RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 GRK7Q8WTQ7 553 aa11.71□□□□□ -0.53
CLIP1-209ENST00000537178 DACT3Q96B18 629 aaPredicted RBP11.71□□□□□ -0.53
CLIP1-209ENST00000537178 KRT12Q99456 494 aa11.71□□□□□ -0.53
CLIP1-209ENST00000537178 FPGT-TNNI3KV9GXZ4 949 aa11.71□□□□□ -0.53
CLIP1-209ENST00000537178 CRYBG1Q9Y4K1 1723 aa11.71□□□□□ -0.54
CLIP1-209ENST00000537178 ECM2O94769 699 aaPredicted RBP11.71□□□□□ -0.54
CLIP1-209ENST00000537178 NELFCDQ8IXH7 590 aa11.71□□□□□ -0.54
CLIP1-209ENST00000537178 OR8K1Q8NGG5 319 aa11.71□□□□□ -0.54
CLIP1-209ENST00000537178 C3P01024 1663 aa11.71□□□□□ -0.54
CLIP1-209ENST00000537178 SMIM24O75264 130 aa11.71□□□□□ -0.54
CLIP1-209ENST00000537178 LONRF3Q496Y0 759 aa11.71□□□□□ -0.54
CLIP1-209ENST00000537178 NSMFQ6X4W1 530 aa11.71□□□□□ -0.54
CLIP1-209ENST00000537178 PDZD4Q76G19 769 aaPredicted RBP11.71□□□□□ -0.54
CLIP1-209ENST00000537178 MAEAQ7L5Y9 396 aa11.71□□□□□ -0.54
CLIP1-209ENST00000537178 A0A1W2PP64 1363 aa11.71□□□□□ -0.54
CLIP1-209ENST00000537178 PFDN6O15212 129 aa11.7□□□□□ -0.54
CLIP1-209ENST00000537178 TNNI1P19237 187 aa11.7□□□□□ -0.54
CLIP1-209ENST00000537178 RFX1P22670 979 aa11.7□□□□□ -0.54
CLIP1-209ENST00000537178 ZNF445P59923 1031 aa11.7□□□□□ -0.54
CLIP1-209ENST00000537178 MIS12Q9H081 205 aa11.7□□□□□ -0.54
CLIP1-209ENST00000537178 TSPYL2Q9H2G4 693 aaPredicted RBP11.7□□□□□ -0.54
CLIP1-209ENST00000537178 NCOA5Q9HCD5 579 aaKnown RBP11.7□□□□□ -0.54
CLIP1-209ENST00000537178 FAM207AQ9NSI2 230 aaPredicted RBP11.7□□□□□ -0.54
CLIP1-209ENST00000537178 POLKQ9UBT6 870 aa11.7□□□□□ -0.54
CLIP1-209ENST00000537178 MAP2K2P36507 400 aa11.7□□□□□ -0.54
CLIP1-209ENST00000537178 EIF6P56537 245 aaKnown RBP11.7□□□□□ -0.54
CLIP1-209ENST00000537178 HADHQ16836 314 aaKnown RBP11.7□□□□□ -0.54
CLIP1-209ENST00000537178 NLRC4Q9NPP4 1024 aa11.7□□□□□ -0.54
CLIP1-209ENST00000537178 ZNF277Q9NRM2 450 aaPredicted RBP11.7□□□□□ -0.54
CLIP1-209ENST00000537178 DIP2CQ9Y2E4 1556 aa11.7□□□□□ -0.54
CLIP1-209ENST00000537178 NALCNQ8IZF0 1738 aa11.7□□□□□ -0.54
CLIP1-209ENST00000537178 LPXNO60711 386 aa11.7□□□□□ -0.54
CLIP1-209ENST00000537178 PRDM1O75626 825 aa11.7□□□□□ -0.54
CLIP1-209ENST00000537178 ARHGAP44Q17R89 818 aa11.7□□□□□ -0.54
CLIP1-209ENST00000537178 REXO1Q8N1G1 1221 aaKnown RBP11.7□□□□□ -0.54
CLIP1-209ENST00000537178 ITGA6P23229 1130 aa11.7□□□□□ -0.54
CLIP1-209ENST00000537178 TRAPPC3LQ5T215 181 aa11.7□□□□□ -0.54
CLIP1-209ENST00000537178 TYW1BQ6NUM6 668 aa11.7□□□□□ -0.54
CLIP1-209ENST00000537178 MIER3Q7Z3K6 550 aa11.7□□□□□ -0.54
CLIP1-209ENST00000537178 TSPYL6Q8N831 410 aa11.7□□□□□ -0.54
CLIP1-209ENST00000537178 PLBD2Q8NHP8 589 aa11.7□□□□□ -0.54
CLIP1-209ENST00000537178 MGARPQ8TDB4 240 aa11.7□□□□□ -0.54
CLIP1-209ENST00000537178 DBNDD2Q9BQY9 259 aa11.7□□□□□ -0.54
CLIP1-209ENST00000537178 RAB20Q9NX57 234 aa11.7□□□□□ -0.54
CLIP1-209ENST00000537178 GGA1Q9UJY5 639 aa11.7□□□□□ -0.54
CLIP1-209ENST00000537178 C2CD5Q86YS7 1000 aa11.69□□□□□ -0.54
CLIP1-209ENST00000537178 KBTBD3Q8NAB2 608 aa11.69□□□□□ -0.54
CLIP1-209ENST00000537178 SDCCAG3Q96C92 435 aa11.69□□□□□ -0.54
CLIP1-209ENST00000537178 STK38LQ9Y2H1 464 aa11.69□□□□□ -0.54
CLIP1-209ENST00000537178 NOC2LQ9Y3T9 749 aaKnown RBP11.69□□□□□ -0.54
CLIP1-209ENST00000537178 HYOU1Q9Y4L1 999 aa11.69□□□□□ -0.54
CLIP1-209ENST00000537178 SNX14Q9Y5W7 946 aa11.69□□□□□ -0.54
CLIP1-209ENST00000537178 ASXL2Q76L83 1435 aa11.69□□□□□ -0.54
CLIP1-209ENST00000537178 XRCC5P13010 732 aaKnown RBP11.69□□□□□ -0.54
CLIP1-209ENST00000537178 KMT5BQ4FZB7 885 aa11.69□□□□□ -0.54
CLIP1-209ENST00000537178 FAM173BQ6P4H8 233 aa11.69□□□□□ -0.54
CLIP1-209ENST00000537178 U2AF1L4Q8WU68 220 aaKnown RBP11.69□□□□□ -0.54
CLIP1-209ENST00000537178 TACO1Q9BSH4 297 aaKnown RBP11.69□□□□□ -0.54
CLIP1-209ENST00000537178 ST7Q9NRC1 585 aa11.69□□□□□ -0.54
CLIP1-209ENST00000537178 TBC1D7Q9P0N9 293 aa11.69□□□□□ -0.54
CLIP1-209ENST00000537178 PCDHB13Q9Y5F0 798 aa11.69□□□□□ -0.54
CLIP1-209ENST00000537178 ATP10DQ9P241 1426 aa11.69□□□□□ -0.54
CLIP1-209ENST00000537178 PSDA5PKW4 1024 aaPredicted RBP11.69□□□□□ -0.54
CLIP1-209ENST00000537178 DDX39AO00148 427 aaKnown RBP11.69□□□□□ -0.54
CLIP1-209ENST00000537178 SGSM2O43147 1006 aa11.69□□□□□ -0.54
CLIP1-209ENST00000537178 OTUD6AQ7L8S5 288 aa11.69□□□□□ -0.54
CLIP1-209ENST00000537178 WHAMMQ8TF30 809 aa11.69□□□□□ -0.54
CLIP1-209ENST00000537178 KDM3AQ9Y4C1 1321 aa11.69□□□□□ -0.54
CLIP1-209ENST00000537178 OTUD7BQ6GQQ9 843 aa11.69□□□□□ -0.54
CLIP1-209ENST00000537178 TRIM50Q86XT4 487 aa11.69□□□□□ -0.54
CLIP1-209ENST00000537178 CPXCR1Q8N123 301 aa11.69□□□□□ -0.54
CLIP1-209ENST00000537178 TSC1Q92574 1164 aa11.69□□□□□ -0.54
CLIP1-209ENST00000537178 FAM89AQ96GI7 184 aa11.69□□□□□ -0.54
CLIP1-209ENST00000537178 XAGE2Q96GT9 111 aa11.69□□□□□ -0.54
CLIP1-209ENST00000537178 TYW1Q9NV66 732 aaKnown RBP11.69□□□□□ -0.54
CLIP1-209ENST00000537178 PDE8AO60658 829 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 TCP1P17987 556 aaKnown RBP11.68□□□□□ -0.54
CLIP1-209ENST00000537178 PDE6BP35913 854 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 ZSCAN26Q16670 478 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 MCTP2Q6DN12 878 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 PDLIM2Q96JY6 352 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 CCDC68Q9H2F9 335 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 CD2APQ9Y5K6 639 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 ESYT2A0FGR8 921 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 DNAJC8O75937 253 aaPredicted RBP11.68□□□□□ -0.54
CLIP1-209ENST00000537178 CFBP00751 764 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 YARSP54577 528 aaKnown RBP11.68□□□□□ -0.54
CLIP1-209ENST00000537178 TMCO4Q5TGY1 634 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 NLRX1Q86UT6 975 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 LRRC59Q96AG4 307 aaKnown RBP11.68□□□□□ -0.54
CLIP1-209ENST00000537178 BABAM1Q9NWV8 329 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 PCDH11XQ9BZA7 1347 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 PCDH11YQ9BZA8 1340 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 GOLGA8KD6RF30 607 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 KRIT1O00522 736 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 N4BP1O75113 896 aaKnown RBP11.68□□□□□ -0.54
CLIP1-209ENST00000537178 GSTA1P08263 222 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 GSTA2P09210 222 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 ADCY8P40145 1251 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 GNGT1P63211 74 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms