RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 NUP88Q99567 741 aaPredicted RBP14.58□□□□□ -0.08
VPS33A-207ENST00000542790 ZKSCAN3Q9BRR0 538 aa14.58□□□□□ -0.08
VPS33A-207ENST00000542790 LOC285556D6RIA3 1793 aa14.57□□□□□ -0.08
VPS33A-207ENST00000542790 TNPO2O14787 897 aaKnown RBP14.57□□□□□ -0.08
VPS33A-207ENST00000542790 CAP1Q01518 475 aa14.57□□□□□ -0.08
VPS33A-207ENST00000542790 Q3C1V9 767 aa14.57□□□□□ -0.08
VPS33A-207ENST00000542790 POTEEQ6S8J3 1075 aa14.57□□□□□ -0.08
VPS33A-207ENST00000542790 PRPF38AQ8NAV1 312 aaKnown RBP14.57□□□□□ -0.08
VPS33A-207ENST00000542790 COA7Q96BR5 231 aa14.57□□□□□ -0.08
VPS33A-207ENST00000542790 SLF1Q9BQI6 1058 aa14.57□□□□□ -0.08
VPS33A-207ENST00000542790 FBXO28Q9NVF7 368 aa14.57□□□□□ -0.08
VPS33A-207ENST00000542790 FEM1BQ9UK73 627 aa14.57□□□□□ -0.08
VPS33A-207ENST00000542790 PPP1R9AQ9ULJ8 1098 aa14.57□□□□□ -0.08
VPS33A-207ENST00000542790 ADAMTS5Q9UNA0 930 aa14.57□□□□□ -0.08
VPS33A-207ENST00000542790 PTPN22Q9Y2R2 807 aa14.57□□□□□ -0.08
VPS33A-207ENST00000542790 TAF6LQ9Y6J9 622 aa14.57□□□□□ -0.08
VPS33A-207ENST00000542790 PEX10O60683 326 aa14.56□□□□□ -0.08
VPS33A-207ENST00000542790 CNMDO75829 334 aa14.56□□□□□ -0.08
VPS33A-207ENST00000542790 ZKSCAN1P17029 563 aaPredicted RBP14.56□□□□□ -0.08
VPS33A-207ENST00000542790 CTGFP29279 349 aa14.56□□□□□ -0.08
VPS33A-207ENST00000542790 MAPK4P31152 587 aa14.56□□□□□ -0.08
VPS33A-207ENST00000542790 SART3Q15020 963 aaKnown RBP14.56□□□□□ -0.08
VPS33A-207ENST00000542790 STOX1Q6ZVD7 989 aa14.56□□□□□ -0.08
VPS33A-207ENST00000542790 ENAHQ8N8S7 591 aaPredicted RBP14.56□□□□□ -0.08
VPS33A-207ENST00000542790 CHURC1Q8WUH1 139 aa14.56□□□□□ -0.08
VPS33A-207ENST00000542790 DCAF4Q8WV16 495 aa14.56□□□□□ -0.08
VPS33A-207ENST00000542790 ATG4CQ96DT6 458 aa14.56□□□□□ -0.08
VPS33A-207ENST00000542790 KAT14Q9H8E8 782 aa14.56□□□□□ -0.08
VPS33A-207ENST00000542790 BTBD7Q9P203 1132 aa14.56□□□□□ -0.08
VPS33A-207ENST00000542790 SRRDQ9UH36 339 aa14.56□□□□□ -0.08
VPS33A-207ENST00000542790 ISY1Q9ULR0 285 aaKnown RBP14.56□□□□□ -0.08
VPS33A-207ENST00000542790 TNKSO95271 1327 aa14.56□□□□□ -0.08
VPS33A-207ENST00000542790 ERICH2A1L162 156 aa14.55□□□□□ -0.08
VPS33A-207ENST00000542790 TMEM232C9JQI7 657 aa14.55□□□□□ -0.08
VPS33A-207ENST00000542790 VWA5AO00534 786 aa14.55□□□□□ -0.08
VPS33A-207ENST00000542790 EPB41L2O43491 1005 aaKnown RBP14.55□□□□□ -0.08
VPS33A-207ENST00000542790 STAT2P52630 851 aa14.55□□□□□ -0.08
VPS33A-207ENST00000542790 CYB5R4Q7L1T6 521 aa14.55□□□□□ -0.08
VPS33A-207ENST00000542790 FAM160B2Q86V87 743 aa14.55□□□□□ -0.08
VPS33A-207ENST00000542790 MTMR7Q9Y216 660 aa14.55□□□□□ -0.08
VPS33A-207ENST00000542790 IFIT3O14879 490 aaKnown RBP14.54□□□□□ -0.08
VPS33A-207ENST00000542790 PLA2G6O60733 806 aa14.54□□□□□ -0.08
VPS33A-207ENST00000542790 EIF5BO60841 1220 aaKnown RBP14.54□□□□□ -0.08
VPS33A-207ENST00000542790 ZBED4O75132 1171 aa14.54□□□□□ -0.08
VPS33A-207ENST00000542790 FDX1P10109 184 aa14.54□□□□□ -0.08
VPS33A-207ENST00000542790 MCM5P33992 734 aa14.54□□□□□ -0.08
VPS33A-207ENST00000542790 IKQ13123 557 aaPredicted RBP14.54□□□□□ -0.08
VPS33A-207ENST00000542790 KRT32Q14532 448 aa14.54□□□□□ -0.08
VPS33A-207ENST00000542790 CCDC96Q2M329 555 aa14.54□□□□□ -0.08
VPS33A-207ENST00000542790 TSGA10IPQ3SY00 556 aa14.54□□□□□ -0.08
VPS33A-207ENST00000542790 IFIT1BQ5T764 474 aaKnown RBP14.54□□□□□ -0.08
VPS33A-207ENST00000542790 LCE2DQ5TA82 110 aaPredicted RBP14.54□□□□□ -0.08
VPS33A-207ENST00000542790 KCTD1Q719H9 257 aa14.54□□□□□ -0.08
VPS33A-207ENST00000542790 MB21D2Q8IYB1 491 aaPredicted RBP14.54□□□□□ -0.08
VPS33A-207ENST00000542790 PNMA1Q8ND90 353 aa14.54□□□□□ -0.08
VPS33A-207ENST00000542790 KIFC2Q96AC6 838 aa14.54□□□□□ -0.08
VPS33A-207ENST00000542790 CHMP4CQ96CF2 233 aa14.54□□□□□ -0.08
VPS33A-207ENST00000542790 MTA3Q9BTC8 594 aa14.54□□□□□ -0.08
VPS33A-207ENST00000542790 SPATC1LQ9H0A9 340 aa14.54□□□□□ -0.08
VPS33A-207ENST00000542790 CWC22Q9HCG8 908 aaKnown RBP14.54□□□□□ -0.08
VPS33A-207ENST00000542790 CTDP1Q9Y5B0 961 aaPredicted RBP14.54□□□□□ -0.08
VPS33A-207ENST00000542790 PTPRFP10586 1907 aa14.54□□□□□ -0.08
VPS33A-207ENST00000542790 GREB1LQ9C091 1923 aaPredicted RBP14.54□□□□□ -0.08
VPS33A-207ENST00000542790 SNHG28P0DPA3 235 aa14.53□□□□□ -0.08
VPS33A-207ENST00000542790 PDHBP11177 359 aa14.53□□□□□ -0.08
VPS33A-207ENST00000542790 HSPA4P34932 840 aa14.53□□□□□ -0.08
VPS33A-207ENST00000542790 PRKCZQ05513 592 aa14.53□□□□□ -0.08
VPS33A-207ENST00000542790 PLS1Q14651 629 aa14.53□□□□□ -0.08
VPS33A-207ENST00000542790 TMEM132BQ14DG7 1078 aa14.53□□□□□ -0.08
VPS33A-207ENST00000542790 SEC23AQ15436 765 aa14.53□□□□□ -0.08
VPS33A-207ENST00000542790 PLEKHH3Q7Z736 793 aa14.53□□□□□ -0.08
VPS33A-207ENST00000542790 SHCBP1Q8NEM2 672 aa14.53□□□□□ -0.08
VPS33A-207ENST00000542790 RAET1EQ8TD07 263 aa14.53□□□□□ -0.08
VPS33A-207ENST00000542790 ABHD8Q96I13 439 aa14.53□□□□□ -0.08
VPS33A-207ENST00000542790 MOV10L1Q9BXT6 1211 aaKnown RBP14.53□□□□□ -0.08
VPS33A-207ENST00000542790 PORCNQ9H237 461 aa14.53□□□□□ -0.08
VPS33A-207ENST00000542790 MROH8Q9H579 483 aa14.53□□□□□ -0.08
VPS33A-207ENST00000542790 HPS5Q9UPZ3 1129 aa14.53□□□□□ -0.08
VPS33A-207ENST00000542790 PRC1O43663 620 aa14.52□□□□□ -0.09
VPS33A-207ENST00000542790 PPP1R37O75864 691 aa14.52□□□□□ -0.09
VPS33A-207ENST00000542790 SLC25A27O95847 323 aa14.52□□□□□ -0.09
VPS33A-207ENST00000542790 COPB2P35606 906 aa14.52□□□□□ -0.09
VPS33A-207ENST00000542790 STAT3P40763 770 aa14.52□□□□□ -0.09
VPS33A-207ENST00000542790 FLT3LGP49771 235 aa14.52□□□□□ -0.09
VPS33A-207ENST00000542790 ZNF543Q08ER8 600 aa14.52□□□□□ -0.09
VPS33A-207ENST00000542790 WTAPQ15007 396 aa14.52□□□□□ -0.09
VPS33A-207ENST00000542790 TMEM67Q5HYA8 995 aa14.52□□□□□ -0.09
VPS33A-207ENST00000542790 GPATCH4Q5T3I0 446 aaKnown RBP14.52□□□□□ -0.09
VPS33A-207ENST00000542790 WDR78Q5VTH9 848 aa14.52□□□□□ -0.09
VPS33A-207ENST00000542790 CHST3Q7LGC8 479 aa14.52□□□□□ -0.09
VPS33A-207ENST00000542790 GPR142Q7Z601 462 aa14.52□□□□□ -0.09
VPS33A-207ENST00000542790 REPS2Q8NFH8 660 aa14.52□□□□□ -0.09
VPS33A-207ENST00000542790 KCNB2Q92953 911 aa14.52□□□□□ -0.09
VPS33A-207ENST00000542790 NEK1Q96PY6 1258 aa14.52□□□□□ -0.09
VPS33A-207ENST00000542790 SLC38A10Q9HBR0 1119 aa14.52□□□□□ -0.09
VPS33A-207ENST00000542790 PTCH2Q9Y6C5 1203 aa14.52□□□□□ -0.09
VPS33A-207ENST00000542790 ATP2A1O14983 1001 aa14.51□□□□□ -0.09
VPS33A-207ENST00000542790 STRNO43815 780 aa14.51□□□□□ -0.09
VPS33A-207ENST00000542790 HMGB1P09429 215 aaKnown RBP14.51□□□□□ -0.09
VPS33A-207ENST00000542790 ERCC3P19447 782 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms