RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 C9orf50Q5SZB4 431 aa10.95□□□□□ -0.66
HDDC3-204ENST00000559834 SNRNP48Q6IEG0 339 aaKnown RBP10.95□□□□□ -0.66
HDDC3-204ENST00000559834 MAMDC4Q6UXC1 1216 aa10.95□□□□□ -0.66
HDDC3-204ENST00000559834 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.95□□□□□ -0.66
HDDC3-204ENST00000559834 CPXCR1Q8N123 301 aa10.95□□□□□ -0.66
HDDC3-204ENST00000559834 STK11IPQ8N1F8 1099 aa10.95□□□□□ -0.66
HDDC3-204ENST00000559834 MKL1Q969V6 931 aa10.95□□□□□ -0.66
HDDC3-204ENST00000559834 NACAP1Q9BZK3 213 aa10.95□□□□□ -0.66
HDDC3-204ENST00000559834 SPC25Q9HBM1 224 aa10.95□□□□□ -0.66
HDDC3-204ENST00000559834 TMEM39AQ9NV64 488 aa10.95□□□□□ -0.66
HDDC3-204ENST00000559834 FBXO40Q9UH90 709 aa10.95□□□□□ -0.66
HDDC3-204ENST00000559834 FEM1BQ9UK73 627 aa10.95□□□□□ -0.66
HDDC3-204ENST00000559834 SYNPO2Q9UMS6 1093 aa10.95□□□□□ -0.66
HDDC3-204ENST00000559834 RLFQ13129 1914 aa10.95□□□□□ -0.66
HDDC3-204ENST00000559834 SMCHD1A6NHR9 2005 aa10.94□□□□□ -0.66
HDDC3-204ENST00000559834 ZNFX1Q9P2E3 1918 aaKnown RBP10.94□□□□□ -0.66
HDDC3-204ENST00000559834 FRMPD3Q5JV73 1810 aa10.94□□□□□ -0.66
HDDC3-204ENST00000559834 A0A1W2PQ45 241 aaPredicted RBP10.94□□□□□ -0.66
HDDC3-204ENST00000559834 A0A1W2PQY0 241 aa10.94□□□□□ -0.66
HDDC3-204ENST00000559834 MOXD2PA6NHM9 499 aa10.94□□□□□ -0.66
HDDC3-204ENST00000559834 PQBP1O60828 265 aaKnown RBP10.94□□□□□ -0.66
HDDC3-204ENST00000559834 DUSP11O75319 330 aaKnown RBP10.94□□□□□ -0.66
HDDC3-204ENST00000559834 NDUFB10O96000 172 aa10.94□□□□□ -0.66
HDDC3-204ENST00000559834 SLC3A2P08195 630 aaKnown RBP10.94□□□□□ -0.66
HDDC3-204ENST00000559834 FDX1P10109 184 aa10.94□□□□□ -0.66
HDDC3-204ENST00000559834 ACLYP53396 1101 aa10.94□□□□□ -0.66
HDDC3-204ENST00000559834 ZNF467Q7Z7K2 595 aaPredicted RBP10.94□□□□□ -0.66
HDDC3-204ENST00000559834 ANKRD35Q8N283 1001 aa10.94□□□□□ -0.66
HDDC3-204ENST00000559834 PCSK9Q8NBP7 692 aaKnown RBP10.94□□□□□ -0.66
HDDC3-204ENST00000559834 CHST13Q8NET6 341 aa10.94□□□□□ -0.66
HDDC3-204ENST00000559834 OSBP2Q969R2 916 aa10.94□□□□□ -0.66
HDDC3-204ENST00000559834 KIFC2Q96AC6 838 aa10.94□□□□□ -0.66
HDDC3-204ENST00000559834 NUP88Q99567 741 aaPredicted RBP10.94□□□□□ -0.66
HDDC3-204ENST00000559834 CDX2Q99626 313 aaPredicted RBP10.94□□□□□ -0.66
HDDC3-204ENST00000559834 DCTPP1Q9H773 170 aa10.94□□□□□ -0.66
HDDC3-204ENST00000559834 STARD7Q9NQZ5 370 aa10.94□□□□□ -0.66
HDDC3-204ENST00000559834 ZHX1Q9UKY1 873 aaPredicted RBP10.94□□□□□ -0.66
HDDC3-204ENST00000559834 BAZ2AQ9UIF9 1905 aaKnown RBP10.94□□□□□ -0.66
HDDC3-204ENST00000559834 ROBO3Q96MS0 1386 aa10.93□□□□□ -0.66
HDDC3-204ENST00000559834 ELP1O95163 1332 aa10.93□□□□□ -0.66
HDDC3-204ENST00000559834 DNAJC25-GNG10A0A024R161 153 aa10.93□□□□□ -0.66
HDDC3-204ENST00000559834 TMEM265A0A087WTH1 108 aa10.93□□□□□ -0.66
HDDC3-204ENST00000559834 ADAMTS4O75173 837 aa10.93□□□□□ -0.66
HDDC3-204ENST00000559834 SNAI1O95863 264 aaPredicted RBP10.93□□□□□ -0.66
HDDC3-204ENST00000559834 TTLL1O95922 423 aa10.93□□□□□ -0.66
HDDC3-204ENST00000559834 OAZ1P54368 228 aa10.93□□□□□ -0.66
HDDC3-204ENST00000559834 FPGSQ05932 587 aa10.93□□□□□ -0.66
HDDC3-204ENST00000559834 PDE4BQ07343 736 aa10.93□□□□□ -0.66
HDDC3-204ENST00000559834 ACVR2BQ13705 512 aa10.93□□□□□ -0.66
HDDC3-204ENST00000559834 KCNA10Q16322 511 aa10.93□□□□□ -0.66
HDDC3-204ENST00000559834 PPP4R3BQ5MIZ7 849 aa10.93□□□□□ -0.66
HDDC3-204ENST00000559834 ANKRD33Q7Z3H0 272 aa10.93□□□□□ -0.66
HDDC3-204ENST00000559834 KLHDC9Q8NEP7 349 aa10.93□□□□□ -0.66
HDDC3-204ENST00000559834 VTI1AQ96AJ9 217 aa10.93□□□□□ -0.66
HDDC3-204ENST00000559834 RNPC3Q96LT9 517 aaKnown RBP10.93□□□□□ -0.66
HDDC3-204ENST00000559834 GLT1D1Q96MS3 346 aa10.93□□□□□ -0.66
HDDC3-204ENST00000559834 ABHD16BQ9H3Z7 469 aa10.93□□□□□ -0.66
HDDC3-204ENST00000559834 RAVER2Q9HCJ3 691 aaKnown RBP10.93□□□□□ -0.66
HDDC3-204ENST00000559834 MTMR4Q9NYA4 1195 aa10.93□□□□□ -0.66
HDDC3-204ENST00000559834 RIPK3Q9Y572 518 aa10.93□□□□□ -0.66
HDDC3-204ENST00000559834 MYH8P13535 1937 aa10.93□□□□□ -0.66
HDDC3-204ENST00000559834 A0A0G2JMZ2 1700 aa10.92□□□□□ -0.66
HDDC3-204ENST00000559834 MROH7Q68CQ1 1323 aa10.92□□□□□ -0.66
HDDC3-204ENST00000559834 IGKV6D-41A0A0C4DH26 115 aa10.92□□□□□ -0.66
HDDC3-204ENST00000559834 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.92□□□□□ -0.66
HDDC3-204ENST00000559834 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.92□□□□□ -0.66
HDDC3-204ENST00000559834 ERC2O15083 957 aa10.92□□□□□ -0.66
HDDC3-204ENST00000559834 GPAA1O43292 621 aa10.92□□□□□ -0.66
HDDC3-204ENST00000559834 TSPY3P0CV98 308 aa10.92□□□□□ -0.66
HDDC3-204ENST00000559834 TSPY8P0CW00 308 aa10.92□□□□□ -0.66
HDDC3-204ENST00000559834 FAAP100Q0VG06 881 aa10.92□□□□□ -0.66
HDDC3-204ENST00000559834 CCDC174Q6PII3 467 aa10.92□□□□□ -0.66
HDDC3-204ENST00000559834 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.92□□□□□ -0.66
HDDC3-204ENST00000559834 IFNL3Q8IZI9 196 aa10.92□□□□□ -0.66
HDDC3-204ENST00000559834 GMCL1P1Q8NEA9 526 aa10.92□□□□□ -0.66
HDDC3-204ENST00000559834 CHURC1Q8WUH1 139 aa10.92□□□□□ -0.66
HDDC3-204ENST00000559834 CEP95Q96GE4 821 aa10.92□□□□□ -0.66
HDDC3-204ENST00000559834 SLC38A10Q9HBR0 1119 aa10.92□□□□□ -0.66
HDDC3-204ENST00000559834 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.92□□□□□ -0.66
HDDC3-204ENST00000559834 SYNRGQ9UMZ2 1314 aa10.91□□□□□ -0.66
HDDC3-204ENST00000559834 PRDM1O75626 825 aa10.91□□□□□ -0.66
HDDC3-204ENST00000559834 TIMP1P01033 207 aa10.91□□□□□ -0.66
HDDC3-204ENST00000559834 C6orf222P0C671 652 aaPredicted RBP10.91□□□□□ -0.66
HDDC3-204ENST00000559834 BMP3P12645 472 aa10.91□□□□□ -0.66
HDDC3-204ENST00000559834 ITGB8P26012 769 aa10.91□□□□□ -0.66
HDDC3-204ENST00000559834 CST5P28325 142 aaPredicted RBP10.91□□□□□ -0.66
HDDC3-204ENST00000559834 GNASQ5JWF2 1037 aa10.91□□□□□ -0.66
HDDC3-204ENST00000559834 C20orf194Q5TEA3 1177 aa10.91□□□□□ -0.66
HDDC3-204ENST00000559834 SLFN13Q68D06 897 aa10.91□□□□□ -0.66
HDDC3-204ENST00000559834 CCSAPQ6IQ19 270 aaPredicted RBP10.91□□□□□ -0.66
HDDC3-204ENST00000559834 FAM160B2Q86V87 743 aa10.91□□□□□ -0.66
HDDC3-204ENST00000559834 NEDD1Q8NHV4 660 aa10.91□□□□□ -0.66
HDDC3-204ENST00000559834 MAFAQ8NHW3 353 aaPredicted RBP10.91□□□□□ -0.66
HDDC3-204ENST00000559834 COL25A1Q9BXS0 654 aaPredicted RBP10.91□□□□□ -0.66
HDDC3-204ENST00000559834 ISY1Q9ULR0 285 aaKnown RBP10.91□□□□□ -0.66
HDDC3-204ENST00000559834 TTC41PQ6P2S7 1318 aa10.9□□□□□ -0.66
HDDC3-204ENST00000559834 TMEM232C9JQI7 657 aa10.9□□□□□ -0.66
HDDC3-204ENST00000559834 TLR3O15455 904 aaKnown RBP10.9□□□□□ -0.66
HDDC3-204ENST00000559834 FOSL2P15408 326 aa10.9□□□□□ -0.66
HDDC3-204ENST00000559834 SLC1A4P43007 532 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms