RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 BIRC3Q13489 604 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 PLEKHO1Q53GL0 409 aaPredicted RBP9.58□□□□□ -0.88
YBX3-208ENST00000540447 ADALQ6DHV7 355 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 USHBP1Q8N6Y0 703 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 DNAJC9Q8WXX5 260 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 MIEF2Q96C03 454 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 NR1H4Q96RI1 486 aaPredicted RBP9.58□□□□□ -0.88
YBX3-208ENST00000540447 ANKRD2Q9GZV1 360 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 TRPC6Q9Y210 931 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 ANKRD50Q9ULJ7 1429 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 DDIT3P35638 169 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 PACS2Q86VP3 889 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 SYT2Q8N9I0 419 aaPredicted RBP9.58□□□□□ -0.88
YBX3-208ENST00000540447 USP33Q8TEY7 942 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 MAK16Q9BXY0 300 aaKnown RBP9.58□□□□□ -0.88
YBX3-208ENST00000540447 ZFATQ9P243 1243 aa9.58□□□□□ -0.88
YBX3-208ENST00000540447 SASH1O94885 1247 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 ZRANB2O95218 330 aaKnown RBP eCLIP9.57□□□□□ -0.88
YBX3-208ENST00000540447 EEF1GP26641 437 aaKnown RBP9.57□□□□□ -0.88
YBX3-208ENST00000540447 CCDC84Q86UT8 332 aaPredicted RBP9.57□□□□□ -0.88
YBX3-208ENST00000540447 PALM2Q8IXS6 379 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 KAT14Q9H8E8 782 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 MKNK2Q9HBH9 465 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 TMEM165Q9HC07 324 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 CCDC87Q9NVE4 849 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 PPP1R1BQ9UD71 204 aaPredicted RBP9.57□□□□□ -0.88
YBX3-208ENST00000540447 VWA3AA6NCI4 1184 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 HNRNPCL2B2RXH8 293 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 HNRNPCL1O60812 293 aaKnown RBP9.57□□□□□ -0.88
YBX3-208ENST00000540447 DEAF1O75398 565 aaPredicted RBP9.57□□□□□ -0.88
YBX3-208ENST00000540447 HDLBPQ00341 1268 aaKnown RBP9.57□□□□□ -0.88
YBX3-208ENST00000540447 PDE4DQ08499 809 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 ADCY1Q08828 1119 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 MAP3K12Q12852 859 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 MMEL1Q495T6 779 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 SIX5Q8N196 739 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 RASGRF2O14827 1237 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 IGHMBP2P38935 993 aaKnown RBP9.57□□□□□ -0.88
YBX3-208ENST00000540447 ECE1P42892 770 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 TMEM132EQ6IEE7 984 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 OPTNQ96CV9 577 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 ZKSCAN3Q9BRR0 538 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 ZNF287Q9HBT7 754 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 NOD2Q9HC29 1040 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 GID8Q9NWU2 228 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 PDP2Q9P2J9 529 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 NVLO15381 856 aaKnown RBP9.57□□□□□ -0.88
YBX3-208ENST00000540447 KRT7P08729 469 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 ADCY8P40145 1251 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 STAT2P52630 851 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 TRAF7Q6Q0C0 670 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 RGS9BPQ6ZS82 235 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 CDC5LQ99459 802 aaKnown RBP9.57□□□□□ -0.88
YBX3-208ENST00000540447 PITPNM3Q9BZ71 974 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 CAPN11Q9UMQ6 739 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 MLH1P40692 756 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 C1orf146Q5VVC0 180 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 C11orf57Q6ZUT1 292 aaPredicted RBP9.57□□□□□ -0.88
YBX3-208ENST00000540447 TMTC2Q8N394 836 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 PLIN2Q99541 437 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 SERPINI1Q99574 410 aa9.57□□□□□ -0.88
YBX3-208ENST00000540447 POLR3CQ9BUI4 534 aaPredicted RBP9.57□□□□□ -0.88
YBX3-208ENST00000540447 TSPAN9O75954 239 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 CASP14P31944 242 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 HDAC4P56524 1084 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 PPP2R2AP63151 447 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 ARID5BQ14865 1188 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 CYB5D1Q6P9G0 228 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 DTHD1Q6ZMT9 781 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 CHST3Q7LGC8 479 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 TTC6Q86TZ1 520 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 ENOX1Q8TC92 643 aaKnown RBP9.56□□□□□ -0.88
YBX3-208ENST00000540447 GRK7Q8WTQ7 553 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 ZBED2Q9BTP6 218 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 TRAIPQ9BWF2 469 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 KRT23Q9C075 422 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 ZNF644Q9H582 1327 aaPredicted RBP9.56□□□□□ -0.88
YBX3-208ENST00000540447 FYCO1Q9BQS8 1478 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 KCNJ18B7U540 433 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 FAM13AO94988 1023 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 SLCO1A2P46721 670 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 CDR2Q01850 454 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 TBL3Q12788 808 aaKnown RBP9.56□□□□□ -0.88
YBX3-208ENST00000540447 KCNJ12Q14500 433 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 ARHGAP44Q17R89 818 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 METTL24Q5JXM2 366 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 MCM10Q7L590 875 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 C17orf50Q8WW18 174 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 KIFC3Q9BVG8 833 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 FAM207AQ9NSI2 230 aaPredicted RBP9.56□□□□□ -0.88
YBX3-208ENST00000540447 NFU1Q9UMS0 254 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 ZNF148Q9UQR1 794 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 BZW2Q9Y6E2 419 aaKnown RBP9.56□□□□□ -0.88
YBX3-208ENST00000540447 CAPN1P07384 714 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 PPP4R3AQ6IN85 833 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 CNNM4Q6P4Q7 775 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 HIPK4Q8NE63 616 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 CHMP6Q96FZ7 201 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 USP28Q96RU2 1077 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 ATP6V0A4Q9HBG4 840 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms