RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 GJA10Q969M2 543 aa13.62□□□□□ -0.23
CCDC88C-211ENST00000556726 TOPAZ1Q8N9V7 1692 aa13.62□□□□□ -0.23
CCDC88C-211ENST00000556726 ACTN4O43707 911 aaKnown RBP13.62□□□□□ -0.23
CCDC88C-211ENST00000556726 KIF5AQ12840 1032 aa13.62□□□□□ -0.23
CCDC88C-211ENST00000556726 ALX1Q15699 326 aa13.62□□□□□ -0.23
CCDC88C-211ENST00000556726 C2CD5Q86YS7 1000 aa13.62□□□□□ -0.23
CCDC88C-211ENST00000556726 REXO1L1PQ8IX06 675 aa13.62□□□□□ -0.23
CCDC88C-211ENST00000556726 CEP112Q8N8E3 955 aa13.62□□□□□ -0.23
CCDC88C-211ENST00000556726 TERF2Q15554 542 aa13.62□□□□□ -0.23
CCDC88C-211ENST00000556726 INTS5Q6P9B9 1019 aaKnown RBP13.62□□□□□ -0.23
CCDC88C-211ENST00000556726 GSDMAQ96QA5 445 aa13.62□□□□□ -0.23
CCDC88C-211ENST00000556726 ZNF287Q9HBT7 754 aa13.62□□□□□ -0.23
CCDC88C-211ENST00000556726 INTS13Q9NVM9 706 aa13.62□□□□□ -0.23
CCDC88C-211ENST00000556726 RSPH14Q9UHP6 348 aa13.62□□□□□ -0.23
CCDC88C-211ENST00000556726 EPN1Q9Y6I3 576 aaPredicted RBP13.62□□□□□ -0.23
CCDC88C-211ENST00000556726 LMTK3Q96Q04 1460 aa13.61□□□□□ -0.23
CCDC88C-211ENST00000556726 TRAF5O00463 557 aa13.61□□□□□ -0.23
CCDC88C-211ENST00000556726 FGFR2P21802 821 aa13.61□□□□□ -0.23
CCDC88C-211ENST00000556726 ERCC5P28715 1186 aaPredicted RBP13.61□□□□□ -0.23
CCDC88C-211ENST00000556726 NOP2P46087 812 aaKnown RBP13.61□□□□□ -0.23
CCDC88C-211ENST00000556726 LONRF2Q1L5Z9 754 aa13.61□□□□□ -0.23
CCDC88C-211ENST00000556726 PTF1AQ7RTS3 328 aa13.61□□□□□ -0.23
CCDC88C-211ENST00000556726 FAM107BQ9H098 131 aa13.61□□□□□ -0.23
CCDC88C-211ENST00000556726 LRWD1Q9UFC0 647 aa13.61□□□□□ -0.23
CCDC88C-211ENST00000556726 GTPBP6O43824 516 aaPredicted RBP13.61□□□□□ -0.23
CCDC88C-211ENST00000556726 CYLC1P35663 651 aaPredicted RBP13.61□□□□□ -0.23
CCDC88C-211ENST00000556726 BTDP43251 543 aa13.61□□□□□ -0.23
CCDC88C-211ENST00000556726 GNAQP50148 359 aa13.61□□□□□ -0.23
CCDC88C-211ENST00000556726 GABPB1Q06547 395 aaPredicted RBP13.61□□□□□ -0.23
CCDC88C-211ENST00000556726 ZNF804AQ7Z570 1209 aa13.61□□□□□ -0.23
CCDC88C-211ENST00000556726 TMTC1Q8IUR5 882 aa13.61□□□□□ -0.23
CCDC88C-211ENST00000556726 GSPT2Q8IYD1 628 aaKnown RBP13.61□□□□□ -0.23
CCDC88C-211ENST00000556726 TRIML1Q8N9V2 468 aa13.61□□□□□ -0.23
CCDC88C-211ENST00000556726 JAKMIP2Q96AA8 810 aa13.61□□□□□ -0.23
CCDC88C-211ENST00000556726 PIGSQ96S52 555 aa13.61□□□□□ -0.23
CCDC88C-211ENST00000556726 ANKRD2Q9GZV1 360 aa13.61□□□□□ -0.23
CCDC88C-211ENST00000556726 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.61□□□□□ -0.23
CCDC88C-211ENST00000556726 FAM196BA6NMK8 535 aa13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 NTSR2O95665 410 aa13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 DOK7Q18PE1 504 aa13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 C10orf67Q8IYJ2 551 aa13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 SNX29Q8TEQ0 813 aa13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 NYXQ9GZU5 481 aa13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 PARP3Q9Y6F1 533 aa13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 NALCNQ8IZF0 1738 aa13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 PHLPP2Q6ZVD8 1323 aa13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 KRT86O43790 486 aa13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 MFAP3LO75121 409 aa13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 KIF20AO95235 890 aa13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 IBSPP21815 317 aaPredicted RBP13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 NONOQ15233 471 aaKnown RBP eCLIP13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 TRAPPC3LQ5T215 181 aa13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 OR8K1Q8NGG5 319 aa13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 TMEM260Q9NX78 707 aa13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 ADGRG1Q9Y653 693 aa13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 RIC1Q4ADV7 1423 aa13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 BUB1O43683 1085 aa13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 USO1O60763 962 aaKnown RBP13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 PLCG1P19174 1290 aa13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 RRAGAQ7L523 313 aa13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 GPR161Q8N6U8 529 aaKnown RBP13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 NSUN4Q96CB9 384 aaKnown RBP13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 TMEM60Q9H2L4 133 aa13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 ARPP21Q9UBL0 812 aaPredicted RBP13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 CAMTA1Q9Y6Y1 1673 aa13.6□□□□□ -0.23
CCDC88C-211ENST00000556726 AMPD3Q01432 767 aa13.59□□□□□ -0.23
CCDC88C-211ENST00000556726 TROAPQ12815 778 aa13.59□□□□□ -0.23
CCDC88C-211ENST00000556726 PLS1Q14651 629 aa13.59□□□□□ -0.23
CCDC88C-211ENST00000556726 IFT81Q8WYA0 676 aa13.59□□□□□ -0.23
CCDC88C-211ENST00000556726 BSDC1Q9NW68 430 aaPredicted RBP13.59□□□□□ -0.23
CCDC88C-211ENST00000556726 TTF2Q9UNY4 1162 aaKnown RBP13.59□□□□□ -0.23
CCDC88C-211ENST00000556726 JCADQ9P266 1359 aa13.59□□□□□ -0.23
CCDC88C-211ENST00000556726 WDR19Q8NEZ3 1342 aa13.59□□□□□ -0.23
CCDC88C-211ENST00000556726 TADA3O75528 432 aa13.59□□□□□ -0.23
CCDC88C-211ENST00000556726 KLK7P49862 253 aa13.59□□□□□ -0.23
CCDC88C-211ENST00000556726 SNAP25P60880 206 aa13.59□□□□□ -0.23
CCDC88C-211ENST00000556726 NFIXQ14938 502 aa13.59□□□□□ -0.23
CCDC88C-211ENST00000556726 KRT79Q5XKE5 535 aa13.59□□□□□ -0.23
CCDC88C-211ENST00000556726 TUBGCP2Q9BSJ2 902 aa13.59□□□□□ -0.23
CCDC88C-211ENST00000556726 CALCOCO1Q9P1Z2 691 aa13.59□□□□□ -0.23
CCDC88C-211ENST00000556726 STK36Q9NRP7 1315 aa13.59□□□□□ -0.23
CCDC88C-211ENST00000556726 TTC26A0AVF1 554 aa13.59□□□□□ -0.23
CCDC88C-211ENST00000556726 TMCO5BA8MYB1 307 aa13.59□□□□□ -0.23
CCDC88C-211ENST00000556726 ABL1P00519 1130 aa13.59□□□□□ -0.23
CCDC88C-211ENST00000556726 FCER1AP12319 257 aa13.59□□□□□ -0.23
CCDC88C-211ENST00000556726 CACNB3P54284 484 aa13.59□□□□□ -0.23
CCDC88C-211ENST00000556726 SF3A3Q12874 501 aaKnown RBP eCLIP13.59□□□□□ -0.23
CCDC88C-211ENST00000556726 UBE2SQ16763 222 aa13.59□□□□□ -0.23
CCDC88C-211ENST00000556726 REXO1Q8N1G1 1221 aaKnown RBP13.59□□□□□ -0.23
CCDC88C-211ENST00000556726 TBCKQ8TEA7 893 aa13.59□□□□□ -0.23
CCDC88C-211ENST00000556726 CDC23Q9UJX2 597 aa13.59□□□□□ -0.23
CCDC88C-211ENST00000556726 VGLL3A8MV65 326 aa13.58□□□□□ -0.23
CCDC88C-211ENST00000556726 HLTFQ14527 1009 aaKnown RBP eCLIP13.58□□□□□ -0.23
CCDC88C-211ENST00000556726 PKN1Q16512 942 aa13.58□□□□□ -0.23
CCDC88C-211ENST00000556726 USH1GQ495M9 461 aa13.58□□□□□ -0.23
CCDC88C-211ENST00000556726 TTC19Q6DKK2 380 aaPredicted RBP13.58□□□□□ -0.23
CCDC88C-211ENST00000556726 FAM196AQ6ZSG2 479 aa13.58□□□□□ -0.23
CCDC88C-211ENST00000556726 SV2BQ7L1I2 683 aa13.58□□□□□ -0.23
CCDC88C-211ENST00000556726 KRT26Q7Z3Y9 468 aa13.58□□□□□ -0.23
CCDC88C-211ENST00000556726 SMCR8Q8TEV9 937 aaPredicted RBP13.58□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms