RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 KRT23Q9C075 422 aa13.88□□□□□ -0.19
LDLR-205ENST00000557933 USP21Q9UK80 565 aa13.88□□□□□ -0.19
LDLR-205ENST00000557933 ATP8B1O43520 1251 aa13.88□□□□□ -0.19
LDLR-205ENST00000557933 KCNQ4P56696 695 aa13.88□□□□□ -0.19
LDLR-205ENST00000557933 TCP11X2Q5H9J9 407 aa13.88□□□□□ -0.19
LDLR-205ENST00000557933 SPATA20Q8TB22 786 aa13.88□□□□□ -0.19
LDLR-205ENST00000557933 HERVK_113P62684 666 aa13.87□□□□□ -0.19
LDLR-205ENST00000557933 CYP26C1Q6V0L0 522 aa13.87□□□□□ -0.19
LDLR-205ENST00000557933 MSANTD4Q8NCY6 345 aa13.87□□□□□ -0.19
LDLR-205ENST00000557933 C8orf37Q96NL8 207 aa13.87□□□□□ -0.19
LDLR-205ENST00000557933 CEP131Q9UPN4 1083 aa13.87□□□□□ -0.19
LDLR-205ENST00000557933 SAMM50Q9Y512 469 aa13.87□□□□□ -0.19
LDLR-205ENST00000557933 UTRNP46939 3433 aa13.87□□□□□ -0.19
LDLR-205ENST00000557933 SYF2O95926 243 aaKnown RBP13.87□□□□□ -0.19
LDLR-205ENST00000557933 EIF5P55010 431 aaKnown RBP13.87□□□□□ -0.19
LDLR-205ENST00000557933 LPIN2Q92539 896 aa13.87□□□□□ -0.19
LDLR-205ENST00000557933 TRIM47Q96LD4 638 aa13.87□□□□□ -0.19
LDLR-205ENST00000557933 RAB21Q9UL25 225 aa13.87□□□□□ -0.19
LDLR-205ENST00000557933 PARP1P09874 1014 aaKnown RBP13.87□□□□□ -0.19
LDLR-205ENST00000557933 TRIM21P19474 475 aaKnown RBP13.87□□□□□ -0.19
LDLR-205ENST00000557933 LIG3P49916 1009 aa13.87□□□□□ -0.19
LDLR-205ENST00000557933 KCTD16Q68DU8 428 aa13.87□□□□□ -0.19
LDLR-205ENST00000557933 CTR9Q6PD62 1173 aa13.87□□□□□ -0.19
LDLR-205ENST00000557933 IRF2BP1Q8IU81 584 aa13.87□□□□□ -0.19
LDLR-205ENST00000557933 SRBD1Q8N5C6 995 aaKnown RBP13.87□□□□□ -0.19
LDLR-205ENST00000557933 CCDC148Q8NFR7 591 aa13.87□□□□□ -0.19
LDLR-205ENST00000557933 AATFQ9NY61 560 aaKnown RBP eCLIP13.87□□□□□ -0.19
LDLR-205ENST00000557933 TRPC5Q9UL62 973 aaPredicted RBP13.87□□□□□ -0.19
LDLR-205ENST00000557933 TTF2Q9UNY4 1162 aaKnown RBP13.87□□□□□ -0.19
LDLR-205ENST00000557933 MAP3K15Q6ZN16 1313 aa13.86□□□□□ -0.19
LDLR-205ENST00000557933 NCK2O43639 380 aa13.86□□□□□ -0.19
LDLR-205ENST00000557933 CCT5P48643 541 aa13.86□□□□□ -0.19
LDLR-205ENST00000557933 AMPD2Q01433 879 aa13.86□□□□□ -0.19
LDLR-205ENST00000557933 DHX37Q8IY37 1157 aaKnown RBP13.86□□□□□ -0.19
LDLR-205ENST00000557933 JAKMIP2Q96AA8 810 aa13.86□□□□□ -0.19
LDLR-205ENST00000557933 FAM205AQ6ZU69 1335 aa13.86□□□□□ -0.19
LDLR-205ENST00000557933 WDR19Q8NEZ3 1342 aa13.86□□□□□ -0.19
LDLR-205ENST00000557933 USP17L12C9JPN9 530 aa13.86□□□□□ -0.19
LDLR-205ENST00000557933 USP17L21D6R901 530 aa13.86□□□□□ -0.19
LDLR-205ENST00000557933 SLC5A1P13866 664 aa13.86□□□□□ -0.19
LDLR-205ENST00000557933 KANK3Q6NY19 840 aa13.86□□□□□ -0.19
LDLR-205ENST00000557933 WDR59Q6PJI9 974 aa13.86□□□□□ -0.19
LDLR-205ENST00000557933 BICDL1Q6ZP65 573 aa13.86□□□□□ -0.19
LDLR-205ENST00000557933 TMC4Q7Z404 712 aa13.86□□□□□ -0.19
LDLR-205ENST00000557933 DZIP3Q86Y13 1208 aaKnown RBP13.86□□□□□ -0.19
LDLR-205ENST00000557933 TMTC1Q8IUR5 882 aa13.86□□□□□ -0.19
LDLR-205ENST00000557933 TRIML1Q8N9V2 468 aa13.86□□□□□ -0.19
LDLR-205ENST00000557933 PROCA1Q8NCQ7 364 aaPredicted RBP13.86□□□□□ -0.19
LDLR-205ENST00000557933 SMARCC1Q92922 1105 aaPredicted RBP13.86□□□□□ -0.19
LDLR-205ENST00000557933 CNNM2Q9H8M5 875 aa13.86□□□□□ -0.19
LDLR-205ENST00000557933 MLXIPQ9HAP2 919 aa13.86□□□□□ -0.19
LDLR-205ENST00000557933 LUC7L2Q9Y383 392 aaKnown RBP13.86□□□□□ -0.19
LDLR-205ENST00000557933 AFF2P51816 1311 aa13.85□□□□□ -0.19
LDLR-205ENST00000557933 ESYT3A0FGR9 886 aa13.85□□□□□ -0.19
LDLR-205ENST00000557933 RPN1P04843 607 aaKnown RBP13.85□□□□□ -0.19
LDLR-205ENST00000557933 IDEP14735 1019 aa13.85□□□□□ -0.19
LDLR-205ENST00000557933 STAT6P42226 847 aa13.85□□□□□ -0.19
LDLR-205ENST00000557933 SF3A3Q12874 501 aaKnown RBP eCLIP13.85□□□□□ -0.199e-7■■□□□ 13.7
LDLR-205ENST00000557933 NPY5RQ15761 445 aa13.85□□□□□ -0.19
LDLR-205ENST00000557933 MICALL1Q8N3F8 863 aa13.85□□□□□ -0.19
LDLR-205ENST00000557933 GOLGA6L1Q8N7Z2 621 aa13.85□□□□□ -0.19
LDLR-205ENST00000557933 PHF20Q9BVI0 1012 aa13.85□□□□□ -0.19
LDLR-205ENST00000557933 KANSL2Q9H9L4 492 aa13.85□□□□□ -0.19
LDLR-205ENST00000557933 SAR1BQ9Y6B6 198 aa13.85□□□□□ -0.19
LDLR-205ENST00000557933 BTAF1O14981 1849 aa13.85□□□□□ -0.19
LDLR-205ENST00000557933 ANKRD36CQ5JPF3 1778 aa13.85□□□□□ -0.19
LDLR-205ENST00000557933 ARID4AP29374 1257 aaPredicted RBP13.85□□□□□ -0.19
LDLR-205ENST00000557933 CCDC178Q5BJE1 867 aa13.85□□□□□ -0.19
LDLR-205ENST00000557933 SUSD4Q5VX71 490 aa13.85□□□□□ -0.19
LDLR-205ENST00000557933 LRRC15Q8TF66 581 aa13.85□□□□□ -0.19
LDLR-205ENST00000557933 STAG1Q8WVM7 1258 aa13.85□□□□□ -0.19
LDLR-205ENST00000557933 GJD4Q96KN9 370 aaPredicted RBP13.85□□□□□ -0.19
LDLR-205ENST00000557933 ZSCAN10Q96SZ4 725 aaPredicted RBP13.85□□□□□ -0.19
LDLR-205ENST00000557933 ABCC12Q96J65 1359 aa13.85□□□□□ -0.19
LDLR-205ENST00000557933 AKAP11Q9UKA4 1901 aa13.85□□□□□ -0.19
LDLR-205ENST00000557933 STK36Q9NRP7 1315 aa13.85□□□□□ -0.19
LDLR-205ENST00000557933 RGPD3A6NKT7 1758 aaPredicted RBP13.85□□□□□ -0.19
LDLR-205ENST00000557933 RGPD4Q7Z3J3 1758 aa13.85□□□□□ -0.19
LDLR-205ENST00000557933 CCDC196A0A1B0GTZ2 297 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 STARD3NLO95772 234 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 GOLGA8HP0CJ92 632 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 KLRK1P26718 216 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 ATP1A2P50993 1020 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 SND1Q7KZF4 910 aaKnown RBP eCLIP13.84□□□□□ -0.192e-7■■■□□ 16.9
LDLR-205ENST00000557933 SH3RF1Q7Z6J0 888 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 CATIPQ7Z7H3 387 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 SH2D3CQ8N5H7 860 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 IQUBQ8NA54 791 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 MARCH10Q8NA82 808 aaPredicted RBP13.84□□□□□ -0.19
LDLR-205ENST00000557933 AFAP1L1Q8TED9 768 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 COG1Q8WTW3 980 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 ESR2Q92731 530 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 GSDMAQ96QA5 445 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 CTAGE1Q96RT6 745 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 TMEM60Q9H2L4 133 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 FAM207AQ9NSI2 230 aaPredicted RBP13.84□□□□□ -0.19
LDLR-205ENST00000557933 DMGDHQ9UI17 866 aaKnown RBP13.84□□□□□ -0.19
LDLR-205ENST00000557933 ZSCAN5CA6NGD5 496 aaPredicted RBP13.84□□□□□ -0.19
LDLR-205ENST00000557933 USP5P45974 858 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 DNAAF5Q86Y56 855 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms