RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 CCDC27Q2M243 656 aa6.75□□□□□ -1.33
SCFD1-219ENST00000556413 SEZ6Q53EL9 994 aa6.75□□□□□ -1.33
SCFD1-219ENST00000556413 TCERG1LQ5VWI1 586 aa6.75□□□□□ -1.33
SCFD1-219ENST00000556413 GK5Q6ZS86 529 aa6.75□□□□□ -1.33
SCFD1-219ENST00000556413 ANTXR1Q9H6X2 564 aa6.75□□□□□ -1.33
SCFD1-219ENST00000556413 GGT7Q9UJ14 662 aa6.75□□□□□ -1.33
SCFD1-219ENST00000556413 VIPR1P32241 457 aa6.74□□□□□ -1.33
SCFD1-219ENST00000556413 RTP1P59025 263 aa6.74□□□□□ -1.33
SCFD1-219ENST00000556413 TMEM192Q8IY95 271 aa6.74□□□□□ -1.33
SCFD1-219ENST00000556413 REXO1Q8N1G1 1221 aaKnown RBP6.74□□□□□ -1.33
SCFD1-219ENST00000556413 PANK1Q8TE04 598 aa6.74□□□□□ -1.33
SCFD1-219ENST00000556413 FCRL2Q96LA5 508 aaPredicted RBP6.74□□□□□ -1.33
SCFD1-219ENST00000556413 ZCCHC4Q9H5U6 513 aa6.74□□□□□ -1.33
SCFD1-219ENST00000556413 CHST7Q9NS84 486 aa6.74□□□□□ -1.33
SCFD1-219ENST00000556413 SIRT5Q9NXA8 310 aa6.74□□□□□ -1.33
SCFD1-219ENST00000556413 TNFRSF10DQ9UBN6 386 aa6.74□□□□□ -1.33
SCFD1-219ENST00000556413 FADS2P1A8MWK0 482 aa6.73□□□□□ -1.33
SCFD1-219ENST00000556413 RFXAPO00287 272 aa6.73□□□□□ -1.33
SCFD1-219ENST00000556413 PI3P19957 117 aa6.73□□□□□ -1.33
SCFD1-219ENST00000556413 BUD31P41223 144 aaPredicted RBP6.73□□□□□ -1.33
SCFD1-219ENST00000556413 EPHB3P54753 998 aa6.73□□□□□ -1.33
SCFD1-219ENST00000556413 YBX1P67809 324 aaKnown RBP6.73□□□□□ -1.33
SCFD1-219ENST00000556413 APOBRQ0VD83 1088 aa6.73□□□□□ -1.33
SCFD1-219ENST00000556413 MRPL58Q14197 206 aaKnown RBP6.73□□□□□ -1.33
SCFD1-219ENST00000556413 KIR3DS1Q14943 382 aa6.73□□□□□ -1.33
SCFD1-219ENST00000556413 LCE5AQ5TCM9 118 aa6.73□□□□□ -1.33
SCFD1-219ENST00000556413 HS2ST1Q7LGA3 356 aa6.73□□□□□ -1.33
SCFD1-219ENST00000556413 SIGLEC10Q96LC7 697 aa6.73□□□□□ -1.33
SCFD1-219ENST00000556413 KCNC2Q96PR1 638 aa6.73□□□□□ -1.33
SCFD1-219ENST00000556413 CNTD2Q9H8S5 307 aa6.73□□□□□ -1.33
SCFD1-219ENST00000556413 IRAK3Q9Y616 596 aa6.73□□□□□ -1.33
SCFD1-219ENST00000556413 MEIS3P2A8K0S8 358 aa6.72□□□□□ -1.33
SCFD1-219ENST00000556413 MEIS1O00470 390 aa6.72□□□□□ -1.33
SCFD1-219ENST00000556413 NME1P15531 152 aaKnown RBP6.72□□□□□ -1.33
SCFD1-219ENST00000556413 MCM4P33991 863 aa6.72□□□□□ -1.33
SCFD1-219ENST00000556413 CTSKP43235 329 aa6.72□□□□□ -1.33
SCFD1-219ENST00000556413 ERVFRD-1P60508 538 aa6.72□□□□□ -1.33
SCFD1-219ENST00000556413 HSF5Q4G112 596 aaPredicted RBP6.72□□□□□ -1.33
SCFD1-219ENST00000556413 MARCH10Q8NA82 808 aaPredicted RBP6.72□□□□□ -1.33
SCFD1-219ENST00000556413 SLC6A18Q96N87 628 aa6.72□□□□□ -1.33
SCFD1-219ENST00000556413 MKRN2Q9H000 416 aaKnown RBP6.72□□□□□ -1.33
SCFD1-219ENST00000556413 GFOD1Q9NXC2 390 aa6.72□□□□□ -1.33
SCFD1-219ENST00000556413 TNFRSF10CO14798 259 aa6.71□□□□□ -1.34
SCFD1-219ENST00000556413 N4BP3O15049 544 aa6.71□□□□□ -1.34
SCFD1-219ENST00000556413 TRIM13O60858 407 aa6.71□□□□□ -1.34
SCFD1-219ENST00000556413 CEBPAP49715 358 aaPredicted RBP6.71□□□□□ -1.34
SCFD1-219ENST00000556413 ZNF165P49910 485 aa6.71□□□□□ -1.34
SCFD1-219ENST00000556413 GALNT18Q6P9A2 607 aa6.71□□□□□ -1.34
SCFD1-219ENST00000556413 TMEM151BQ8IW70 566 aa6.71□□□□□ -1.34
SCFD1-219ENST00000556413 GZF1Q9H116 711 aaPredicted RBP6.71□□□□□ -1.34
SCFD1-219ENST00000556413 ERVK13-1Q9NX77 482 aa6.71□□□□□ -1.34
SCFD1-219ENST00000556413 GPR55Q9Y2T6 319 aaPredicted RBP6.71□□□□□ -1.34
SCFD1-219ENST00000556413 PCDHB12Q9Y5F1 795 aa6.71□□□□□ -1.34
SCFD1-219ENST00000556413 A0A0G2JLL6 359 aaPredicted RBP6.7□□□□□ -1.34
SCFD1-219ENST00000556413 WTIPA6NIX2 430 aaPredicted RBP6.7□□□□□ -1.34
SCFD1-219ENST00000556413 ZNF205O95201 554 aa6.7□□□□□ -1.34
SCFD1-219ENST00000556413 BMP8BP34820 402 aa6.7□□□□□ -1.34
SCFD1-219ENST00000556413 LRRFIP1Q32MZ4 808 aaKnown RBP6.7□□□□□ -1.34
SCFD1-219ENST00000556413 SLITRK4Q8IW52 837 aa6.7□□□□□ -1.34
SCFD1-219ENST00000556413 RELTQ969Z4 430 aa6.7□□□□□ -1.34
SCFD1-219ENST00000556413 DACT3Q96B18 629 aaPredicted RBP6.7□□□□□ -1.34
SCFD1-219ENST00000556413 SLC9A7Q96T83 725 aa6.7□□□□□ -1.34
SCFD1-219ENST00000556413 NT5C1AQ9BXI3 368 aa6.7□□□□□ -1.34
SCFD1-219ENST00000556413 BCL2L13Q9BXK5 485 aa6.7□□□□□ -1.34
SCFD1-219ENST00000556413 KRTAP9-3Q9BYQ3 159 aa6.7□□□□□ -1.34
SCFD1-219ENST00000556413 EPB41L4AQ9HCS5 686 aaPredicted RBP6.7□□□□□ -1.34
SCFD1-219ENST00000556413 KLHL14Q9P2G3 628 aa6.7□□□□□ -1.34
SCFD1-219ENST00000556413 FBXL21Q9UKT6 434 aa6.7□□□□□ -1.34
SCFD1-219ENST00000556413 TAF6LQ9Y6J9 622 aa6.7□□□□□ -1.34
SCFD1-219ENST00000556413 IRS4O14654 1257 aaPredicted RBP6.69□□□□□ -1.34
SCFD1-219ENST00000556413 CDR1P51861 262 aa6.69□□□□□ -1.34
SCFD1-219ENST00000556413 AUHQ13825 339 aaKnown RBP6.69□□□□□ -1.34
SCFD1-219ENST00000556413 SLCO6A1Q86UG4 719 aa6.69□□□□□ -1.34
SCFD1-219ENST00000556413 GIPC2Q8TF65 315 aa6.69□□□□□ -1.34
SCFD1-219ENST00000556413 NKD1Q969G9 470 aa6.69□□□□□ -1.34
SCFD1-219ENST00000556413 EAF1Q96JC9 268 aaPredicted RBP6.69□□□□□ -1.34
SCFD1-219ENST00000556413 CDADC1Q9BWV3 514 aa6.69□□□□□ -1.34
SCFD1-219ENST00000556413 ABLIM1O14639 778 aa6.68□□□□□ -1.34
SCFD1-219ENST00000556413 MPOP05164 745 aa6.68□□□□□ -1.34
SCFD1-219ENST00000556413 VAV1P15498 845 aa6.68□□□□□ -1.34
SCFD1-219ENST00000556413 PRKCAP17252 672 aa6.68□□□□□ -1.34
SCFD1-219ENST00000556413 ENDOUP21128 410 aaKnown RBP6.68□□□□□ -1.34
SCFD1-219ENST00000556413 ARL4AP40617 200 aa6.68□□□□□ -1.34
SCFD1-219ENST00000556413 AFF3P51826 1226 aaKnown RBP6.68□□□□□ -1.34
SCFD1-219ENST00000556413 LAPTM5Q13571 262 aa6.68□□□□□ -1.34
SCFD1-219ENST00000556413 ZNF326Q5BKZ1 582 aaKnown RBP6.68□□□□□ -1.34
SCFD1-219ENST00000556413 OLFML2BQ68BL8 750 aa6.68□□□□□ -1.34
SCFD1-219ENST00000556413 CRTC3Q6UUV7 619 aa6.68□□□□□ -1.34
SCFD1-219ENST00000556413 TMEFF1Q8IYR6 380 aa6.68□□□□□ -1.34
SCFD1-219ENST00000556413 TMEM52Q8NDY8 209 aa6.68□□□□□ -1.34
SCFD1-219ENST00000556413 MZB1Q8WU39 189 aa6.68□□□□□ -1.34
SCFD1-219ENST00000556413 AP5S1Q9NUS5 200 aa6.68□□□□□ -1.34
SCFD1-219ENST00000556413 PRR13Q9NZ81 148 aa6.68□□□□□ -1.34
SCFD1-219ENST00000556413 A0A1W2PQ45 241 aaPredicted RBP6.67□□□□□ -1.34
SCFD1-219ENST00000556413 A0A1W2PQY0 241 aa6.67□□□□□ -1.34
SCFD1-219ENST00000556413 SHOXO15266 292 aa6.67□□□□□ -1.34
SCFD1-219ENST00000556413 ACRP10323 421 aa6.67□□□□□ -1.34
SCFD1-219ENST00000556413 RAB3GAP1Q15042 981 aa6.67□□□□□ -1.34
SCFD1-219ENST00000556413 SUCOQ9UBS9 1254 aaKnown RBP6.67□□□□□ -1.34
SCFD1-219ENST00000556413 ACSL6Q9UKU0 697 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms