RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 CCDC144AA2RUR9 1427 aa5.23□□□□□ -1.57
LIMA1-208ENST00000551691 SBNO1A3KN83 1393 aa5.22□□□□□ -1.57
LIMA1-208ENST00000551691 ADCY9O60503 1353 aa5.22□□□□□ -1.57
LIMA1-208ENST00000551691 RLBP1P12271 317 aa5.22□□□□□ -1.57
LIMA1-208ENST00000551691 ATF4P18848 351 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-208ENST00000551691 GBP2P32456 591 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-208ENST00000551691 ZNF157P51786 506 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-208ENST00000551691 FZD5Q13467 585 aa5.22□□□□□ -1.57
LIMA1-208ENST00000551691 MCF2L2Q86YR7 1114 aa5.22□□□□□ -1.57
LIMA1-208ENST00000551691 CCNJLQ8IV13 435 aa5.22□□□□□ -1.57
LIMA1-208ENST00000551691 EZH1Q92800 747 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-208ENST00000551691 TRIM56Q9BRZ2 755 aaKnown RBP5.22□□□□□ -1.57
LIMA1-208ENST00000551691 METTL22Q9BUU2 404 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-208ENST00000551691 YIPF2Q9BWQ6 316 aa5.22□□□□□ -1.57
LIMA1-208ENST00000551691 ZC3H12CQ9C0D7 883 aaKnown RBP5.22□□□□□ -1.57
LIMA1-208ENST00000551691 PAK6Q9NQU5 681 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-208ENST00000551691 KBTBD4Q9NVX7 518 aa5.22□□□□□ -1.57
LIMA1-208ENST00000551691 BSDC1Q9NW68 430 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-208ENST00000551691 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.22□□□□□ -1.57
LIMA1-208ENST00000551691 AKAP2Q9Y2D5 859 aa5.22□□□□□ -1.57
LIMA1-208ENST00000551691 TNRC18O15417 2968 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-208ENST00000551691 RGPD8O14715 1765 aaPredicted RBP5.21□□□□□ -1.57
LIMA1-208ENST00000551691 ABCA3Q99758 1704 aa5.21□□□□□ -1.58
LIMA1-208ENST00000551691 MINDY4BA8MYZ0 360 aa5.21□□□□□ -1.58
LIMA1-208ENST00000551691 PRNPP04156 253 aa5.21□□□□□ -1.58
LIMA1-208ENST00000551691 POLD1P28340 1107 aa5.21□□□□□ -1.58
LIMA1-208ENST00000551691 ASPAP45381 313 aa5.21□□□□□ -1.58
LIMA1-208ENST00000551691 GJA8P48165 433 aa5.21□□□□□ -1.58
LIMA1-208ENST00000551691 SAFB2Q14151 953 aaKnown RBP eCLIP5.21□□□□□ -1.58
LIMA1-208ENST00000551691 PDE3AQ14432 1141 aa5.21□□□□□ -1.58
LIMA1-208ENST00000551691 RNF187Q5TA31 235 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-208ENST00000551691 DUSP27Q5VZP5 1158 aa5.21□□□□□ -1.58
LIMA1-208ENST00000551691 DTHD1Q6ZMT9 781 aa5.21□□□□□ -1.58
LIMA1-208ENST00000551691 CBLL1Q75N03 491 aa5.21□□□□□ -1.58
LIMA1-208ENST00000551691 FBXL18Q96ME1 805 aa5.21□□□□□ -1.58
LIMA1-208ENST00000551691 NOC4LQ9BVI4 516 aaKnown RBP5.21□□□□□ -1.58
LIMA1-208ENST00000551691 COL14A1Q05707 1796 aaKnown RBP5.21□□□□□ -1.58
LIMA1-208ENST00000551691 HFM1A2PYH4 1435 aa5.21□□□□□ -1.58
LIMA1-208ENST00000551691 ARHGEF10O15013 1369 aa5.2□□□□□ -1.58
LIMA1-208ENST00000551691 ANKRD30AQ9BXX3 1397 aa5.2□□□□□ -1.58
LIMA1-208ENST00000551691 FGRP09769 529 aa5.2□□□□□ -1.58
LIMA1-208ENST00000551691 FCGRTP55899 365 aa5.2□□□□□ -1.58
LIMA1-208ENST00000551691 RBL2Q08999 1139 aa5.2□□□□□ -1.58
LIMA1-208ENST00000551691 BNIP3Q12983 259 aa5.2□□□□□ -1.58
LIMA1-208ENST00000551691 MAP7Q14244 749 aa5.2□□□□□ -1.58
LIMA1-208ENST00000551691 GALNT12Q8IXK2 581 aa5.2□□□□□ -1.58
LIMA1-208ENST00000551691 FAM181AQ8N9Y4 354 aa5.2□□□□□ -1.58
LIMA1-208ENST00000551691 ACSBG1Q96GR2 724 aa5.2□□□□□ -1.58
LIMA1-208ENST00000551691 SEC16BQ96JE7 1060 aa5.2□□□□□ -1.58
LIMA1-208ENST00000551691 CORO1BQ9BR76 489 aa5.2□□□□□ -1.58
LIMA1-208ENST00000551691 ACSS3Q9H6R3 686 aa5.2□□□□□ -1.58
LIMA1-208ENST00000551691 STRIP2Q9ULQ0 834 aa5.2□□□□□ -1.58
LIMA1-208ENST00000551691 DAPK1P53355 1430 aa5.2□□□□□ -1.58
LIMA1-208ENST00000551691 E9PCH4 1651 aa5.19□□□□□ -1.58
LIMA1-208ENST00000551691 hCG_2014768A0A024R1R8 64 aa5.19□□□□□ -1.58
LIMA1-208ENST00000551691 FOXN1O15353 648 aa5.19□□□□□ -1.58
LIMA1-208ENST00000551691 CYP11A1P05108 521 aa5.19□□□□□ -1.58
LIMA1-208ENST00000551691 LIG1P18858 919 aa5.19□□□□□ -1.58
LIMA1-208ENST00000551691 CD96P40200 585 aa5.19□□□□□ -1.58
LIMA1-208ENST00000551691 NASPP49321 788 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-208ENST00000551691 CDK5R2Q13319 367 aa5.19□□□□□ -1.58
LIMA1-208ENST00000551691 GRM2Q14416 872 aa5.19□□□□□ -1.58
LIMA1-208ENST00000551691 DDB1Q16531 1140 aa5.19□□□□□ -1.58
LIMA1-208ENST00000551691 MAP3K11Q16584 847 aa5.19□□□□□ -1.58
LIMA1-208ENST00000551691 CPSF6Q16630 551 aaKnown RBP eCLIP5.19□□□□□ -1.58
LIMA1-208ENST00000551691 TAF7LQ5H9L4 462 aa5.19□□□□□ -1.58
LIMA1-208ENST00000551691 SNAP47Q5SQN1 464 aa5.19□□□□□ -1.58
LIMA1-208ENST00000551691 NBPF6Q5VWK0 638 aa5.19□□□□□ -1.58
LIMA1-208ENST00000551691 ERMP1Q7Z2K6 904 aa5.19□□□□□ -1.58
LIMA1-208ENST00000551691 SPRED2Q7Z698 418 aa5.19□□□□□ -1.58
LIMA1-208ENST00000551691 WDR89Q96FK6 387 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-208ENST00000551691 NBPF4Q96M43 638 aa5.19□□□□□ -1.58
LIMA1-208ENST00000551691 SRPK1Q96SB4 655 aaKnown RBP5.19□□□□□ -1.58
LIMA1-208ENST00000551691 SLKQ9H2G2 1235 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-208ENST00000551691 PIF1Q9H611 641 aa5.19□□□□□ -1.58
LIMA1-208ENST00000551691 ZFYVE1Q9HBF4 777 aa5.19□□□□□ -1.58
LIMA1-208ENST00000551691 COPRSQ9NQ92 184 aa5.19□□□□□ -1.58
LIMA1-208ENST00000551691 C1GALT1Q9NS00 363 aa5.19□□□□□ -1.58
LIMA1-208ENST00000551691 PPP1R9AQ9ULJ8 1098 aa5.19□□□□□ -1.58
LIMA1-208ENST00000551691 EFR3BQ9Y2G0 817 aa5.19□□□□□ -1.58
LIMA1-208ENST00000551691 RRBP1Q9P2E9 1410 aaKnown RBP5.19□□□□□ -1.58
LIMA1-208ENST00000551691 WDR90Q96KV7 1748 aa5.19□□□□□ -1.58
LIMA1-208ENST00000551691 SBF2Q86WG5 1849 aa5.18□□□□□ -1.58
LIMA1-208ENST00000551691 CROCC2H7BZ55 1655 aa5.18□□□□□ -1.58
LIMA1-208ENST00000551691 SSH2Q76I76 1423 aa5.18□□□□□ -1.58
LIMA1-208ENST00000551691 ARID1BQ8NFD5 2236 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-208ENST00000551691 CCDC85CA6NKD9 419 aa5.18□□□□□ -1.58
LIMA1-208ENST00000551691 F6X3S4 739 aa5.18□□□□□ -1.58
LIMA1-208ENST00000551691 AOC2O75106 756 aa5.18□□□□□ -1.58
LIMA1-208ENST00000551691 C8AP07357 584 aa5.18□□□□□ -1.58
LIMA1-208ENST00000551691 XRCC5P13010 732 aaKnown RBP5.18□□□□□ -1.58
LIMA1-208ENST00000551691 EIF4A3P38919 411 aaKnown RBP5.18□□□□□ -1.58
LIMA1-208ENST00000551691 ANAPC15P60006 121 aa5.18□□□□□ -1.58
LIMA1-208ENST00000551691 PLCL1Q15111 1095 aa5.18□□□□□ -1.58
LIMA1-208ENST00000551691 ZNF648Q5T619 568 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-208ENST00000551691 SMIM5Q71RC9 77 aa5.18□□□□□ -1.58
LIMA1-208ENST00000551691 ZCRB1Q8TBF4 217 aaKnown RBP5.18□□□□□ -1.58
LIMA1-208ENST00000551691 ABHD8Q96I13 439 aa5.18□□□□□ -1.58
LIMA1-208ENST00000551691 POLR3GLQ9BT43 218 aa5.18□□□□□ -1.58
LIMA1-208ENST00000551691 WDR18Q9BV38 432 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms