN3-208ENST00000560514 NUP88Q99567 741 aaPredicted RBP21.38■■□□□ 1.01
TSPAN3-208ENST00000560514 HIPK3Q9H422 1215 aa21.38■■□□□ 1.01
TSPAN3-208ENST00000560514 PAG1Q9NWQ8 432 aa21.38■■□□□ 1.01
TSPAN3-208ENST00000560514 FBXO40Q9UH90 709 aa21.38■■□□□ 1.01
TSPAN3-208ENST00000560514 SLC4A4Q9Y6R1 1079 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms