RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 VAT1LQ9HCJ6 419 aa19.49■□□□□ 0.71
SNX1-203ENST00000558040 EMILIN3Q9NT22 766 aa19.49■□□□□ 0.71
SNX1-203ENST00000558040 hCG_1642624A0A1W2PR95 340 aa19.48■□□□□ 0.71
SNX1-203ENST00000558040 hCG_1984214I3L0E3 225 aa19.48■□□□□ 0.71
SNX1-203ENST00000558040 BRD1O95696 1058 aa19.48■□□□□ 0.71
SNX1-203ENST00000558040 YY1P25490 414 aa19.48■□□□□ 0.71
SNX1-203ENST00000558040 FOSBP53539 338 aa19.48■□□□□ 0.71
SNX1-203ENST00000558040 SLC35G1Q2M3R5 365 aa19.48■□□□□ 0.71
SNX1-203ENST00000558040 HOMER1Q86YM7 354 aa19.48■□□□□ 0.71
SNX1-203ENST00000558040 FAM177A1Q8N128 213 aaPredicted RBP19.48■□□□□ 0.71
SNX1-203ENST00000558040 ZNF713Q8N859 430 aaPredicted RBP19.48■□□□□ 0.71
SNX1-203ENST00000558040 FBXO18Q8NFZ0 1043 aa19.48■□□□□ 0.71
SNX1-203ENST00000558040 PIBF1Q8WXW3 757 aa19.48■□□□□ 0.71
SNX1-203ENST00000558040 JMJD4Q9H9V9 463 aa19.48■□□□□ 0.71
SNX1-203ENST00000558040 MTMR6Q9Y217 621 aa19.48■□□□□ 0.71
SNX1-203ENST00000558040 PNMA6FA0A0J9YX94 578 aa19.47■□□□□ 0.71
SNX1-203ENST00000558040 TOMM70O94826 608 aa19.47■□□□□ 0.71
SNX1-203ENST00000558040 ZSCAN22P10073 491 aaPredicted RBP19.47■□□□□ 0.71
SNX1-203ENST00000558040 PKP1Q13835 747 aa19.47■□□□□ 0.71
SNX1-203ENST00000558040 CNKSR2Q8WXI2 1034 aa19.47■□□□□ 0.71
SNX1-203ENST00000558040 MTMR8Q96EF0 704 aa19.47■□□□□ 0.71
SNX1-203ENST00000558040 AIFM3Q96NN9 605 aa19.47■□□□□ 0.71
SNX1-203ENST00000558040 PIGSQ96S52 555 aa19.47■□□□□ 0.71
SNX1-203ENST00000558040 TANGO6Q9C0B7 1094 aa19.47■□□□□ 0.71
SNX1-203ENST00000558040 RPAP3Q9H6T3 665 aaPredicted RBP19.47■□□□□ 0.71
SNX1-203ENST00000558040 SH3GLB2Q9NR46 395 aa19.47■□□□□ 0.71
SNX1-203ENST00000558040 KCNH4Q9UQ05 1017 aa19.47■□□□□ 0.71
SNX1-203ENST00000558040 PASKQ96RG2 1323 aa19.47■□□□□ 0.71
SNX1-203ENST00000558040 IRF6O14896 467 aa19.46■□□□□ 0.71
SNX1-203ENST00000558040 ZBTB5O15062 677 aa19.46■□□□□ 0.71
SNX1-203ENST00000558040 SAFBQ15424 915 aaKnown RBP eCLIP19.46■□□□□ 0.71
SNX1-203ENST00000558040 CST9Q5W186 159 aa19.46■□□□□ 0.71
SNX1-203ENST00000558040 KRT40Q6A162 431 aa19.46■□□□□ 0.71
SNX1-203ENST00000558040 HEATR3Q7Z4Q2 680 aa19.46■□□□□ 0.71
SNX1-203ENST00000558040 PROCA1Q8NCQ7 364 aaPredicted RBP19.46■□□□□ 0.71
SNX1-203ENST00000558040 CCDC148Q8NFR7 591 aa19.46■□□□□ 0.71
SNX1-203ENST00000558040 CCDC12Q8WUD4 166 aaPredicted RBP19.46■□□□□ 0.71
SNX1-203ENST00000558040 PRR12Q9ULL5 1215 aa19.46■□□□□ 0.71
SNX1-203ENST00000558040 A0A0G2JLL6 359 aaPredicted RBP19.45■□□□□ 0.7
SNX1-203ENST00000558040 TRAF1Q13077 416 aa19.45■□□□□ 0.7
SNX1-203ENST00000558040 CDC37Q16543 378 aaPredicted RBP19.45■□□□□ 0.7
SNX1-203ENST00000558040 PRRT2Q7Z6L0 340 aaPredicted RBP19.45■□□□□ 0.7
SNX1-203ENST00000558040 PRPF38AQ8NAV1 312 aaKnown RBP19.45■□□□□ 0.7
SNX1-203ENST00000558040 KIFC2Q96AC6 838 aa19.45■□□□□ 0.7
SNX1-203ENST00000558040 SLF1Q9BQI6 1058 aa19.45■□□□□ 0.7
SNX1-203ENST00000558040 ATP6V1DQ9Y5K8 247 aa19.45■□□□□ 0.7
SNX1-203ENST00000558040 FLOT1O75955 427 aa19.44■□□□□ 0.7
SNX1-203ENST00000558040 F13A1P00488 732 aa19.44■□□□□ 0.7
SNX1-203ENST00000558040 HUNKP57058 714 aa19.44■□□□□ 0.7
SNX1-203ENST00000558040 GUCY1B3Q02153 619 aa19.44■□□□□ 0.7
SNX1-203ENST00000558040 SNAPC2Q13487 334 aa19.44■□□□□ 0.7
SNX1-203ENST00000558040 DGKZQ13574 1117 aa19.44■□□□□ 0.7
SNX1-203ENST00000558040 WWC2Q6AWC2 1192 aa19.44■□□□□ 0.7
SNX1-203ENST00000558040 FASTKD5Q7L8L6 764 aaKnown RBP19.44■□□□□ 0.7
SNX1-203ENST00000558040 WNK4Q96J92 1243 aa19.44■□□□□ 0.7
SNX1-203ENST00000558040 ZSCAN16Q9H4T2 348 aaPredicted RBP19.44■□□□□ 0.7
SNX1-203ENST00000558040 BRMS1Q9HCU9 246 aa19.44■□□□□ 0.7
SNX1-203ENST00000558040 BARHL2Q9NY43 387 aa19.44■□□□□ 0.7
SNX1-203ENST00000558040 VPS54Q9P1Q0 977 aa19.44■□□□□ 0.7
SNX1-203ENST00000558040 ZDHHC9Q9Y397 364 aa19.44■□□□□ 0.7
SNX1-203ENST00000558040 LOC285556D6RIA3 1793 aa19.43■□□□□ 0.7
SNX1-203ENST00000558040 USP17L15C9J2P7 530 aa19.43■□□□□ 0.7
SNX1-203ENST00000558040 USP17L13C9JLJ4 530 aa19.43■□□□□ 0.7
SNX1-203ENST00000558040 USP17L11C9JVI0 530 aa19.43■□□□□ 0.7
SNX1-203ENST00000558040 USP17L18D6R9N7 530 aa19.43■□□□□ 0.7
SNX1-203ENST00000558040 USP17L22D6RA61 530 aa19.43■□□□□ 0.7
SNX1-203ENST00000558040 USP17L17D6RBQ6 530 aa19.43■□□□□ 0.7
SNX1-203ENST00000558040 USP17L19D6RCP7 530 aa19.43■□□□□ 0.7
SNX1-203ENST00000558040 USP17L20D6RJB6 530 aa19.43■□□□□ 0.7
SNX1-203ENST00000558040 MMP1P03956 469 aa19.43■□□□□ 0.7
SNX1-203ENST00000558040 FDX1P10109 184 aa19.43■□□□□ 0.7
SNX1-203ENST00000558040 CALML3P27482 149 aa19.43■□□□□ 0.7
SNX1-203ENST00000558040 USP17L24Q0WX57 530 aa19.43■□□□□ 0.7
SNX1-203ENST00000558040 FSTL1Q12841 308 aa19.43■□□□□ 0.7
SNX1-203ENST00000558040 GNL2Q13823 731 aaKnown RBP19.43■□□□□ 0.7
SNX1-203ENST00000558040 QRICH1Q2TAL8 776 aa19.43■□□□□ 0.7
SNX1-203ENST00000558040 FOXD4L5Q5VV16 416 aaPredicted RBP19.43■□□□□ 0.7
SNX1-203ENST00000558040 MCTP1Q6DN14 999 aa19.43■□□□□ 0.7
SNX1-203ENST00000558040 PPP1R18Q6NYC8 613 aa19.43■□□□□ 0.7
SNX1-203ENST00000558040 GADL1Q6ZQY3 521 aa19.43■□□□□ 0.7
SNX1-203ENST00000558040 FOXD4L4Q8WXT5 416 aaPredicted RBP19.43■□□□□ 0.7
SNX1-203ENST00000558040 GPKOWQ92917 476 aaPredicted RBP eCLIP19.43■□□□□ 0.7
SNX1-203ENST00000558040 PTPRFP10586 1907 aa19.43■□□□□ 0.7
SNX1-203ENST00000558040 BAZ2BQ9UIF8 2168 aaKnown RBP19.42■□□□□ 0.7
SNX1-203ENST00000558040 STXBP3O00186 592 aa19.42■□□□□ 0.7
SNX1-203ENST00000558040 ZBTB48P10074 688 aaPredicted RBP19.42■□□□□ 0.7
SNX1-203ENST00000558040 NAPAP54920 295 aa19.42■□□□□ 0.7
SNX1-203ENST00000558040 NLRP5P59047 1200 aa19.42■□□□□ 0.7
SNX1-203ENST00000558040 OTUD7BQ6GQQ9 843 aa19.42■□□□□ 0.7
SNX1-203ENST00000558040 GALNT17Q6IS24 598 aa19.42■□□□□ 0.7
SNX1-203ENST00000558040 PHF20Q9BVI0 1012 aa19.42■□□□□ 0.7
SNX1-203ENST00000558040 AMNQ9BXJ7 453 aa19.42■□□□□ 0.7
SNX1-203ENST00000558040 RANBP17Q9H2T7 1088 aaKnown RBP19.42■□□□□ 0.7
SNX1-203ENST00000558040 GJB4Q9NTQ9 266 aa19.42■□□□□ 0.7
SNX1-203ENST00000558040 FBXO28Q9NVF7 368 aa19.42■□□□□ 0.7
SNX1-203ENST00000558040 PNMA2Q9UL42 364 aa19.42■□□□□ 0.7
SNX1-203ENST00000558040 PPP1R9AQ9ULJ8 1098 aa19.42■□□□□ 0.7
SNX1-203ENST00000558040 CTDP1Q9Y5B0 961 aaPredicted RBP19.42■□□□□ 0.7
SNX1-203ENST00000558040 MYPNQ86TC9 1320 aa19.42■□□□□ 0.7
SNX1-203ENST00000558040 GTF2A2P52657 109 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms