RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 NKX2-4Q9H2Z4 354 aa11.32□□□□□ -0.6
SYNE2-224ENST00000557024 MSRAQ9UJ68 235 aa11.32□□□□□ -0.6
SYNE2-224ENST00000557024 SYNRGQ9UMZ2 1314 aa11.32□□□□□ -0.6
SYNE2-224ENST00000557024 ROBO3Q96MS0 1386 aa11.31□□□□□ -0.6
SYNE2-224ENST00000557024 PNMA6EA0A0J9YXQ4 647 aa11.31□□□□□ -0.6
SYNE2-224ENST00000557024 APBB1O00213 710 aa11.31□□□□□ -0.6
SYNE2-224ENST00000557024 BMP1P13497 986 aa11.31□□□□□ -0.6
SYNE2-224ENST00000557024 RAB30Q15771 203 aa11.31□□□□□ -0.6
SYNE2-224ENST00000557024 TNNI3KQ59H18 835 aa11.31□□□□□ -0.6
SYNE2-224ENST00000557024 ZNF365Q70YC5 407 aa11.31□□□□□ -0.6
SYNE2-224ENST00000557024 SPICE1Q8N0Z3 855 aa11.31□□□□□ -0.6
SYNE2-224ENST00000557024 MAGEB6Q8N7X4 407 aa11.31□□□□□ -0.6
SYNE2-224ENST00000557024 TSEN34Q9BSV6 310 aaKnown RBP11.31□□□□□ -0.6
SYNE2-224ENST00000557024 PPP1R12CQ9BZL4 782 aa11.31□□□□□ -0.6
SYNE2-224ENST00000557024 CXXC1Q9P0U4 656 aaPredicted RBP11.31□□□□□ -0.6
SYNE2-224ENST00000557024 YBX2Q9Y2T7 364 aaKnown RBP11.31□□□□□ -0.6
SYNE2-224ENST00000557024 HCN4Q9Y3Q4 1203 aa11.31□□□□□ -0.6
SYNE2-224ENST00000557024 FPGT-TNNI3KV9GXZ4 949 aa11.31□□□□□ -0.6
SYNE2-224ENST00000557024 CHD7Q9P2D1 2997 aa11.31□□□□□ -0.6
SYNE2-224ENST00000557024 XIRP2A4UGR9 3374 aa11.3□□□□□ -0.6
SYNE2-224ENST00000557024 MYADML2A6NDP7 307 aa11.3□□□□□ -0.6
SYNE2-224ENST00000557024 POLR3DP05423 398 aaPredicted RBP11.3□□□□□ -0.6
SYNE2-224ENST00000557024 KCNQ1P51787 676 aa11.3□□□□□ -0.6
SYNE2-224ENST00000557024 KCTD2Q14681 263 aa11.3□□□□□ -0.6
SYNE2-224ENST00000557024 TMEM132BQ14DG7 1078 aa11.3□□□□□ -0.6
SYNE2-224ENST00000557024 KCNA10Q16322 511 aa11.3□□□□□ -0.6
SYNE2-224ENST00000557024 ZNF792Q3KQV3 632 aa11.3□□□□□ -0.6
SYNE2-224ENST00000557024 PSRC1Q6PGN9 363 aaPredicted RBP11.3□□□□□ -0.6
SYNE2-224ENST00000557024 CERS3Q8IU89 383 aa11.3□□□□□ -0.6
SYNE2-224ENST00000557024 CLEC10AQ8IUN9 316 aa11.3□□□□□ -0.6
SYNE2-224ENST00000557024 TMEM199Q8N511 208 aa11.3□□□□□ -0.6
SYNE2-224ENST00000557024 SLC28A3Q9HAS3 691 aa11.3□□□□□ -0.6
SYNE2-224ENST00000557024 CNPY2Q9Y2B0 182 aa11.3□□□□□ -0.6
SYNE2-224ENST00000557024 SYNGAP1Q96PV0 1343 aa11.3□□□□□ -0.6
SYNE2-224ENST00000557024 MOXD2PA6NHM9 499 aa11.29□□□□□ -0.6
SYNE2-224ENST00000557024 SLC25A27O95847 323 aa11.29□□□□□ -0.6
SYNE2-224ENST00000557024 IRX5P78411 483 aaPredicted RBP11.29□□□□□ -0.6
SYNE2-224ENST00000557024 GABPAQ06546 454 aa11.29□□□□□ -0.6
SYNE2-224ENST00000557024 OS9Q13438 667 aaPredicted RBP11.29□□□□□ -0.6
SYNE2-224ENST00000557024 SKIV2LQ15477 1246 aaKnown RBP11.29□□□□□ -0.6
SYNE2-224ENST00000557024 CCSAPQ6IQ19 270 aaPredicted RBP11.29□□□□□ -0.6
SYNE2-224ENST00000557024 KLHDC9Q8NEP7 349 aa11.29□□□□□ -0.6
SYNE2-224ENST00000557024 VTI1AQ96AJ9 217 aa11.29□□□□□ -0.6
SYNE2-224ENST00000557024 DDX27Q96GQ7 796 aaKnown RBP11.29□□□□□ -0.6
SYNE2-224ENST00000557024 ZNF512BQ96KM6 892 aaPredicted RBP11.29□□□□□ -0.6
SYNE2-224ENST00000557024 GLT1D1Q96MS3 346 aa11.29□□□□□ -0.6
SYNE2-224ENST00000557024 LRFN3Q9BTN0 628 aa11.29□□□□□ -0.6
SYNE2-224ENST00000557024 EPHX3Q9H6B9 360 aa11.29□□□□□ -0.6
SYNE2-224ENST00000557024 TLR7Q9NYK1 1049 aaKnown RBP11.29□□□□□ -0.6
SYNE2-224ENST00000557024 MROH7Q68CQ1 1323 aa11.29□□□□□ -0.6
SYNE2-224ENST00000557024 A0A0G2JMZ2 1700 aa11.29□□□□□ -0.6
SYNE2-224ENST00000557024 FOCADQ5VW36 1801 aa11.28□□□□□ -0.6
SYNE2-224ENST00000557024 IGSF3O75054 1194 aa11.28□□□□□ -0.6
SYNE2-224ENST00000557024 GNAI2P04899 355 aa11.28□□□□□ -0.6
SYNE2-224ENST00000557024 CYP2C18P33260 490 aa11.28□□□□□ -0.6
SYNE2-224ENST00000557024 CDK7P50613 346 aa11.28□□□□□ -0.6
SYNE2-224ENST00000557024 RABGGTBP53611 331 aa11.28□□□□□ -0.6
SYNE2-224ENST00000557024 MFSD10Q14728 455 aa11.28□□□□□ -0.6
SYNE2-224ENST00000557024 MAMSTRQ6ZN01 415 aa11.28□□□□□ -0.6
SYNE2-224ENST00000557024 RIOX2Q8IUF8 465 aa11.28□□□□□ -0.6
SYNE2-224ENST00000557024 SIAH1Q8IUQ4 282 aa11.28□□□□□ -0.6
SYNE2-224ENST00000557024 HERVK_113Q902F9 699 aa11.28□□□□□ -0.6
SYNE2-224ENST00000557024 GPR108Q9NPR9 543 aa11.28□□□□□ -0.6
SYNE2-224ENST00000557024 FBXO28Q9NVF7 368 aa11.28□□□□□ -0.6
SYNE2-224ENST00000557024 DBNLQ9UJU6 430 aaKnown RBP11.28□□□□□ -0.6
SYNE2-224ENST00000557024 ZHX1Q9UKY1 873 aaPredicted RBP11.28□□□□□ -0.6
SYNE2-224ENST00000557024 FAM184BQ9ULE4 1060 aa11.28□□□□□ -0.6
SYNE2-224ENST00000557024 DIS3Q9Y2L1 958 aaKnown RBP11.28□□□□□ -0.6
SYNE2-224ENST00000557024 NCOR1O75376 2440 aa11.28□□□□□ -0.6
SYNE2-224ENST00000557024 CDK5RAP2Q96SN8 1893 aa11.27□□□□□ -0.6
SYNE2-224ENST00000557024 REV3LO60673 3130 aa11.27□□□□□ -0.6
SYNE2-224ENST00000557024 SEC24BO95487 1268 aa11.27□□□□□ -0.61
SYNE2-224ENST00000557024 C6orf222P0C671 652 aaPredicted RBP11.27□□□□□ -0.61
SYNE2-224ENST00000557024 AAK1Q2M2I8 961 aa11.27□□□□□ -0.61
SYNE2-224ENST00000557024 PPP2R2DQ66LE6 453 aa11.27□□□□□ -0.61
SYNE2-224ENST00000557024 TMEM179Q6ZVK1 233 aa11.27□□□□□ -0.61
SYNE2-224ENST00000557024 OTOP2Q7RTS6 562 aa11.27□□□□□ -0.61
SYNE2-224ENST00000557024 RIOK1Q9BRS2 568 aaKnown RBP11.27□□□□□ -0.61
SYNE2-224ENST00000557024 ANTXR1Q9H6X2 564 aa11.27□□□□□ -0.61
SYNE2-224ENST00000557024 VCPKMTQ9H867 229 aa11.27□□□□□ -0.61
SYNE2-224ENST00000557024 IL23AQ9NPF7 189 aa11.27□□□□□ -0.61
SYNE2-224ENST00000557024 MCM9Q9NXL9 1143 aa11.27□□□□□ -0.61
SYNE2-224ENST00000557024 TMX2Q9Y320 296 aa11.27□□□□□ -0.61
SYNE2-224ENST00000557024 ARIH1Q9Y4X5 557 aaPredicted RBP11.27□□□□□ -0.61
SYNE2-224ENST00000557024 ELP1O95163 1332 aa11.27□□□□□ -0.61
SYNE2-224ENST00000557024 MAGEB6P1A0A0J9YX57 407 aa11.26□□□□□ -0.61
SYNE2-224ENST00000557024 A0A0U1RQG5 324 aaPredicted RBP11.26□□□□□ -0.61
SYNE2-224ENST00000557024 ARVCFO00192 962 aa11.26□□□□□ -0.61
SYNE2-224ENST00000557024 WDR46O15213 610 aaKnown RBP11.26□□□□□ -0.61
SYNE2-224ENST00000557024 ADCY6O43306 1168 aa11.26□□□□□ -0.61
SYNE2-224ENST00000557024 DUSP11O75319 330 aaKnown RBP11.26□□□□□ -0.61
SYNE2-224ENST00000557024 SNAI1O95863 264 aaPredicted RBP11.26□□□□□ -0.61
SYNE2-224ENST00000557024 FGBP02675 491 aa11.26□□□□□ -0.61
SYNE2-224ENST00000557024 ASGR1P07306 291 aa11.26□□□□□ -0.61
SYNE2-224ENST00000557024 CYP2D6P10635 497 aa11.26□□□□□ -0.61
SYNE2-224ENST00000557024 MYOGP15173 224 aa11.26□□□□□ -0.61
SYNE2-224ENST00000557024 STAT3P40763 770 aa11.26□□□□□ -0.61
SYNE2-224ENST00000557024 ICA1Q05084 483 aa11.26□□□□□ -0.61
SYNE2-224ENST00000557024 TMEM31Q5JXX7 168 aa11.26□□□□□ -0.61
SYNE2-224ENST00000557024 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms