RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	CFDP1	Q9UEE9	299 aa	Predicted RBP	3.8	□□□□□ -1.8
PTCH1-223	ENST00000551623	TRAK1	Q9UPV9	953 aa		3.8	□□□□□ -1.8
PTCH1-223	ENST00000551623	YBX2	Q9Y2T7	364 aa	Known RBP	3.8	□□□□□ -1.8
PTCH1-223	ENST00000551623	IRAK3	Q9Y616	596 aa		3.8	□□□□□ -1.8
PTCH1-223	ENST00000551623	LMTK2	Q8IWU2	1503 aa		3.8	□□□□□ -1.8
PTCH1-223	ENST00000551623	DISP2	A7MBM2	1401 aa		3.79	□□□□□ -1.8
PTCH1-223	ENST00000551623	PLEKHG1	Q9ULL1	1385 aa		3.79	□□□□□ -1.8
PTCH1-223	ENST00000551623	CPNE3	O75131	537 aa	Known RBP	3.79	□□□□□ -1.8
PTCH1-223	ENST00000551623	GADD45B	O75293	160 aa	Predicted RBP	3.79	□□□□□ -1.8
PTCH1-223	ENST00000551623	PDE6B	P35913	854 aa		3.79	□□□□□ -1.8
PTCH1-223	ENST00000551623	ZXDA	P98168	799 aa		3.79	□□□□□ -1.8
PTCH1-223	ENST00000551623	TNK2	Q07912	1038 aa		3.79	□□□□□ -1.8
PTCH1-223	ENST00000551623	ZNF252P-AS1	Q0IIN9	211 aa		3.79	□□□□□ -1.8
PTCH1-223	ENST00000551623	ZNF746	Q6NUN9	644 aa	Predicted RBP	3.79	□□□□□ -1.8
PTCH1-223	ENST00000551623	HHIPL2	Q6UWX4	724 aa		3.79	□□□□□ -1.8
PTCH1-223	ENST00000551623	DTHD1	Q6ZMT9	781 aa		3.79	□□□□□ -1.8
PTCH1-223	ENST00000551623	OXR1	Q8N573	874 aa		3.79	□□□□□ -1.8
PTCH1-223	ENST00000551623	SYT8	Q8NBV8	401 aa		3.79	□□□□□ -1.8
PTCH1-223	ENST00000551623	EMILIN2	Q9BXX0	1053 aa		3.79	□□□□□ -1.8
PTCH1-223	ENST00000551623	PIK3C2B	O00750	1634 aa		3.79	□□□□□ -1.8
PTCH1-223	ENST00000551623	ADGRB3	O60242	1522 aa		3.79	□□□□□ -1.8
PTCH1-223	ENST00000551623	CHD2	O14647	1828 aa	Known RBP	3.79	□□□□□ -1.8
PTCH1-223	ENST00000551623	NOS1	P29475	1434 aa		3.78	□□□□□ -1.8
PTCH1-223	ENST00000551623	MST1R	Q04912	1400 aa		3.78	□□□□□ -1.8
PTCH1-223	ENST00000551623	CEP162	Q5TB80	1403 aa		3.78	□□□□□ -1.8
PTCH1-223	ENST00000551623	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	3.78	□□□□□ -1.8
PTCH1-223	ENST00000551623	MTUS2	Q5JR59	1369 aa		3.78	□□□□□ -1.8
PTCH1-223	ENST00000551623	CCNB3	Q8WWL7	1395 aa		3.78	□□□□□ -1.8
PTCH1-223	ENST00000551623	FITM1	A5D6W6	292 aa		3.78	□□□□□ -1.8
PTCH1-223	ENST00000551623	TMEM88B	A6NKF7	163 aa		3.78	□□□□□ -1.8
PTCH1-223	ENST00000551623	ZGLP1	P0C6A0	271 aa		3.78	□□□□□ -1.8
PTCH1-223	ENST00000551623	NME2	P22392	152 aa		3.78	□□□□□ -1.8
PTCH1-223	ENST00000551623	KIR3DL1	P43629	444 aa		3.78	□□□□□ -1.8
PTCH1-223	ENST00000551623	SF3B2	Q13435	895 aa	Known RBP	3.78	□□□□□ -1.8
PTCH1-223	ENST00000551623	NR0B2	Q15466	257 aa		3.78	□□□□□ -1.8
PTCH1-223	ENST00000551623	VMAC	Q2NL98	169 aa		3.78	□□□□□ -1.8
PTCH1-223	ENST00000551623	MPRIP	Q6WCQ1	1025 aa		3.78	□□□□□ -1.8
PTCH1-223	ENST00000551623	FRMD5	Q7Z6J6	570 aa		3.78	□□□□□ -1.8
PTCH1-223	ENST00000551623	CREG2	Q8IUH2	290 aa		3.78	□□□□□ -1.8
PTCH1-223	ENST00000551623	LRRC59	Q96AG4	307 aa	Known RBP	3.78	□□□□□ -1.8
PTCH1-223	ENST00000551623	C1orf115	Q9H7X2	142 aa		3.78	□□□□□ -1.8
PTCH1-223	ENST00000551623	LUC7L	Q9NQ29	371 aa	Known RBP	3.78	□□□□□ -1.8
PTCH1-223	ENST00000551623	MBD1	Q9UIS9	605 aa	Predicted RBP	3.78	□□□□□ -1.8
PTCH1-223	ENST00000551623	TRPC5	Q9UL62	973 aa	Predicted RBP	3.78	□□□□□ -1.8
PTCH1-223	ENST00000551623	TBX22	Q9Y458	520 aa		3.78	□□□□□ -1.8
PTCH1-223	ENST00000551623	MYOM2	P54296	1465 aa		3.78	□□□□□ -1.8
PTCH1-223	ENST00000551623	COL22A1	Q8NFW1	1626 aa	Predicted RBP	3.77	□□□□□ -1.81
PTCH1-223	ENST00000551623	ZNF644	Q9H582	1327 aa	Predicted RBP	3.77	□□□□□ -1.81
PTCH1-223	ENST00000551623	YY1	P25490	414 aa		3.77	□□□□□ -1.81
PTCH1-223	ENST00000551623	FKBP4	Q02790	459 aa	Known RBP eCLIP	3.77	□□□□□ -1.81
PTCH1-223	ENST00000551623	ORC1	Q13415	861 aa		3.77	□□□□□ -1.81
PTCH1-223	ENST00000551623	GRM2	Q14416	872 aa		3.77	□□□□□ -1.81
PTCH1-223	ENST00000551623	PHLDB3	Q6NSJ2	640 aa		3.77	□□□□□ -1.81
PTCH1-223	ENST00000551623	MFSD2A	Q8NA29	543 aa		3.77	□□□□□ -1.81
PTCH1-223	ENST00000551623	RIN3	Q8TB24	985 aa		3.77	□□□□□ -1.81
PTCH1-223	ENST00000551623	ZNF507	Q8TCN5	953 aa		3.77	□□□□□ -1.81
PTCH1-223	ENST00000551623	PBXIP1	Q96AQ6	731 aa		3.77	□□□□□ -1.81
PTCH1-223	ENST00000551623	COX4I2	Q96KJ9	171 aa		3.77	□□□□□ -1.81
PTCH1-223	ENST00000551623	CBX8	Q9HC52	389 aa		3.77	□□□□□ -1.81
PTCH1-223	ENST00000551623	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	3.77	□□□□□ -1.81
PTCH1-223	ENST00000551623	SRRD	Q9UH36	339 aa		3.77	□□□□□ -1.81
PTCH1-223	ENST00000551623	PALD1	Q9ULE6	856 aa		3.77	□□□□□ -1.81
PTCH1-223	ENST00000551623	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	3.77	□□□□□ -1.81
PTCH1-223	ENST00000551623	RALGAPB	Q86X10	1494 aa		3.77	□□□□□ -1.81
PTCH1-223	ENST00000551623	ADAMTS13	Q76LX8	1427 aa		3.77	□□□□□ -1.81
PTCH1-223	ENST00000551623	PRAG1	Q86YV5	1406 aa		3.77	□□□□□ -1.81
PTCH1-223	ENST00000551623	TRPM2	O94759	1503 aa		3.76	□□□□□ -1.81
PTCH1-223	ENST00000551623	EHBP1L1	Q8N3D4	1523 aa		3.76	□□□□□ -1.81
PTCH1-223	ENST00000551623	RPRD2	Q5VT52	1461 aa	Known RBP	3.76	□□□□□ -1.81
PTCH1-223	ENST00000551623	WASH4P	A8MWX3	477 aa		3.76	□□□□□ -1.81
PTCH1-223	ENST00000551623	RBAK-RBAKDN	I3L0D1	243 aa		3.76	□□□□□ -1.81
PTCH1-223	ENST00000551623	TNFRSF1A	P19438	455 aa		3.76	□□□□□ -1.81
PTCH1-223	ENST00000551623	FCGRT	P55899	365 aa		3.76	□□□□□ -1.81
PTCH1-223	ENST00000551623	SLBP	Q14493	270 aa	Known RBP eCLIP	3.76	□□□□□ -1.81
PTCH1-223	ENST00000551623	LETMD1	Q6P1Q0	360 aa		3.76	□□□□□ -1.81
PTCH1-223	ENST00000551623	PIWIL2	Q8TC59	973 aa	Known RBP	3.76	□□□□□ -1.81
PTCH1-223	ENST00000551623	CCDC74A	Q96AQ1	378 aa		3.76	□□□□□ -1.81
PTCH1-223	ENST00000551623	C8orf37	Q96NL8	207 aa		3.76	□□□□□ -1.81
PTCH1-223	ENST00000551623	FBRS	Q9HAH7	460 aa		3.76	□□□□□ -1.81
PTCH1-223	ENST00000551623	ERBIN	Q96RT1	1412 aa		3.76	□□□□□ -1.81
PTCH1-223	ENST00000551623	XRN1	Q8IZH2	1706 aa	Known RBP	3.75	□□□□□ -1.81
PTCH1-223	ENST00000551623	SLIT2	O94813	1529 aa		3.75	□□□□□ -1.81
PTCH1-223	ENST00000551623	DUOX2	Q9NRD8	1548 aa		3.75	□□□□□ -1.81
PTCH1-223	ENST00000551623	OR14I1	A6ND48	311 aa		3.75	□□□□□ -1.81
PTCH1-223	ENST00000551623	CILP	O75339	1184 aa		3.75	□□□□□ -1.81
PTCH1-223	ENST00000551623	TRIM37	O94972	964 aa		3.75	□□□□□ -1.81
PTCH1-223	ENST00000551623	CYP7A1	P22680	504 aa		3.75	□□□□□ -1.81
PTCH1-223	ENST00000551623	TPP2	P29144	1249 aa	Predicted RBP	3.75	□□□□□ -1.81
PTCH1-223	ENST00000551623	CAP2	P40123	477 aa		3.75	□□□□□ -1.81
PTCH1-223	ENST00000551623	EPHB3	P54753	998 aa		3.75	□□□□□ -1.81
PTCH1-223	ENST00000551623	SRSF3	P84103	164 aa	Known RBP	3.75	□□□□□ -1.81
PTCH1-223	ENST00000551623	IDI1	Q13907	227 aa		3.75	□□□□□ -1.81
PTCH1-223	ENST00000551623	RTP5	Q14D33	572 aa		3.75	□□□□□ -1.81
PTCH1-223	ENST00000551623	SNX17	Q15036	470 aa		3.75	□□□□□ -1.81
PTCH1-223	ENST00000551623	GAB4	Q2WGN9	574 aa		3.75	□□□□□ -1.81
PTCH1-223	ENST00000551623	SLC16A11	Q8NCK7	471 aa		3.75	□□□□□ -1.81
PTCH1-223	ENST00000551623	SLC52A1	Q9NWF4	448 aa		3.75	□□□□□ -1.81
PTCH1-223	ENST00000551623	GPR160	Q9UJ42	338 aa		3.75	□□□□□ -1.81
PTCH1-223	ENST00000551623	CNOT11	Q9UKZ1	510 aa	Known RBP	3.75	□□□□□ -1.81
PTCH1-223	ENST00000551623	ADGRL3	Q9HAR2	1447 aa		3.75	□□□□□ -1.81

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