RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 ZNF236Q9UL36 1845 aa16.67■□□□□ 0.26
SHMT2-217ENST00000555116 IFIT3O14879 490 aaKnown RBP16.66■□□□□ 0.26
SHMT2-217ENST00000555116 HSPA4P34932 840 aa16.66■□□□□ 0.26
SHMT2-217ENST00000555116 IRF5Q13568 498 aa16.66■□□□□ 0.26
SHMT2-217ENST00000555116 MORN1Q5T089 497 aa16.66■□□□□ 0.26
SHMT2-217ENST00000555116 RIOX2Q8IUF8 465 aa16.66■□□□□ 0.26
SHMT2-217ENST00000555116 RAET1EQ8TD07 263 aa16.66■□□□□ 0.26
SHMT2-217ENST00000555116 IGDCC4Q8TDY8 1250 aa16.66■□□□□ 0.26
SHMT2-217ENST00000555116 SENP2Q9HC62 589 aa16.66■□□□□ 0.26
SHMT2-217ENST00000555116 FRMPD2Q68DX3 1309 aaPredicted RBP16.66■□□□□ 0.26
SHMT2-217ENST00000555116 MYH6P13533 1939 aa16.66■□□□□ 0.26
SHMT2-217ENST00000555116 ATP2A1O14983 1001 aa16.65■□□□□ 0.26
SHMT2-217ENST00000555116 ZBED4O75132 1171 aa16.65■□□□□ 0.26
SHMT2-217ENST00000555116 ERCC3P19447 782 aa16.65■□□□□ 0.26
SHMT2-217ENST00000555116 STAT3P40763 770 aa16.65■□□□□ 0.26
SHMT2-217ENST00000555116 USP6NLQ92738 828 aa16.65■□□□□ 0.26
SHMT2-217ENST00000555116 ARMC5Q96C12 935 aa16.65■□□□□ 0.26
SHMT2-217ENST00000555116 ANP32EQ9BTT0 268 aa16.65■□□□□ 0.26
SHMT2-217ENST00000555116 GPCPD1Q9NPB8 672 aa16.65■□□□□ 0.26
SHMT2-217ENST00000555116 PRR12Q9ULL5 1215 aa16.65■□□□□ 0.26
SHMT2-217ENST00000555116 EPB41L2O43491 1005 aaKnown RBP16.65■□□□□ 0.26
SHMT2-217ENST00000555116 FDX1P10109 184 aa16.65■□□□□ 0.26
SHMT2-217ENST00000555116 PTPREP23469 700 aa16.65■□□□□ 0.26
SHMT2-217ENST00000555116 MCM5P33992 734 aa16.65■□□□□ 0.26
SHMT2-217ENST00000555116 IKQ13123 557 aaPredicted RBP16.65■□□□□ 0.26
SHMT2-217ENST00000555116 KIAA0100Q14667 2235 aaKnown RBP16.65■□□□□ 0.26
SHMT2-217ENST00000555116 MTA3Q9BTC8 594 aa16.65■□□□□ 0.26
SHMT2-217ENST00000555116 BACH2Q9BYV9 841 aa16.65■□□□□ 0.26
SHMT2-217ENST00000555116 PLXNA1Q9UIW2 1896 aa16.64■□□□□ 0.25
SHMT2-217ENST00000555116 ERICH2A1L162 156 aa16.64■□□□□ 0.25
SHMT2-217ENST00000555116 PRC1O43663 620 aa16.64■□□□□ 0.25
SHMT2-217ENST00000555116 SLC25A27O95847 323 aa16.64■□□□□ 0.25
SHMT2-217ENST00000555116 SLC16A2P36021 539 aa16.64■□□□□ 0.25
SHMT2-217ENST00000555116 WTAPQ15007 396 aa16.64■□□□□ 0.25
SHMT2-217ENST00000555116 SART3Q15020 963 aaKnown RBP16.64■□□□□ 0.25
SHMT2-217ENST00000555116 ADCK5Q3MIX3 580 aa16.64■□□□□ 0.25
SHMT2-217ENST00000555116 TMEM67Q5HYA8 995 aa16.64■□□□□ 0.25
SHMT2-217ENST00000555116 WDR78Q5VTH9 848 aa16.64■□□□□ 0.25
SHMT2-217ENST00000555116 SOCS4Q8WXH5 440 aa16.64■□□□□ 0.25
SHMT2-217ENST00000555116 NUDT12Q9BQG2 462 aa16.64■□□□□ 0.25
SHMT2-217ENST00000555116 TEX13BQ9BXU2 312 aa16.64■□□□□ 0.25
SHMT2-217ENST00000555116 USP26Q9BXU7 913 aa16.64■□□□□ 0.25
SHMT2-217ENST00000555116 MROH8Q9H579 483 aa16.64■□□□□ 0.25
SHMT2-217ENST00000555116 GPHNQ9NQX3 736 aaPredicted RBP16.64■□□□□ 0.25
SHMT2-217ENST00000555116 BAZ2BQ9UIF8 2168 aaKnown RBP16.64■□□□□ 0.25
SHMT2-217ENST00000555116 SLC15A5A6NIM6 579 aa16.63■□□□□ 0.25
SHMT2-217ENST00000555116 ADCY3O60266 1144 aa16.63■□□□□ 0.25
SHMT2-217ENST00000555116 ZKSCAN1P17029 563 aaPredicted RBP16.63■□□□□ 0.25
SHMT2-217ENST00000555116 OAZ1P54368 228 aa16.63■□□□□ 0.25
SHMT2-217ENST00000555116 GRB14Q14449 540 aa16.63■□□□□ 0.25
SHMT2-217ENST00000555116 SLC9C1Q4G0N8 1177 aa16.63■□□□□ 0.25
SHMT2-217ENST00000555116 GPATCH4Q5T3I0 446 aaKnown RBP16.63■□□□□ 0.25
SHMT2-217ENST00000555116 SYDE2Q5VT97 1194 aa16.63■□□□□ 0.25
SHMT2-217ENST00000555116 NCAPG2Q86XI2 1143 aa16.63■□□□□ 0.25
SHMT2-217ENST00000555116 CPXCR1Q8N123 301 aa16.63■□□□□ 0.25
SHMT2-217ENST00000555116 SH3TC2Q8TF17 1288 aa16.63■□□□□ 0.25
SHMT2-217ENST00000555116 NEK1Q96PY6 1258 aa16.63■□□□□ 0.25
SHMT2-217ENST00000555116 LY9Q9HBG7 655 aa16.63■□□□□ 0.25
SHMT2-217ENST00000555116 CWC22Q9HCG8 908 aaKnown RBP16.63■□□□□ 0.25
SHMT2-217ENST00000555116 RAVER2Q9HCJ3 691 aaKnown RBP16.63■□□□□ 0.25
SHMT2-217ENST00000555116 RIPK3Q9Y572 518 aa16.63■□□□□ 0.25
SHMT2-217ENST00000555116 SNX14Q9Y5W7 946 aa16.63■□□□□ 0.25
SHMT2-217ENST00000555116 ZNF536O15090 1300 aa16.63■□□□□ 0.25
SHMT2-217ENST00000555116 GOLGA8HP0CJ92 632 aa16.63■□□□□ 0.25
SHMT2-217ENST00000555116 GRK4P32298 578 aa16.63■□□□□ 0.25
SHMT2-217ENST00000555116 SNAP25P60880 206 aa16.63■□□□□ 0.25
SHMT2-217ENST00000555116 KRT32Q14532 448 aa16.63■□□□□ 0.25
SHMT2-217ENST00000555116 SNRNP48Q6IEG0 339 aaKnown RBP16.63■□□□□ 0.25
SHMT2-217ENST00000555116 SLAIN1Q8ND83 568 aa16.63■□□□□ 0.25
SHMT2-217ENST00000555116 TMEM87BQ96K49 555 aa16.63■□□□□ 0.25
SHMT2-217ENST00000555116 CTDP1Q9Y5B0 961 aaPredicted RBP16.63■□□□□ 0.25
SHMT2-217ENST00000555116 SH2B2O14492 632 aaPredicted RBP16.62■□□□□ 0.25
SHMT2-217ENST00000555116 ELNP15502 786 aa16.62■□□□□ 0.25
SHMT2-217ENST00000555116 CYP2B6P20813 491 aa16.62■□□□□ 0.25
SHMT2-217ENST00000555116 COPB2P35606 906 aa16.62■□□□□ 0.25
SHMT2-217ENST00000555116 EXOSC10Q01780 885 aaKnown RBP16.62■□□□□ 0.25
SHMT2-217ENST00000555116 MAP2K5Q13163 448 aa16.62■□□□□ 0.25
SHMT2-217ENST00000555116 ASPRV1Q53RT3 343 aa16.62■□□□□ 0.25
SHMT2-217ENST00000555116 PXYLP1Q8TE99 480 aa16.62■□□□□ 0.25
SHMT2-217ENST00000555116 ZNF333Q96JL9 665 aa16.62■□□□□ 0.25
SHMT2-217ENST00000555116 RANBP17Q9H2T7 1088 aaKnown RBP16.62■□□□□ 0.25
SHMT2-217ENST00000555116 IVNS1ABPQ9Y6Y0 642 aa16.62■□□□□ 0.25
SHMT2-217ENST00000555116 RBBP6Q7Z6E9 1792 aaKnown RBP16.62■□□□□ 0.25
SHMT2-217ENST00000555116 WDR19Q8NEZ3 1342 aa16.61■□□□□ 0.25
SHMT2-217ENST00000555116 CCDC85CA6NKD9 419 aa16.61■□□□□ 0.25
SHMT2-217ENST00000555116 STRNO43815 780 aa16.61■□□□□ 0.25
SHMT2-217ENST00000555116 PARP1P09874 1014 aaKnown RBP16.61■□□□□ 0.25
SHMT2-217ENST00000555116 XRCC5P13010 732 aaKnown RBP16.61■□□□□ 0.25
SHMT2-217ENST00000555116 CPVLQ9H3G5 476 aa16.61■□□□□ 0.25
SHMT2-217ENST00000555116 RGS2P41220 211 aa16.61■□□□□ 0.25
SHMT2-217ENST00000555116 TROAPQ12815 778 aa16.61■□□□□ 0.25
SHMT2-217ENST00000555116 DHX32Q7L7V1 743 aaKnown RBP16.61■□□□□ 0.25
SHMT2-217ENST00000555116 NBPF11Q86T75 865 aa16.61■□□□□ 0.25
SHMT2-217ENST00000555116 ABRAQ8N0Z2 381 aa16.61■□□□□ 0.25
SHMT2-217ENST00000555116 STAG2Q8N3U4 1231 aa16.61■□□□□ 0.25
SHMT2-217ENST00000555116 AGBL1Q96MI9 1066 aa16.61■□□□□ 0.25
SHMT2-217ENST00000555116 LRRC2Q9BYS8 371 aa16.61■□□□□ 0.25
SHMT2-217ENST00000555116 HOXC6P09630 235 aa16.6■□□□□ 0.25
SHMT2-217ENST00000555116 ADORA2AP29274 412 aa16.6■□□□□ 0.25
SHMT2-217ENST00000555116 LIFRP42702 1097 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms