RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 TMEM63CQ9P1W3 806 aa6.17□□□□□ -1.42
LDLR-209ENST00000558528 NIP7Q9Y221 180 aaKnown RBP eCLIP6.17□□□□□ -1.42
LDLR-209ENST00000558528 AKAP2Q9Y2D5 859 aa6.17□□□□□ -1.42
LDLR-209ENST00000558528 KCNMB2Q9Y691 235 aa6.17□□□□□ -1.42
LDLR-209ENST00000558528 SH3TC1Q8TE82 1336 aa6.17□□□□□ -1.42
LDLR-209ENST00000558528 LY75O60449 1722 aa6.16□□□□□ -1.42
LDLR-209ENST00000558528 SIPA1L3O60292 1781 aaPredicted RBP6.16□□□□□ -1.42
LDLR-209ENST00000558528 PNMA6EA0A0J9YXQ4 647 aa6.16□□□□□ -1.42
LDLR-209ENST00000558528 ANKRD18BA2A2Z9 1011 aa6.16□□□□□ -1.42
LDLR-209ENST00000558528 IRS4O14654 1257 aaPredicted RBP6.16□□□□□ -1.42
LDLR-209ENST00000558528 ERC2O15083 957 aa6.16□□□□□ -1.42
LDLR-209ENST00000558528 SIAH2O43255 324 aa6.16□□□□□ -1.42
LDLR-209ENST00000558528 CIAO1O76071 339 aa6.16□□□□□ -1.42
LDLR-209ENST00000558528 MAP4K4O95819 1239 aaPredicted RBP6.16□□□□□ -1.42
LDLR-209ENST00000558528 CSF1RP07333 972 aa6.16□□□□□ -1.42
LDLR-209ENST00000558528 CES1P23141 567 aa6.16□□□□□ -1.42
LDLR-209ENST00000558528 IL15P40933 162 aaPredicted RBP6.16□□□□□ -1.42
LDLR-209ENST00000558528 PLA2G4AP47712 749 aa6.16□□□□□ -1.42
LDLR-209ENST00000558528 CASP7P55210 303 aa6.16□□□□□ -1.42
LDLR-209ENST00000558528 IFIT5Q13325 482 aaKnown RBP6.16□□□□□ -1.42
LDLR-209ENST00000558528 TRIP4Q15650 581 aaPredicted RBP6.16□□□□□ -1.42
LDLR-209ENST00000558528 HLFQ16534 295 aa6.16□□□□□ -1.42
LDLR-209ENST00000558528 FXNQ16595 210 aa6.16□□□□□ -1.42
LDLR-209ENST00000558528 CCDC152Q4G0S7 254 aa6.16□□□□□ -1.42
LDLR-209ENST00000558528 TTC39BQ5VTQ0 682 aaPredicted RBP6.16□□□□□ -1.42
LDLR-209ENST00000558528 CCSAPQ6IQ19 270 aaPredicted RBP6.16□□□□□ -1.42
LDLR-209ENST00000558528 LMBR1LQ6UX01 489 aa6.16□□□□□ -1.42
LDLR-209ENST00000558528 DTHD1Q6ZMT9 781 aa6.16□□□□□ -1.42
LDLR-209ENST00000558528 BTLAQ7Z6A9 289 aa6.16□□□□□ -1.42
LDLR-209ENST00000558528 TICAM2Q86XR7 235 aa6.16□□□□□ -1.42
LDLR-209ENST00000558528 LILRB2Q8N423 598 aa6.16□□□□□ -1.42
LDLR-209ENST00000558528 GLIS3Q8NEA6 775 aa6.16□□□□□ -1.42
LDLR-209ENST00000558528 C8orf48Q96LL4 319 aa6.16□□□□□ -1.42
LDLR-209ENST00000558528 OXCT2Q9BYC2 517 aaPredicted RBP6.16□□□□□ -1.42
LDLR-209ENST00000558528 BICC1Q9H694 974 aaKnown RBP6.16□□□□□ -1.42
LDLR-209ENST00000558528 TCEAL9Q9UHQ7 104 aa6.16□□□□□ -1.42
LDLR-209ENST00000558528 G3BP2Q9UN86 482 aaKnown RBP6.16□□□□□ -1.42
LDLR-209ENST00000558528 MAPK8IP1Q9UQF2 711 aa6.16□□□□□ -1.42
LDLR-209ENST00000558528 AOX1Q06278 1338 aa6.16□□□□□ -1.42
LDLR-209ENST00000558528 HMGB1P1B2RPK0 211 aaPredicted RBP6.15□□□□□ -1.42
LDLR-209ENST00000558528 EREGO14944 169 aa6.15□□□□□ -1.42
LDLR-209ENST00000558528 NPHP1O15259 732 aa6.15□□□□□ -1.42
LDLR-209ENST00000558528 PRC1O43663 620 aa6.15□□□□□ -1.42
LDLR-209ENST00000558528 POLR3DP05423 398 aaPredicted RBP6.15□□□□□ -1.42
LDLR-209ENST00000558528 NR3C2P08235 984 aa6.15□□□□□ -1.42
LDLR-209ENST00000558528 IFIT2P09913 472 aaKnown RBP6.15□□□□□ -1.42
LDLR-209ENST00000558528 GARTP22102 1010 aa6.15□□□□□ -1.42
LDLR-209ENST00000558528 GIPRP48546 466 aa6.15□□□□□ -1.42
LDLR-209ENST00000558528 FCGRTP55899 365 aa6.15□□□□□ -1.42
LDLR-209ENST00000558528 KCNQ4P56696 695 aa6.15□□□□□ -1.42
LDLR-209ENST00000558528 TBX4P57082 545 aa6.15□□□□□ -1.42
LDLR-209ENST00000558528 MAP3K10Q02779 954 aa6.15□□□□□ -1.42
LDLR-209ENST00000558528 CAMK2GQ13555 558 aaPredicted RBP6.15□□□□□ -1.42
LDLR-209ENST00000558528 BMP2KLQ5H9B9 411 aa6.15□□□□□ -1.42
LDLR-209ENST00000558528 SLC10A5Q5PT55 438 aa6.15□□□□□ -1.42
LDLR-209ENST00000558528 ARHGAP27Q6ZUM4 889 aa6.15□□□□□ -1.42
LDLR-209ENST00000558528 FMNL3Q8IVF7 1028 aa6.15□□□□□ -1.42
LDLR-209ENST00000558528 KDF1Q8NAX2 398 aaPredicted RBP6.15□□□□□ -1.42
LDLR-209ENST00000558528 GOLM1Q8NBJ4 401 aa6.15□□□□□ -1.42
LDLR-209ENST00000558528 C7orf43Q8WVR3 580 aa6.15□□□□□ -1.42
LDLR-209ENST00000558528 FAM89AQ96GI7 184 aa6.15□□□□□ -1.42
LDLR-209ENST00000558528 CDC5LQ99459 802 aaKnown RBP6.15□□□□□ -1.42
LDLR-209ENST00000558528 GPR108Q9NPR9 543 aa6.15□□□□□ -1.42
LDLR-209ENST00000558528 TTC41PQ6P2S7 1318 aa6.15□□□□□ -1.43
LDLR-209ENST00000558528 KIF13BQ9NQT8 1826 aa6.15□□□□□ -1.43
LDLR-209ENST00000558528 TMEM238LA0A1B0GVL6 79 aa6.14□□□□□ -1.43
LDLR-209ENST00000558528 A0A1W2PP55 124 aa6.14□□□□□ -1.43
LDLR-209ENST00000558528 RNF223E7ERA6 249 aa6.14□□□□□ -1.43
LDLR-209ENST00000558528 EYA2O00167 538 aa6.14□□□□□ -1.43
LDLR-209ENST00000558528 DLL1O00548 723 aa6.14□□□□□ -1.43
LDLR-209ENST00000558528 XYLBO75191 536 aa6.14□□□□□ -1.43
LDLR-209ENST00000558528 PEX14O75381 377 aa6.14□□□□□ -1.43
LDLR-209ENST00000558528 GLRX3O76003 335 aaKnown RBP6.14□□□□□ -1.43
LDLR-209ENST00000558528 PF4P02776 101 aa6.14□□□□□ -1.43
LDLR-209ENST00000558528 GPTP24298 496 aa6.14□□□□□ -1.43
LDLR-209ENST00000558528 IGHMBP2P38935 993 aaKnown RBP6.14□□□□□ -1.43
LDLR-209ENST00000558528 ZNF165P49910 485 aa6.14□□□□□ -1.43
LDLR-209ENST00000558528 CTSWP56202 376 aa6.14□□□□□ -1.43
LDLR-209ENST00000558528 FOXO4P98177 505 aa6.14□□□□□ -1.43
LDLR-209ENST00000558528 EXOSC10Q01780 885 aaKnown RBP6.14□□□□□ -1.43
LDLR-209ENST00000558528 SF3B3Q15393 1217 aaKnown RBP6.14□□□□□ -1.43
LDLR-209ENST00000558528 CTC1Q2NKJ3 1217 aa6.14□□□□□ -1.43
LDLR-209ENST00000558528 LRRFIP1Q32MZ4 808 aaKnown RBP6.14□□□□□ -1.43
LDLR-209ENST00000558528 MTERF2Q49AM1 385 aa6.14□□□□□ -1.43
LDLR-209ENST00000558528 SUSD4Q5VX71 490 aa6.14□□□□□ -1.43
LDLR-209ENST00000558528 BICDL1Q6ZP65 573 aa6.14□□□□□ -1.43
LDLR-209ENST00000558528 NBPF5PQ86XG9 351 aaPredicted RBP6.14□□□□□ -1.43
LDLR-209ENST00000558528 C1orf127Q8N9H9 656 aa6.14□□□□□ -1.43
LDLR-209ENST00000558528 TTLL11Q8NHH1 800 aa6.14□□□□□ -1.43
LDLR-209ENST00000558528 KCTD12Q96CX2 325 aaKnown RBP6.14□□□□□ -1.43
LDLR-209ENST00000558528 FERD3LQ96RJ6 166 aa6.14□□□□□ -1.43
LDLR-209ENST00000558528 UBP1Q9NZI7 540 aa6.14□□□□□ -1.43
LDLR-209ENST00000558528 STAP2Q9UGK3 403 aa6.14□□□□□ -1.43
LDLR-209ENST00000558528 EXOC6BQ9Y2D4 811 aa6.14□□□□□ -1.43
LDLR-209ENST00000558528 USP42Q9H9J4 1324 aaKnown RBP6.14□□□□□ -1.43
LDLR-209ENST00000558528 ZNF831Q5JPB2 1677 aa6.14□□□□□ -1.43
LDLR-209ENST00000558528 SZT2Q5T011 3432 aa6.13□□□□□ -1.43
LDLR-209ENST00000558528 UBR2Q8IWV8 1755 aa6.13□□□□□ -1.43
LDLR-209ENST00000558528 BRCA1P38398 1863 aaKnown RBP6.13□□□□□ -1.43
LDLR-209ENST00000558528 CACNA1FO60840 1977 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms