RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 EIF3AQ14152 1382 aaKnown RBP3.63□□□□□ -1.83
SLIRP-208ENST00000556956 KIAA1107Q9UPP5 1409 aa3.63□□□□□ -1.83
SLIRP-208ENST00000556956 PLEKHH2Q8IVE3 1493 aa3.63□□□□□ -1.83
SLIRP-208ENST00000556956 ZC3H12DA2A288 527 aaKnown RBP3.63□□□□□ -1.83
SLIRP-208ENST00000556956 GOLGA6L3A6NEY3 463 aa3.63□□□□□ -1.83
SLIRP-208ENST00000556956 SLC22A31A6NKX4 558 aa3.63□□□□□ -1.83
SLIRP-208ENST00000556956 FAM155AB1AL88 458 aaPredicted RBP3.63□□□□□ -1.83
SLIRP-208ENST00000556956 PLIN1O60240 522 aa3.63□□□□□ -1.83
SLIRP-208ENST00000556956 BPNT1O95861 308 aa3.63□□□□□ -1.83
SLIRP-208ENST00000556956 LIG3P49916 1009 aa3.63□□□□□ -1.83
SLIRP-208ENST00000556956 CLCN7P51798 805 aa3.63□□□□□ -1.83
SLIRP-208ENST00000556956 HSP90AA2PQ14568 343 aaPredicted RBP3.63□□□□□ -1.83
SLIRP-208ENST00000556956 INPP5AQ14642 412 aa3.63□□□□□ -1.83
SLIRP-208ENST00000556956 NKPD1Q17RQ9 610 aa3.63□□□□□ -1.83
SLIRP-208ENST00000556956 WIPI1Q5MNZ9 446 aaPredicted RBP3.63□□□□□ -1.83
SLIRP-208ENST00000556956 SLC6A19Q695T7 634 aa3.63□□□□□ -1.83
SLIRP-208ENST00000556956 ARMCX6Q7L4S7 300 aa3.63□□□□□ -1.83
SLIRP-208ENST00000556956 Q8N1X5 172 aa3.63□□□□□ -1.83
SLIRP-208ENST00000556956 PLPPR2Q96GM1 343 aa3.63□□□□□ -1.83
SLIRP-208ENST00000556956 CCDC120Q96HB5 630 aa3.63□□□□□ -1.83
SLIRP-208ENST00000556956 NAP1L5Q96NT1 182 aaPredicted RBP3.63□□□□□ -1.83
SLIRP-208ENST00000556956 GZF1Q9H116 711 aaPredicted RBP3.63□□□□□ -1.83
SLIRP-208ENST00000556956 PNNQ9H307 717 aaKnown RBP3.63□□□□□ -1.83
SLIRP-208ENST00000556956 UPF2Q9HAU5 1272 aaKnown RBP3.63□□□□□ -1.83
SLIRP-208ENST00000556956 ISY1Q9ULR0 285 aaKnown RBP3.63□□□□□ -1.83
SLIRP-208ENST00000556956 TPX2Q9ULW0 747 aaKnown RBP3.63□□□□□ -1.83
SLIRP-208ENST00000556956 CHD1O14646 1710 aa3.63□□□□□ -1.83
SLIRP-208ENST00000556956 SUPT6HQ7KZ85 1726 aaKnown RBP3.63□□□□□ -1.83
SLIRP-208ENST00000556956 LRRIQ1Q96JM4 1722 aa3.63□□□□□ -1.83
SLIRP-208ENST00000556956 ZMYM4Q5VZL5 1548 aa3.63□□□□□ -1.83
SLIRP-208ENST00000556956 MAPK8IP3Q9UPT6 1336 aa3.63□□□□□ -1.83
SLIRP-208ENST00000556956 USP31Q70CQ4 1352 aa3.63□□□□□ -1.83
SLIRP-208ENST00000556956 ABCC5O15440 1437 aa3.62□□□□□ -1.83
SLIRP-208ENST00000556956 DAPK1P53355 1430 aa3.62□□□□□ -1.83
SLIRP-208ENST00000556956 ST20-MTHFSA0A0A6YYL1 179 aa3.62□□□□□ -1.83
SLIRP-208ENST00000556956 ZBTB7CA1YPR0 619 aa3.62□□□□□ -1.83
SLIRP-208ENST00000556956 RFXAPO00287 272 aa3.62□□□□□ -1.83
SLIRP-208ENST00000556956 C6P13671 934 aa3.62□□□□□ -1.83
SLIRP-208ENST00000556956 PI3P19957 117 aa3.62□□□□□ -1.83
SLIRP-208ENST00000556956 PTMSP20962 102 aa3.62□□□□□ -1.83
SLIRP-208ENST00000556956 NTF4P34130 210 aa3.62□□□□□ -1.83
SLIRP-208ENST00000556956 ETV3P41162 512 aa3.62□□□□□ -1.83
SLIRP-208ENST00000556956 MRE11P49959 708 aa3.62□□□□□ -1.83
SLIRP-208ENST00000556956 ERVFC1P60507 584 aa3.62□□□□□ -1.83
SLIRP-208ENST00000556956 RPL6Q02878 288 aaKnown RBP3.62□□□□□ -1.83
SLIRP-208ENST00000556956 MLECQ14165 292 aa3.62□□□□□ -1.83
SLIRP-208ENST00000556956 WDR43Q15061 677 aaKnown RBP eCLIP3.62□□□□□ -1.83
SLIRP-208ENST00000556956 SFRP5Q5T4F7 317 aa3.62□□□□□ -1.83
SLIRP-208ENST00000556956 LRFN4Q6PJG9 635 aa3.62□□□□□ -1.83
SLIRP-208ENST00000556956 DNAJC14Q6Y2X3 702 aaPredicted RBP3.62□□□□□ -1.83
SLIRP-208ENST00000556956 NPAS4Q8IUM7 802 aa3.62□□□□□ -1.83
SLIRP-208ENST00000556956 NGEFQ8N5V2 710 aa3.62□□□□□ -1.83
SLIRP-208ENST00000556956 DACT3Q96B18 629 aaPredicted RBP3.62□□□□□ -1.83
SLIRP-208ENST00000556956 RSRP1Q9BUV0 290 aa3.62□□□□□ -1.83
SLIRP-208ENST00000556956 VTI1BQ9UEU0 232 aa3.62□□□□□ -1.83
SLIRP-208ENST00000556956 ADAM30Q9UKF2 790 aa3.62□□□□□ -1.83
SLIRP-208ENST00000556956 SAMD9Q5K651 1589 aa3.62□□□□□ -1.83
SLIRP-208ENST00000556956 PARD3Q8TEW0 1356 aa3.62□□□□□ -1.83
SLIRP-208ENST00000556956 RALGAPBQ86X10 1494 aa3.61□□□□□ -1.83
SLIRP-208ENST00000556956 MBD5Q9P267 1494 aa3.61□□□□□ -1.83
SLIRP-208ENST00000556956 RAD54L2Q9Y4B4 1467 aa3.61□□□□□ -1.83
SLIRP-208ENST00000556956 K7ESM1 405 aa3.61□□□□□ -1.83
SLIRP-208ENST00000556956 GFRA2O00451 464 aa3.61□□□□□ -1.83
SLIRP-208ENST00000556956 SEMA7AO75326 666 aa3.61□□□□□ -1.83
SLIRP-208ENST00000556956 EOMESO95936 686 aa3.61□□□□□ -1.83
SLIRP-208ENST00000556956 CST3P01034 146 aaPredicted RBP3.61□□□□□ -1.83
SLIRP-208ENST00000556956 TPM2P07951 284 aa3.61□□□□□ -1.83
SLIRP-208ENST00000556956 GRK4P32298 578 aa3.61□□□□□ -1.83
SLIRP-208ENST00000556956 GDF5P43026 501 aa3.61□□□□□ -1.83
SLIRP-208ENST00000556956 MAGEA10P43363 369 aaPredicted RBP3.61□□□□□ -1.83
SLIRP-208ENST00000556956 KIR3DL1P43629 444 aa3.61□□□□□ -1.83
SLIRP-208ENST00000556956 RGS3P49796 1198 aa3.61□□□□□ -1.83
SLIRP-208ENST00000556956 YARSP54577 528 aaKnown RBP3.61□□□□□ -1.83
SLIRP-208ENST00000556956 ADAM17P78536 824 aa3.61□□□□□ -1.83
SLIRP-208ENST00000556956 TMF1P82094 1093 aa3.61□□□□□ -1.83
SLIRP-208ENST00000556956 PTPN11Q06124 597 aaPredicted RBP3.61□□□□□ -1.83
SLIRP-208ENST00000556956 MAP3K11Q16584 847 aa3.61□□□□□ -1.83
SLIRP-208ENST00000556956 ZNF827Q17R98 1081 aa3.61□□□□□ -1.83
SLIRP-208ENST00000556956 LETMD1Q6P1Q0 360 aa3.61□□□□□ -1.83
SLIRP-208ENST00000556956 C22orf34Q6ZV56 151 aa3.61□□□□□ -1.83
SLIRP-208ENST00000556956 FAM214BQ7L5A3 538 aa3.61□□□□□ -1.83
SLIRP-208ENST00000556956 FRMD5Q7Z6J6 570 aa3.61□□□□□ -1.83
SLIRP-208ENST00000556956 PMFBP1Q8TBY8 1022 aa3.61□□□□□ -1.83
SLIRP-208ENST00000556956 JARID2Q92833 1246 aaPredicted RBP3.61□□□□□ -1.83
SLIRP-208ENST00000556956 MIPEPQ99797 713 aa3.61□□□□□ -1.83
SLIRP-208ENST00000556956 RRAGDQ9NQL2 400 aaPredicted RBP3.61□□□□□ -1.83
SLIRP-208ENST00000556956 GCC2Q8IWJ2 1684 aa3.61□□□□□ -1.83
SLIRP-208ENST00000556956 ANKRD30AQ9BXX3 1397 aa3.61□□□□□ -1.83
SLIRP-208ENST00000556956 BLMP54132 1417 aaPredicted RBP3.61□□□□□ -1.83
SLIRP-208ENST00000556956 ERCC6Q03468 1493 aa3.6□□□□□ -1.83
SLIRP-208ENST00000556956 IFT140Q96RY7 1462 aa3.6□□□□□ -1.83
SLIRP-208ENST00000556956 FSD2A1L4K1 749 aa3.6□□□□□ -1.83
SLIRP-208ENST00000556956 PGRP06401 933 aa3.6□□□□□ -1.83
SLIRP-208ENST00000556956 GBP2P32456 591 aaPredicted RBP3.6□□□□□ -1.83
SLIRP-208ENST00000556956 AFF3P51826 1226 aaKnown RBP3.6□□□□□ -1.83
SLIRP-208ENST00000556956 CHMP4BP1P59074 171 aa3.6□□□□□ -1.83
SLIRP-208ENST00000556956 LMNB2Q03252 620 aa3.6□□□□□ -1.83
SLIRP-208ENST00000556956 SLFN5Q08AF3 891 aa3.6□□□□□ -1.83
SLIRP-208ENST00000556956 SLBPQ14493 270 aaKnown RBP eCLIP3.6□□□□□ -1.83
SLIRP-208ENST00000556956 CC2D1BQ5T0F9 858 aaKnown RBP3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms