RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 FCRL2Q96LA5 508 aaPredicted RBP4.9□□□□□ -1.63
SKA3-207ENST00000536239 IRS2Q9Y4H2 1338 aa4.9□□□□□ -1.63
SKA3-207ENST00000536239 NUDT19A8MXV4 375 aa4.89□□□□□ -1.63
SKA3-207ENST00000536239 K7ESM1 405 aa4.89□□□□□ -1.63
SKA3-207ENST00000536239 RGS13O14921 159 aa4.89□□□□□ -1.63
SKA3-207ENST00000536239 DNAJA2O60884 412 aa4.89□□□□□ -1.63
SKA3-207ENST00000536239 HTR3BO95264 441 aa4.89□□□□□ -1.63
SKA3-207ENST00000536239 BRD1O95696 1058 aa4.89□□□□□ -1.63
SKA3-207ENST00000536239 CBX2Q14781 532 aaPredicted RBP4.89□□□□□ -1.63
SKA3-207ENST00000536239 NLGN1Q8N2Q7 840 aa4.89□□□□□ -1.63
SKA3-207ENST00000536239 NOC4LQ9BVI4 516 aaKnown RBP4.89□□□□□ -1.63
SKA3-207ENST00000536239 PALD1Q9ULE6 856 aa4.89□□□□□ -1.63
SKA3-207ENST00000536239 POLR3KQ9Y2Y1 108 aaPredicted RBP4.89□□□□□ -1.63
SKA3-207ENST00000536239 TAF6LQ9Y6J9 622 aa4.89□□□□□ -1.63
SKA3-207ENST00000536239 GRIN3BO60391 1043 aa4.88□□□□□ -1.63
SKA3-207ENST00000536239 PRPF40AO75400 957 aaKnown RBP4.88□□□□□ -1.63
SKA3-207ENST00000536239 F13A1P00488 732 aa4.88□□□□□ -1.63
SKA3-207ENST00000536239 PRKCAP17252 672 aa4.88□□□□□ -1.63
SKA3-207ENST00000536239 IGFBP6P24592 240 aaPredicted RBP4.88□□□□□ -1.63
SKA3-207ENST00000536239 RNF4P78317 190 aa4.88□□□□□ -1.63
SKA3-207ENST00000536239 CYP4F8P98187 520 aa4.88□□□□□ -1.63
SKA3-207ENST00000536239 LMNB2Q03252 620 aa4.88□□□□□ -1.63
SKA3-207ENST00000536239 CAMK2GQ13555 558 aaPredicted RBP4.88□□□□□ -1.63
SKA3-207ENST00000536239 NBPF9Q3BBW0 867 aa4.88□□□□□ -1.63
SKA3-207ENST00000536239 UBXN11Q5T124 520 aa4.88□□□□□ -1.63
SKA3-207ENST00000536239 TNFRSF12AQ9NP84 129 aa4.88□□□□□ -1.63
SKA3-207ENST00000536239 RNF19AQ9NV58 838 aa4.88□□□□□ -1.63
SKA3-207ENST00000536239 ACSL6Q9UKU0 697 aa4.88□□□□□ -1.63
SKA3-207ENST00000536239 GPR55Q9Y2T6 319 aaPredicted RBP4.88□□□□□ -1.63
SKA3-207ENST00000536239 AKAP8O43823 692 aaKnown RBP4.87□□□□□ -1.63
SKA3-207ENST00000536239 UBOX5O94941 541 aa4.87□□□□□ -1.63
SKA3-207ENST00000536239 PRAMEF1O95521 474 aa4.87□□□□□ -1.63
SKA3-207ENST00000536239 LIMS1P48059 325 aa4.87□□□□□ -1.63
SKA3-207ENST00000536239 SNW1Q13573 536 aaKnown RBP4.87□□□□□ -1.63
SKA3-207ENST00000536239 TAF1CQ15572 869 aaPredicted RBP4.87□□□□□ -1.63
SKA3-207ENST00000536239 ZNF827Q17R98 1081 aa4.87□□□□□ -1.63
SKA3-207ENST00000536239 NBPF12Q5TAG4 269 aaPredicted RBP4.87□□□□□ -1.63
SKA3-207ENST00000536239 RPTNQ6XPR3 784 aa4.87□□□□□ -1.63
SKA3-207ENST00000536239 SLCO6A1Q86UG4 719 aa4.87□□□□□ -1.63
SKA3-207ENST00000536239 GTF3C3Q9Y5Q9 886 aa4.87□□□□□ -1.63
SKA3-207ENST00000536239 A0A1W2PQ45 241 aaPredicted RBP4.86□□□□□ -1.63
SKA3-207ENST00000536239 A0A1W2PQY0 241 aa4.86□□□□□ -1.63
SKA3-207ENST00000536239 PF4P02776 101 aa4.86□□□□□ -1.63
SKA3-207ENST00000536239 PFKLP17858 780 aa4.86□□□□□ -1.63
SKA3-207ENST00000536239 MAGEA10P43363 369 aaPredicted RBP4.86□□□□□ -1.63
SKA3-207ENST00000536239 ST13P50502 369 aaKnown RBP4.86□□□□□ -1.63
SKA3-207ENST00000536239 FERMT3Q86UX7 667 aa4.86□□□□□ -1.63
SKA3-207ENST00000536239 NUP43Q8NFH3 380 aa4.86□□□□□ -1.63
SKA3-207ENST00000536239 DUSP9Q99956 384 aaKnown RBP4.86□□□□□ -1.63
SKA3-207ENST00000536239 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP4.86□□□□□ -1.63
SKA3-207ENST00000536239 ERVK13-1Q9NX77 482 aa4.86□□□□□ -1.63
SKA3-207ENST00000536239 SUV39H1O43463 412 aa4.85□□□□□ -1.63
SKA3-207ENST00000536239 SIGLEC6O43699 453 aa4.85□□□□□ -1.63
SKA3-207ENST00000536239 TNFRSF1AP19438 455 aa4.85□□□□□ -1.63
SKA3-207ENST00000536239 ENDOUP21128 410 aaKnown RBP4.85□□□□□ -1.63
SKA3-207ENST00000536239 MAPKAPK2P49137 400 aa4.85□□□□□ -1.63
SKA3-207ENST00000536239 CEBPAP49715 358 aaPredicted RBP4.85□□□□□ -1.63
SKA3-207ENST00000536239 ZXDAP98168 799 aa4.85□□□□□ -1.63
SKA3-207ENST00000536239 ZNF200P98182 395 aaPredicted RBP4.85□□□□□ -1.63
SKA3-207ENST00000536239 NR1I3Q14994 352 aa4.85□□□□□ -1.63
SKA3-207ENST00000536239 PLEKHN1Q494U1 663 aaPredicted RBP4.85□□□□□ -1.63
SKA3-207ENST00000536239 VWA3BQ502W6 1294 aa4.85□□□□□ -1.63
SKA3-207ENST00000536239 NT5DC1Q5TFE4 455 aa4.85□□□□□ -1.63
SKA3-207ENST00000536239 ZC3H14Q6PJT7 736 aaKnown RBP4.85□□□□□ -1.63
SKA3-207ENST00000536239 CRELD1Q96HD1 420 aa4.85□□□□□ -1.63
SKA3-207ENST00000536239 USP40Q9NVE5 1235 aa4.85□□□□□ -1.63
SKA3-207ENST00000536239 SUSD2Q9UGT4 822 aa4.85□□□□□ -1.63
SKA3-207ENST00000536239 MINPP1Q9UNW1 487 aa4.85□□□□□ -1.63
SKA3-207ENST00000536239 USP31Q70CQ4 1352 aa4.84□□□□□ -1.63
SKA3-207ENST00000536239 A0A1B0GTL3 188 aa4.84□□□□□ -1.63
SKA3-207ENST00000536239 F6X3S4 739 aa4.84□□□□□ -1.63
SKA3-207ENST00000536239 ADAM17P78536 824 aa4.84□□□□□ -1.63
SKA3-207ENST00000536239 TARBP2Q15633 366 aaKnown RBP4.84□□□□□ -1.63
SKA3-207ENST00000536239 ARSHQ5FYA8 562 aa4.84□□□□□ -1.63
SKA3-207ENST00000536239 LIPIQ6XZB0 460 aa4.84□□□□□ -1.63
SKA3-207ENST00000536239 LSRQ86X29 649 aaPredicted RBP4.84□□□□□ -1.63
SKA3-207ENST00000536239 ADGRG2Q8IZP9 1017 aa4.84□□□□□ -1.63
SKA3-207ENST00000536239 FNIP1Q8TF40 1166 aa4.84□□□□□ -1.63
SKA3-207ENST00000536239 EAF1Q96JC9 268 aaPredicted RBP4.84□□□□□ -1.63
SKA3-207ENST00000536239 SPATA25Q9BR10 227 aa4.84□□□□□ -1.63
SKA3-207ENST00000536239 PRDM14Q9GZV8 571 aa4.84□□□□□ -1.63
SKA3-207ENST00000536239 IMPACTQ9P2X3 320 aa4.84□□□□□ -1.63
SKA3-207ENST00000536239 PLA2G1BP04054 148 aaKnown RBP4.83□□□□□ -1.64
SKA3-207ENST00000536239 MSL3P1P0C860 447 aa4.83□□□□□ -1.64
SKA3-207ENST00000536239 RAG1P15918 1043 aa4.83□□□□□ -1.64
SKA3-207ENST00000536239 FOXO4P98177 505 aa4.83□□□□□ -1.64
SKA3-207ENST00000536239 RAD51AP2Q09MP3 1159 aa4.83□□□□□ -1.64
SKA3-207ENST00000536239 MLECQ14165 292 aa4.83□□□□□ -1.64
SKA3-207ENST00000536239 MPP2Q14168 576 aa4.83□□□□□ -1.64
SKA3-207ENST00000536239 REC114Q7Z4M0 266 aa4.83□□□□□ -1.64
SKA3-207ENST00000536239 RHOVQ96L33 236 aa4.83□□□□□ -1.64
SKA3-207ENST00000536239 JMJD8Q96S16 334 aa4.83□□□□□ -1.64
SKA3-207ENST00000536239 CDADC1Q9BWV3 514 aa4.83□□□□□ -1.64
SKA3-207ENST00000536239 CHST7Q9NS84 486 aa4.83□□□□□ -1.64
SKA3-207ENST00000536239 MATN3O15232 486 aa4.82□□□□□ -1.64
SKA3-207ENST00000536239 ZNF205O95201 554 aa4.82□□□□□ -1.64
SKA3-207ENST00000536239 FBLN1P23142 703 aa4.82□□□□□ -1.64
SKA3-207ENST00000536239 BMP8BP34820 402 aa4.82□□□□□ -1.64
SKA3-207ENST00000536239 SAPCD2Q86UD0 394 aa4.82□□□□□ -1.64
SKA3-207ENST00000536239 TMEM52Q8NDY8 209 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms