RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 DNAH14Q0VDD8 3507 aa9.9□□□□□ -0.82
CHD4-208ENST00000540960 ATAD5Q96QE3 1844 aa9.9□□□□□ -0.82
CHD4-208ENST00000540960 ACACBO00763 2458 aa9.9□□□□□ -0.83
CHD4-208ENST00000540960 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.89□□□□□ -0.83
CHD4-208ENST00000540960 A0A1W2PQ45 241 aaPredicted RBP9.89□□□□□ -0.83
CHD4-208ENST00000540960 A0A1W2PQY0 241 aa9.89□□□□□ -0.83
CHD4-208ENST00000540960 DDTLA6NHG4 134 aaPredicted RBP9.89□□□□□ -0.83
CHD4-208ENST00000540960 LPXNO60711 386 aa9.89□□□□□ -0.83
CHD4-208ENST00000540960 PDE8BO95263 885 aa9.89□□□□□ -0.83
CHD4-208ENST00000540960 HMGB1P09429 215 aaKnown RBP9.89□□□□□ -0.83
CHD4-208ENST00000540960 NUCB2P80303 420 aa9.89□□□□□ -0.83
CHD4-208ENST00000540960 PABPC4Q13310 644 aaKnown RBP eCLIP9.89□□□□□ -0.83
CHD4-208ENST00000540960 TSHZ3Q63HK5 1081 aa9.89□□□□□ -0.83
CHD4-208ENST00000540960 OTOP2Q7RTS6 562 aa9.89□□□□□ -0.83
CHD4-208ENST00000540960 ANKRD33Q7Z3H0 272 aa9.89□□□□□ -0.83
CHD4-208ENST00000540960 CCAR1Q8IX12 1150 aaKnown RBP9.89□□□□□ -0.83
CHD4-208ENST00000540960 KLHDC4Q8TBB5 520 aa9.89□□□□□ -0.83
CHD4-208ENST00000540960 PAGR1Q9BTK6 254 aa9.89□□□□□ -0.83
CHD4-208ENST00000540960 PAG1Q9NWQ8 432 aa9.89□□□□□ -0.83
CHD4-208ENST00000540960 CTNNA3Q9UI47 895 aa9.89□□□□□ -0.83
CHD4-208ENST00000540960 COL4A4P53420 1690 aaPredicted RBP9.89□□□□□ -0.83
CHD4-208ENST00000540960 DMDP11532 3685 aa9.89□□□□□ -0.83
CHD4-208ENST00000540960 MAP1BP46821 2468 aaKnown RBP9.88□□□□□ -0.83
CHD4-208ENST00000540960 FAM196BA6NMK8 535 aa9.88□□□□□ -0.83
CHD4-208ENST00000540960 CA3P07451 260 aa9.88□□□□□ -0.83
CHD4-208ENST00000540960 IRX3P78415 501 aaPredicted RBP9.88□□□□□ -0.83
CHD4-208ENST00000540960 GRB10Q13322 594 aa9.88□□□□□ -0.83
CHD4-208ENST00000540960 RRP1BQ14684 758 aaKnown RBP9.88□□□□□ -0.83
CHD4-208ENST00000540960 DIXDC1Q155Q3 683 aa9.88□□□□□ -0.83
CHD4-208ENST00000540960 LEXMQ3ZCV2 418 aa9.88□□□□□ -0.83
CHD4-208ENST00000540960 MCMDC2Q4G0Z9 681 aa9.88□□□□□ -0.83
CHD4-208ENST00000540960 PTCRAQ6ISU1 281 aaPredicted RBP9.88□□□□□ -0.83
CHD4-208ENST00000540960 PSRC1Q6PGN9 363 aaPredicted RBP9.88□□□□□ -0.83
CHD4-208ENST00000540960 ZNF280CQ8ND82 737 aa9.88□□□□□ -0.83
CHD4-208ENST00000540960 ARNTL2Q8WYA1 636 aa9.88□□□□□ -0.83
CHD4-208ENST00000540960 ATOH1Q92858 354 aaPredicted RBP9.88□□□□□ -0.83
CHD4-208ENST00000540960 INTS4Q96HW7 963 aaKnown RBP9.88□□□□□ -0.83
CHD4-208ENST00000540960 ZSCAN31Q96LW9 406 aaPredicted RBP9.88□□□□□ -0.83
CHD4-208ENST00000540960 TOX2Q96NM4 488 aa9.88□□□□□ -0.83
CHD4-208ENST00000540960 KIF2CQ99661 725 aa9.88□□□□□ -0.83
CHD4-208ENST00000540960 DBNDD2Q9BQY9 259 aa9.88□□□□□ -0.83
CHD4-208ENST00000540960 PPP1R12CQ9BZL4 782 aa9.88□□□□□ -0.83
CHD4-208ENST00000540960 UBE2ZQ9H832 354 aaPredicted RBP9.88□□□□□ -0.83
CHD4-208ENST00000540960 TRPC6Q9Y210 931 aa9.88□□□□□ -0.83
CHD4-208ENST00000540960 PCDHA11Q9Y5I1 949 aa9.88□□□□□ -0.83
CHD4-208ENST00000540960 GVINP1Q7Z2Y8 2422 aa9.88□□□□□ -0.83
CHD4-208ENST00000540960 CCDC171Q6TFL3 1326 aa9.87□□□□□ -0.83
CHD4-208ENST00000540960 GRXCR2A6NFK2 248 aa9.87□□□□□ -0.83
CHD4-208ENST00000540960 DCDC2CA8MYV0 355 aa9.87□□□□□ -0.83
CHD4-208ENST00000540960 RNF113AO15541 343 aaKnown RBP9.87□□□□□ -0.83
CHD4-208ENST00000540960 SEPT4O43236 478 aa9.87□□□□□ -0.83
CHD4-208ENST00000540960 CNMDO75829 334 aa9.87□□□□□ -0.83
CHD4-208ENST00000540960 PGK1P00558 417 aa9.87□□□□□ -0.83
CHD4-208ENST00000540960 FGBP02675 491 aa9.87□□□□□ -0.83
CHD4-208ENST00000540960 KCNA5P22460 613 aa9.87□□□□□ -0.83
CHD4-208ENST00000540960 PTPREP23469 700 aa9.87□□□□□ -0.83
CHD4-208ENST00000540960 NEK4P51957 841 aa9.87□□□□□ -0.83
CHD4-208ENST00000540960 TSGA10IPQ3SY00 556 aa9.87□□□□□ -0.83
CHD4-208ENST00000540960 LRRC24Q50LG9 513 aa9.87□□□□□ -0.83
CHD4-208ENST00000540960 SH3D19Q5HYK7 790 aa9.87□□□□□ -0.83
CHD4-208ENST00000540960 FBXO33Q7Z6M2 555 aa9.87□□□□□ -0.83
CHD4-208ENST00000540960 POTEDQ86YR6 584 aa9.87□□□□□ -0.83
CHD4-208ENST00000540960 MAP4K1Q92918 833 aa9.87□□□□□ -0.83
CHD4-208ENST00000540960 KCNB2Q92953 911 aa9.87□□□□□ -0.83
CHD4-208ENST00000540960 XAGE2Q96GT9 111 aa9.87□□□□□ -0.83
CHD4-208ENST00000540960 GBP4Q96PP9 640 aa9.87□□□□□ -0.83
CHD4-208ENST00000540960 DNAJC2Q99543 621 aaKnown RBP9.87□□□□□ -0.83
CHD4-208ENST00000540960 LSG1Q9H089 658 aaKnown RBP9.87□□□□□ -0.83
CHD4-208ENST00000540960 USP40Q9NVE5 1235 aa9.87□□□□□ -0.83
CHD4-208ENST00000540960 CYP46A1Q9Y6A2 500 aa9.87□□□□□ -0.83
CHD4-208ENST00000540960 SLC15A5A6NIM6 579 aa9.86□□□□□ -0.83
CHD4-208ENST00000540960 GOLGA6L22H0YM25 854 aa9.86□□□□□ -0.83
CHD4-208ENST00000540960 SEMA3EO15041 775 aa9.86□□□□□ -0.83
CHD4-208ENST00000540960 HOXC6P09630 235 aa9.86□□□□□ -0.83
CHD4-208ENST00000540960 HOXA7P31268 230 aaPredicted RBP9.86□□□□□ -0.83
CHD4-208ENST00000540960 CYP2C18P33260 490 aa9.86□□□□□ -0.83
CHD4-208ENST00000540960 TIMM10P62072 90 aa9.86□□□□□ -0.83
CHD4-208ENST00000540960 UBE4AQ14139 1066 aa9.86□□□□□ -0.83
CHD4-208ENST00000540960 WDR78Q5VTH9 848 aa9.86□□□□□ -0.83
CHD4-208ENST00000540960 CCDC174Q6PII3 467 aa9.86□□□□□ -0.83
CHD4-208ENST00000540960 TMEM199Q8N511 208 aa9.86□□□□□ -0.83
CHD4-208ENST00000540960 TBC1D22AQ8WUA7 517 aa9.86□□□□□ -0.83
CHD4-208ENST00000540960 DSCC1Q9BVC3 393 aa9.86□□□□□ -0.83
CHD4-208ENST00000540960 IL23AQ9NPF7 189 aa9.86□□□□□ -0.83
CHD4-208ENST00000540960 SH2B1Q9NRF2 756 aaPredicted RBP9.86□□□□□ -0.83
CHD4-208ENST00000540960 FOXD4L1Q9NU39 408 aa9.86□□□□□ -0.83
CHD4-208ENST00000540960 MUTYHQ9UIF7 546 aa9.86□□□□□ -0.83
CHD4-208ENST00000540960 WDR87Q6ZQQ6 2873 aa9.86□□□□□ -0.83
CHD4-208ENST00000540960 SETXQ7Z333 2677 aaKnown RBP9.86□□□□□ -0.83
CHD4-208ENST00000540960 DMXL1Q9Y485 3027 aa9.85□□□□□ -0.83
CHD4-208ENST00000540960 PRR23AA6NEV1 266 aa9.85□□□□□ -0.83
CHD4-208ENST00000540960 H0Y858 1186 aa9.85□□□□□ -0.83
CHD4-208ENST00000540960 MAP4K4O95819 1239 aaPredicted RBP9.85□□□□□ -0.83
CHD4-208ENST00000540960 NMIQ13287 307 aaPredicted RBP9.85□□□□□ -0.83
CHD4-208ENST00000540960 CAVIN4Q5BKX8 364 aa9.85□□□□□ -0.83
CHD4-208ENST00000540960 VPS53Q5VIR6 699 aa9.85□□□□□ -0.83
CHD4-208ENST00000540960 ZSCAN29Q8IWY8 852 aaPredicted RBP9.85□□□□□ -0.83
CHD4-208ENST00000540960 PBXIP1Q96AQ6 731 aa9.85□□□□□ -0.83
CHD4-208ENST00000540960 VWCEQ96DN2 955 aa9.85□□□□□ -0.83
CHD4-208ENST00000540960 ALDH8A1Q9H2A2 487 aaPredicted RBP9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms