RNA–Protein interactions for RNA: ENST00000541963.5

CPSF7-220, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 4 BASIC

Gene CPSF7, Length 549 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-220ENST00000541963 SOX9P48436 509 aa7.14□□□□□ -1.27
CPSF7-220ENST00000541963 EIF4A2Q14240 407 aaKnown RBP7.14□□□□□ -1.27
CPSF7-220ENST00000541963 REC114Q7Z4M0 266 aa7.14□□□□□ -1.27
CPSF7-220ENST00000541963 REXO1Q8N1G1 1221 aaKnown RBP7.14□□□□□ -1.27
CPSF7-220ENST00000541963 FBXO27Q8NI29 283 aa7.14□□□□□ -1.27
CPSF7-220ENST00000541963 KAT6BQ8WYB5 2073 aa7.14□□□□□ -1.27
CPSF7-220ENST00000541963 GAL3ST3Q96A11 431 aa7.14□□□□□ -1.27
CPSF7-220ENST00000541963 SYTL4Q96C24 671 aaPredicted RBP7.14□□□□□ -1.27
CPSF7-220ENST00000541963 RUSC1Q9BVN2 902 aa7.14□□□□□ -1.27
CPSF7-220ENST00000541963 SRRTQ9BXP5 876 aaKnown RBP7.14□□□□□ -1.27
CPSF7-220ENST00000541963 PCDH11XQ9BZA7 1347 aa7.14□□□□□ -1.27
CPSF7-220ENST00000541963 PCDH11YQ9BZA8 1340 aa7.14□□□□□ -1.27
CPSF7-220ENST00000541963 EP400Q96L91 3159 aa7.14□□□□□ -1.27
CPSF7-220ENST00000541963 SBF2Q86WG5 1849 aa7.13□□□□□ -1.27
CPSF7-220ENST00000541963 PEAK1Q9H792 1746 aa7.13□□□□□ -1.27
CPSF7-220ENST00000541963 TNS1Q9HBL0 1735 aaKnown RBP7.13□□□□□ -1.27
CPSF7-220ENST00000541963 NPC1L1Q9UHC9 1359 aa7.13□□□□□ -1.27
CPSF7-220ENST00000541963 DLL1O00548 723 aa7.13□□□□□ -1.27
CPSF7-220ENST00000541963 KCNQ2O43526 872 aa7.13□□□□□ -1.27
CPSF7-220ENST00000541963 ECEL1O95672 775 aa7.13□□□□□ -1.27
CPSF7-220ENST00000541963 FGRP09769 529 aa7.13□□□□□ -1.27
CPSF7-220ENST00000541963 CRKP46108 304 aa7.13□□□□□ -1.27
CPSF7-220ENST00000541963 MTHFSP49914 203 aa7.13□□□□□ -1.27
CPSF7-220ENST00000541963 PTPN11Q06124 597 aaPredicted RBP7.13□□□□□ -1.27
CPSF7-220ENST00000541963 PDE4BQ07343 736 aa7.13□□□□□ -1.27
CPSF7-220ENST00000541963 R3HDM1Q15032 1099 aaKnown RBP7.13□□□□□ -1.27
CPSF7-220ENST00000541963 AMOTQ4VCS5 1084 aa7.13□□□□□ -1.27
CPSF7-220ENST00000541963 PLEKHO1Q53GL0 409 aaPredicted RBP7.13□□□□□ -1.27
CPSF7-220ENST00000541963 WIPI1Q5MNZ9 446 aaPredicted RBP7.13□□□□□ -1.27
CPSF7-220ENST00000541963 LCE2CQ5TA81 110 aa7.13□□□□□ -1.27
CPSF7-220ENST00000541963 IGF2-ASQ6U949 168 aa7.13□□□□□ -1.27
CPSF7-220ENST00000541963 MPRIPQ6WCQ1 1025 aa7.13□□□□□ -1.27
CPSF7-220ENST00000541963 LINC00114Q6XXX2 140 aa7.13□□□□□ -1.27
CPSF7-220ENST00000541963 GK5Q6ZS86 529 aa7.13□□□□□ -1.27
CPSF7-220ENST00000541963 CKAP2LQ8IYA6 745 aa7.13□□□□□ -1.27
CPSF7-220ENST00000541963 IFNL2Q8IZJ0 200 aa7.13□□□□□ -1.27
CPSF7-220ENST00000541963 TRIM11Q96F44 468 aa7.13□□□□□ -1.27
CPSF7-220ENST00000541963 NRSN2Q9GZP1 204 aa7.13□□□□□ -1.27
CPSF7-220ENST00000541963 MRPL18Q9H0U6 180 aaKnown RBP7.13□□□□□ -1.27
CPSF7-220ENST00000541963 CYP4F12Q9HCS2 524 aa7.13□□□□□ -1.27
CPSF7-220ENST00000541963 BRMS1Q9HCU9 246 aa7.13□□□□□ -1.27
CPSF7-220ENST00000541963 RGPD2P0DJD1 1756 aa7.13□□□□□ -1.27
CPSF7-220ENST00000541963 ZNF862O60290 1169 aa7.12□□□□□ -1.27
CPSF7-220ENST00000541963 DIAPH1O60610 1272 aaKnown RBP7.12□□□□□ -1.27
CPSF7-220ENST00000541963 AOC2O75106 756 aa7.12□□□□□ -1.27
CPSF7-220ENST00000541963 ARHGEF15O94989 841 aa7.12□□□□□ -1.27
CPSF7-220ENST00000541963 HSP90AB1P08238 724 aaKnown RBP7.12□□□□□ -1.27
CPSF7-220ENST00000541963 ELNP15502 786 aa7.12□□□□□ -1.27
CPSF7-220ENST00000541963 EIF6P56537 245 aaKnown RBP7.12□□□□□ -1.27
CPSF7-220ENST00000541963 SNRPNP63162 240 aaKnown RBP7.12□□□□□ -1.27
CPSF7-220ENST00000541963 CNGB1Q14028 1251 aaPredicted RBP7.12□□□□□ -1.27
CPSF7-220ENST00000541963 TXNRD1Q16881 649 aa7.12□□□□□ -1.27
CPSF7-220ENST00000541963 KIF4BQ2VIQ3 1234 aa7.12□□□□□ -1.27
CPSF7-220ENST00000541963 FOXD4L6Q3SYB3 417 aaPredicted RBP7.12□□□□□ -1.27
CPSF7-220ENST00000541963 FOXD4L3Q6VB84 417 aaPredicted RBP7.12□□□□□ -1.27
CPSF7-220ENST00000541963 ACAD11Q709F0 780 aa7.12□□□□□ -1.27
CPSF7-220ENST00000541963 ANAPC16Q96DE5 110 aa7.12□□□□□ -1.27
CPSF7-220ENST00000541963 CFAP53Q96M91 514 aa7.12□□□□□ -1.27
CPSF7-220ENST00000541963 DNAJC2Q99543 621 aaKnown RBP7.12□□□□□ -1.27
CPSF7-220ENST00000541963 RNF208Q9H0X6 261 aa7.12□□□□□ -1.27
CPSF7-220ENST00000541963 CACNA2D2Q9NY47 1150 aa7.12□□□□□ -1.27
CPSF7-220ENST00000541963 STK32BQ9NY57 414 aa7.12□□□□□ -1.27
CPSF7-220ENST00000541963 TACC3Q9Y6A5 838 aa7.12□□□□□ -1.27
CPSF7-220ENST00000541963 PLEKHG2Q9H7P9 1386 aa7.11□□□□□ -1.27
CPSF7-220ENST00000541963 IGSF1Q8N6C5 1336 aa7.11□□□□□ -1.27
CPSF7-220ENST00000541963 SYNGAP1Q96PV0 1343 aa7.11□□□□□ -1.27
CPSF7-220ENST00000541963 WIPF1O43516 503 aa7.11□□□□□ -1.27
CPSF7-220ENST00000541963 ADAM11O75078 769 aa7.11□□□□□ -1.27
CPSF7-220ENST00000541963 HOXB4P17483 251 aaPredicted RBP7.11□□□□□ -1.27
CPSF7-220ENST00000541963 ID3Q02535 119 aa7.11□□□□□ -1.27
CPSF7-220ENST00000541963 LRRFIP1Q32MZ4 808 aaKnown RBP7.11□□□□□ -1.27
CPSF7-220ENST00000541963 AKAP4Q5JQC9 854 aa7.11□□□□□ -1.27
CPSF7-220ENST00000541963 SULT6B1Q6IMI4 303 aa7.11□□□□□ -1.27
CPSF7-220ENST00000541963 PTF1AQ7RTS3 328 aa7.11□□□□□ -1.27
CPSF7-220ENST00000541963 ZSCAN1Q8NBB4 408 aa7.11□□□□□ -1.27
CPSF7-220ENST00000541963 OR6P1Q8NGX9 317 aa7.11□□□□□ -1.27
CPSF7-220ENST00000541963 UBASH3BQ8TF42 649 aa7.11□□□□□ -1.27
CPSF7-220ENST00000541963 PLPPR2Q96GM1 343 aa7.11□□□□□ -1.27
CPSF7-220ENST00000541963 KCNK4Q9NYG8 393 aa7.11□□□□□ -1.27
CPSF7-220ENST00000541963 PCDHB14Q9Y5E9 798 aa7.11□□□□□ -1.27
CPSF7-220ENST00000541963 MEGF6O75095 1541 aa7.11□□□□□ -1.27
CPSF7-220ENST00000541963 MEGF11A6BM72 1044 aa7.1□□□□□ -1.27
CPSF7-220ENST00000541963 DCDC2CA8MYV0 355 aa7.1□□□□□ -1.27
CPSF7-220ENST00000541963 U2SURPO15042 1029 aaKnown RBP7.1□□□□□ -1.27
CPSF7-220ENST00000541963 CYP27B1O15528 508 aa7.1□□□□□ -1.27
CPSF7-220ENST00000541963 GRIN3BO60391 1043 aa7.1□□□□□ -1.27
CPSF7-220ENST00000541963 CTSBP07858 339 aa7.1□□□□□ -1.27
CPSF7-220ENST00000541963 IL13P35225 146 aa7.1□□□□□ -1.27
CPSF7-220ENST00000541963 INSM1Q01101 510 aaPredicted RBP7.1□□□□□ -1.27
CPSF7-220ENST00000541963 RBL2Q08999 1139 aa7.1□□□□□ -1.27
CPSF7-220ENST00000541963 TNNI3KQ59H18 835 aa7.1□□□□□ -1.27
CPSF7-220ENST00000541963 C1orf141Q5JVX7 400 aa7.1□□□□□ -1.27
CPSF7-220ENST00000541963 FDX2Q6P4F2 183 aa7.1□□□□□ -1.27
CPSF7-220ENST00000541963 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.1□□□□□ -1.27
CPSF7-220ENST00000541963 C12orf50Q8NA57 414 aaPredicted RBP7.1□□□□□ -1.27
CPSF7-220ENST00000541963 SMARCC1Q92922 1105 aaPredicted RBP7.1□□□□□ -1.27
CPSF7-220ENST00000541963 SCARF2Q96GP6 870 aaPredicted RBP7.1□□□□□ -1.27
CPSF7-220ENST00000541963 NACC1Q96RE7 527 aa7.1□□□□□ -1.27
CPSF7-220ENST00000541963 WDR18Q9BV38 432 aa7.1□□□□□ -1.27
CPSF7-220ENST00000541963 PPT2Q9UMR5 302 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms