RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 COL9A2Q14055 689 aaPredicted RBP2.47□□□□□ -2.01
USP3-209ENST00000558925 RASA3Q14644 834 aa2.47□□□□□ -2.01
USP3-209ENST00000558925 CWF19L2Q2TBE0 894 aaKnown RBP2.47□□□□□ -2.01
USP3-209ENST00000558925 WIPI1Q5MNZ9 446 aaPredicted RBP2.47□□□□□ -2.01
USP3-209ENST00000558925 ZNF746Q6NUN9 644 aaPredicted RBP2.47□□□□□ -2.01
USP3-209ENST00000558925 LRFN4Q6PJG9 635 aa2.47□□□□□ -2.01
USP3-209ENST00000558925 THAP5Q7Z6K1 395 aa2.47□□□□□ -2.01
USP3-209ENST00000558925 NOP9Q86U38 636 aaKnown RBP2.47□□□□□ -2.01
USP3-209ENST00000558925 C12orf40Q86WS4 652 aa2.47□□□□□ -2.01
USP3-209ENST00000558925 SLC16A11Q8NCK7 471 aa2.47□□□□□ -2.01
USP3-209ENST00000558925 PLPPR2Q96GM1 343 aa2.47□□□□□ -2.01
USP3-209ENST00000558925 INTS4Q96HW7 963 aaKnown RBP2.47□□□□□ -2.01
USP3-209ENST00000558925 TEPSINQ96N21 525 aa2.47□□□□□ -2.01
USP3-209ENST00000558925 KANSL2Q9H9L4 492 aa2.47□□□□□ -2.01
USP3-209ENST00000558925 FBRSQ9HAH7 460 aa2.47□□□□□ -2.01
USP3-209ENST00000558925 ST7Q9NRC1 585 aa2.47□□□□□ -2.01
USP3-209ENST00000558925 SNTG2Q9NY99 539 aa2.47□□□□□ -2.01
USP3-209ENST00000558925 ZSWIM5Q9P217 1185 aa2.47□□□□□ -2.01
USP3-209ENST00000558925 PRKAG3Q9UGI9 489 aa2.47□□□□□ -2.01
USP3-209ENST00000558925 EBF1Q9UH73 591 aa2.47□□□□□ -2.01
USP3-209ENST00000558925 ZNRF3Q9ULT6 936 aa2.47□□□□□ -2.01
USP3-209ENST00000558925 PCDHA4Q9UN74 947 aa2.47□□□□□ -2.01
USP3-209ENST00000558925 CYP8B1Q9UNU6 501 aa2.47□□□□□ -2.01
USP3-209ENST00000558925 MYRFQ9Y2G1 1151 aa2.47□□□□□ -2.01
USP3-209ENST00000558925 PCDHB14Q9Y5E9 798 aa2.47□□□□□ -2.01
USP3-209ENST00000558925 CADPSQ9ULU8 1353 aa2.47□□□□□ -2.01
USP3-209ENST00000558925 FAM86C2PA6NEL3 165 aa2.46□□□□□ -2.02
USP3-209ENST00000558925 MATN3O15232 486 aa2.46□□□□□ -2.02
USP3-209ENST00000558925 TRIM37O94972 964 aa2.46□□□□□ -2.02
USP3-209ENST00000558925 BPNT1O95861 308 aa2.46□□□□□ -2.02
USP3-209ENST00000558925 ZGLP1P0C6A0 271 aa2.46□□□□□ -2.02
USP3-209ENST00000558925 GIPRP48546 466 aa2.46□□□□□ -2.02
USP3-209ENST00000558925 RPL6Q02878 288 aaKnown RBP2.46□□□□□ -2.02
USP3-209ENST00000558925 PLP2Q04941 152 aa2.46□□□□□ -2.02
USP3-209ENST00000558925 TNK2Q07912 1038 aa2.46□□□□□ -2.02
USP3-209ENST00000558925 RAB33AQ14088 237 aa2.46□□□□□ -2.02
USP3-209ENST00000558925 SLBPQ14493 270 aaKnown RBP eCLIP2.46□□□□□ -2.02
USP3-209ENST00000558925 RTP5Q14D33 572 aa2.46□□□□□ -2.02
USP3-209ENST00000558925 LRRC14Q15048 493 aa2.46□□□□□ -2.02
USP3-209ENST00000558925 TCEAL1Q15170 157 aa2.46□□□□□ -2.02
USP3-209ENST00000558925 SFRP5Q5T4F7 317 aa2.46□□□□□ -2.02
USP3-209ENST00000558925 ZBTB37Q5TC79 503 aa2.46□□□□□ -2.02
USP3-209ENST00000558925 SDE2Q6IQ49 451 aa2.46□□□□□ -2.02
USP3-209ENST00000558925 CCDC84Q86UT8 332 aaPredicted RBP2.46□□□□□ -2.02
USP3-209ENST00000558925 TP53I13Q8NBR0 393 aaPredicted RBP2.46□□□□□ -2.02
USP3-209ENST00000558925 SHISA4Q96DD7 197 aa2.46□□□□□ -2.02
USP3-209ENST00000558925 ACSBG1Q96GR2 724 aa2.46□□□□□ -2.02
USP3-209ENST00000558925 CCDC120Q96HB5 630 aa2.46□□□□□ -2.02
USP3-209ENST00000558925 SRPK1Q96SB4 655 aaKnown RBP2.46□□□□□ -2.02
USP3-209ENST00000558925 EMILIN2Q9BXX0 1053 aa2.46□□□□□ -2.02
USP3-209ENST00000558925 TRIM55Q9BYV6 548 aa2.46□□□□□ -2.02
USP3-209ENST00000558925 SCAND2PQ9GZW5 306 aaPredicted RBP2.46□□□□□ -2.02
USP3-209ENST00000558925 MBD1Q9UIS9 605 aaPredicted RBP2.46□□□□□ -2.02
USP3-209ENST00000558925 STRIP2Q9ULQ0 834 aa2.46□□□□□ -2.02
USP3-209ENST00000558925 TMA7Q9Y2S6 64 aaKnown RBP2.46□□□□□ -2.02
USP3-209ENST00000558925 SAMM50Q9Y512 469 aa2.46□□□□□ -2.02
USP3-209ENST00000558925 TLDC2A0PJX2 215 aa2.45□□□□□ -2.02
USP3-209ENST00000558925 PRAMEF27A3QJZ7 478 aa2.45□□□□□ -2.02
USP3-209ENST00000558925 UPK3BL1B0FP48 263 aa2.45□□□□□ -2.02
USP3-209ENST00000558925 UPK3BL2E5RIL1 263 aa2.45□□□□□ -2.02
USP3-209ENST00000558925 RFXAPO00287 272 aa2.45□□□□□ -2.02
USP3-209ENST00000558925 GFRA2O00451 464 aa2.45□□□□□ -2.02
USP3-209ENST00000558925 LRIG2O94898 1065 aa2.45□□□□□ -2.02
USP3-209ENST00000558925 HTR3BO95264 441 aa2.45□□□□□ -2.02
USP3-209ENST00000558925 CBX7O95931 251 aa2.45□□□□□ -2.02
USP3-209ENST00000558925 ZNF165P49910 485 aa2.45□□□□□ -2.02
USP3-209ENST00000558925 ZYXQ15942 572 aaKnown RBP2.45□□□□□ -2.02
USP3-209ENST00000558925 PPP2R5EQ16537 467 aa2.45□□□□□ -2.02
USP3-209ENST00000558925 NKG7Q16617 165 aa2.45□□□□□ -2.02
USP3-209ENST00000558925 DDR2Q16832 855 aa2.45□□□□□ -2.02
USP3-209ENST00000558925 NBPF6Q5VWK0 638 aa2.45□□□□□ -2.02
USP3-209ENST00000558925 LARP1BQ659C4 914 aaKnown RBP2.45□□□□□ -2.02
USP3-209ENST00000558925 OVOS1Q6IE37 1185 aa2.45□□□□□ -2.02
USP3-209ENST00000558925 MRM1Q6IN84 353 aaKnown RBP2.45□□□□□ -2.02
USP3-209ENST00000558925 TMEM151BQ8IW70 566 aa2.45□□□□□ -2.02
USP3-209ENST00000558925 TMEFF1Q8IYR6 380 aa2.45□□□□□ -2.02
USP3-209ENST00000558925 REXO1Q8N1G1 1221 aaKnown RBP2.45□□□□□ -2.02
USP3-209ENST00000558925 MRFAP1L1Q96HT8 127 aa2.45□□□□□ -2.02
USP3-209ENST00000558925 NBPF4Q96M43 638 aa2.45□□□□□ -2.02
USP3-209ENST00000558925 DEPDC7Q96QD5 511 aa2.45□□□□□ -2.02
USP3-209ENST00000558925 MIPEPQ99797 713 aa2.45□□□□□ -2.02
USP3-209ENST00000558925 SLC6A17Q9H1V8 727 aa2.45□□□□□ -2.02
USP3-209ENST00000558925 ACTR10Q9NZ32 417 aa2.45□□□□□ -2.02
USP3-209ENST00000558925 REV1Q9UBZ9 1251 aa2.45□□□□□ -2.02
USP3-209ENST00000558925 TPX2Q9ULW0 747 aaKnown RBP2.45□□□□□ -2.02
USP3-209ENST00000558925 WDR3Q9UNX4 943 aaKnown RBP eCLIP2.45□□□□□ -2.02
USP3-209ENST00000558925 YBX2Q9Y2T7 364 aaKnown RBP2.45□□□□□ -2.02
USP3-209ENST00000558925 ROBO2Q9HCK4 1378 aa2.45□□□□□ -2.02
USP3-209ENST00000558925 A0A1W2PQH9 124 aa2.44□□□□□ -2.02
USP3-209ENST00000558925 ZC3H12DA2A288 527 aaKnown RBP2.44□□□□□ -2.02
USP3-209ENST00000558925 ANKRD62A6NC57 917 aa2.44□□□□□ -2.02
USP3-209ENST00000558925 NOTOA8MTQ0 251 aa2.44□□□□□ -2.02
USP3-209ENST00000558925 IRS4O14654 1257 aaPredicted RBP2.44□□□□□ -2.02
USP3-209ENST00000558925 ATE1O95260 518 aa2.44□□□□□ -2.02
USP3-209ENST00000558925 GJB6O95452 261 aa2.44□□□□□ -2.02
USP3-209ENST00000558925 FSHBP01225 129 aa2.44□□□□□ -2.02
USP3-209ENST00000558925 SLPIP03973 132 aa2.44□□□□□ -2.02
USP3-209ENST00000558925 ACRP10323 421 aa2.44□□□□□ -2.02
USP3-209ENST00000558925 PLCG1P19174 1290 aa2.44□□□□□ -2.02
USP3-209ENST00000558925 POLR2BP30876 1174 aaKnown RBP2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms