RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 CDC23Q9UJX2 597 aa15.71■□□□□ 0.11
LIG1-203ENST00000536218 SHTN1A0MZ66 631 aa15.71■□□□□ 0.1
LIG1-203ENST00000536218 GRIK5Q16478 980 aa15.71■□□□□ 0.1
LIG1-203ENST00000536218 ZNF569Q5MCW4 686 aa15.71■□□□□ 0.1
LIG1-203ENST00000536218 VSTM4Q8IW00 320 aa15.71■□□□□ 0.1
LIG1-203ENST00000536218 ENAHQ8N8S7 591 aaPredicted RBP15.71■□□□□ 0.1
LIG1-203ENST00000536218 CRNKL1Q9BZJ0 848 aaKnown RBP15.71■□□□□ 0.1
LIG1-203ENST00000536218 POLR3EQ9NVU0 708 aa15.71■□□□□ 0.1
LIG1-203ENST00000536218 MTMR7Q9Y216 660 aa15.71■□□□□ 0.1
LIG1-203ENST00000536218 SERPINB2P05120 415 aa15.7■□□□□ 0.1
LIG1-203ENST00000536218 IFNAR1P17181 557 aa15.7■□□□□ 0.1
LIG1-203ENST00000536218 NLRP12P59046 1061 aa15.7■□□□□ 0.1
LIG1-203ENST00000536218 IFIT1BQ5T764 474 aaKnown RBP15.7■□□□□ 0.1
LIG1-203ENST00000536218 DCP1AQ9NPI6 582 aaPredicted RBP15.7■□□□□ 0.1
LIG1-203ENST00000536218 MCM9Q9NXL9 1143 aa15.7■□□□□ 0.1
LIG1-203ENST00000536218 ARAP2Q8WZ64 1704 aa15.7■□□□□ 0.1
LIG1-203ENST00000536218 BCORQ6W2J9 1755 aa15.7■□□□□ 0.1
LIG1-203ENST00000536218 FMNL1O95466 1100 aaPredicted RBP15.7■□□□□ 0.1
LIG1-203ENST00000536218 MSANTD4Q8NCY6 345 aa15.7■□□□□ 0.1
LIG1-203ENST00000536218 CALR3Q96L12 384 aaKnown RBP15.7■□□□□ 0.1
LIG1-203ENST00000536218 ZSCAN10Q96SZ4 725 aaPredicted RBP15.7■□□□□ 0.1
LIG1-203ENST00000536218 ODF2LQ9ULJ1 636 aa15.7■□□□□ 0.1
LIG1-203ENST00000536218 A0A0U1RQJ8 604 aa15.69■□□□□ 0.1
LIG1-203ENST00000536218 CTAGE15A4D2H0 777 aa15.69■□□□□ 0.1
LIG1-203ENST00000536218 SEMA3EO15041 775 aa15.69■□□□□ 0.1
LIG1-203ENST00000536218 KIF5CO60282 957 aa15.69■□□□□ 0.1
LIG1-203ENST00000536218 KIAA0754O94854 1291 aa15.69■□□□□ 0.1
LIG1-203ENST00000536218 YEATS4O95619 227 aa15.69■□□□□ 0.1
LIG1-203ENST00000536218 SYF2O95926 243 aaKnown RBP15.69■□□□□ 0.1
LIG1-203ENST00000536218 USP17L8P0C7I0 530 aa15.69■□□□□ 0.1
LIG1-203ENST00000536218 CTAGE8P0CG41 777 aa15.69■□□□□ 0.1
LIG1-203ENST00000536218 GYS1P13807 737 aa15.69■□□□□ 0.1
LIG1-203ENST00000536218 SPECC1Q5M775 1068 aa15.69■□□□□ 0.1
LIG1-203ENST00000536218 CTAGE6Q86UF2 777 aa15.69■□□□□ 0.1
LIG1-203ENST00000536218 IQCA1Q86XH1 822 aa15.69■□□□□ 0.1
LIG1-203ENST00000536218 CEP57Q86XR8 500 aa15.69■□□□□ 0.1
LIG1-203ENST00000536218 TMEM139Q8IV31 216 aa15.69■□□□□ 0.1
LIG1-203ENST00000536218 CTAGE4Q8IX94 777 aa15.69■□□□□ 0.1
LIG1-203ENST00000536218 TMTC2Q8N394 836 aa15.69■□□□□ 0.1
LIG1-203ENST00000536218 ATRIPQ8WXE1 791 aa15.69■□□□□ 0.1
LIG1-203ENST00000536218 NR5A1Q13285 461 aa15.69■□□□□ 0.1
LIG1-203ENST00000536218 DIS3L2Q8IYB7 885 aaKnown RBP15.69■□□□□ 0.1
LIG1-203ENST00000536218 CRACR2BQ8N4Y2 399 aaPredicted RBP15.69■□□□□ 0.1
LIG1-203ENST00000536218 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.69■□□□□ 0.1
LIG1-203ENST00000536218 BRIP1Q9BX63 1249 aa15.69■□□□□ 0.1
LIG1-203ENST00000536218 UFL1O94874 794 aa15.69■□□□□ 0.1
LIG1-203ENST00000536218 LDHBP07195 334 aaKnown RBP15.69■□□□□ 0.1
LIG1-203ENST00000536218 ACTN3Q08043 901 aaPredicted RBP15.69■□□□□ 0.1
LIG1-203ENST00000536218 SAFBQ15424 915 aaKnown RBP eCLIP15.69■□□□□ 0.1
LIG1-203ENST00000536218 KIRREL3Q8IZU9 778 aa15.69■□□□□ 0.1
LIG1-203ENST00000536218 OTUD6BQ8N6M0 293 aa15.69■□□□□ 0.1
LIG1-203ENST00000536218 FAM76AQ8TAV0 307 aa15.69■□□□□ 0.1
LIG1-203ENST00000536218 ZNF526Q8TF50 670 aaPredicted RBP15.69■□□□□ 0.1
LIG1-203ENST00000536218 IRAK1P51617 712 aa15.68■□□□□ 0.1
LIG1-203ENST00000536218 GPSM2P81274 684 aa15.68■□□□□ 0.1
LIG1-203ENST00000536218 BAZ2BQ9UIF8 2168 aaKnown RBP15.68■□□□□ 0.1
LIG1-203ENST00000536218 SEC23AQ15436 765 aa15.68■□□□□ 0.1
LIG1-203ENST00000536218 GRIPAP1Q4V328 841 aa15.68■□□□□ 0.1
LIG1-203ENST00000536218 NOA1Q8NC60 698 aaKnown RBP15.68■□□□□ 0.1
LIG1-203ENST00000536218 ZKSCAN4Q969J2 545 aaPredicted RBP15.68■□□□□ 0.1
LIG1-203ENST00000536218 FAXDC2Q96IV6 333 aa15.68■□□□□ 0.1
LIG1-203ENST00000536218 BPIFA3Q9BQP9 254 aa15.68■□□□□ 0.1
LIG1-203ENST00000536218 V9GY48 417 aaPredicted RBP15.68■□□□□ 0.1
LIG1-203ENST00000536218 RGL2O15211 777 aa15.67■□□□□ 0.1
LIG1-203ENST00000536218 PLEKHA8P1O95397 391 aa15.67■□□□□ 0.1
LIG1-203ENST00000536218 SLC39A14Q15043 492 aa15.67■□□□□ 0.1
LIG1-203ENST00000536218 CATIPQ7Z7H3 387 aa15.67■□□□□ 0.1
LIG1-203ENST00000536218 OXER1Q8TDS5 423 aa15.67■□□□□ 0.1
LIG1-203ENST00000536218 CRACR2AQ9BSW2 395 aa15.67■□□□□ 0.1
LIG1-203ENST00000536218 VPS54Q9P1Q0 977 aa15.67■□□□□ 0.1
LIG1-203ENST00000536218 ANAPC4Q9UJX5 808 aa15.67■□□□□ 0.1
LIG1-203ENST00000536218 CICQ96RK0 1608 aaPredicted RBP15.67■□□□□ 0.1
LIG1-203ENST00000536218 ZNF202O95125 648 aa15.67■□□□□ 0.1
LIG1-203ENST00000536218 CCDC175P0C221 793 aa15.67■□□□□ 0.1
LIG1-203ENST00000536218 PFKFB1P16118 471 aa15.67■□□□□ 0.1
LIG1-203ENST00000536218 DYNLL2Q96FJ2 89 aa15.67■□□□□ 0.1
LIG1-203ENST00000536218 DOCK2Q92608 1830 aa15.67■□□□□ 0.1
LIG1-203ENST00000536218 BAZ2AQ9UIF9 1905 aaKnown RBP15.67■□□□□ 0.1
LIG1-203ENST00000536218 TSPY2A6NKD2 308 aa15.67■□□□□ 0.1
LIG1-203ENST00000536218 GGCXP38435 758 aa15.67■□□□□ 0.1
LIG1-203ENST00000536218 MYL5Q02045 173 aa15.67■□□□□ 0.1
LIG1-203ENST00000536218 KRT27Q7Z3Y8 459 aa15.67■□□□□ 0.1
LIG1-203ENST00000536218 PRPF38AQ8NAV1 312 aaKnown RBP15.67■□□□□ 0.1
LIG1-203ENST00000536218 CPLX3Q8WVH0 158 aa15.67■□□□□ 0.1
LIG1-203ENST00000536218 WASF1Q92558 559 aa15.67■□□□□ 0.1
LIG1-203ENST00000536218 XDHP47989 1333 aa15.66■□□□□ 0.1
LIG1-203ENST00000536218 GOLGA6CA6NDK9 693 aa15.66■□□□□ 0.1
LIG1-203ENST00000536218 SOWAHDA6NJG2 315 aa15.66■□□□□ 0.1
LIG1-203ENST00000536218 C6orf229H3BNL8 230 aa15.66■□□□□ 0.1
LIG1-203ENST00000536218 ONECUT3O60422 494 aaPredicted RBP15.66■□□□□ 0.1
LIG1-203ENST00000536218 STX10O60499 249 aa15.66■□□□□ 0.1
LIG1-203ENST00000536218 ZMYND10O75800 440 aa15.66■□□□□ 0.1
LIG1-203ENST00000536218 GOLGA6DP0CG33 693 aa15.66■□□□□ 0.1
LIG1-203ENST00000536218 SH3RF3Q8TEJ3 882 aaPredicted RBP15.66■□□□□ 0.1
LIG1-203ENST00000536218 GOLGA6AQ9NYA3 693 aa15.66■□□□□ 0.1
LIG1-203ENST00000536218 SAP30BPQ9UHR5 308 aaKnown RBP15.66■□□□□ 0.1
LIG1-203ENST00000536218 LAMB2P55268 1798 aa15.66■□□□□ 0.1
LIG1-203ENST00000536218 A0A1W2PQ27 194 aa15.66■□□□□ 0.1
LIG1-203ENST00000536218 A0A1W2PQ64 194 aa15.66■□□□□ 0.1
LIG1-203ENST00000536218 A0A1W2PQD8 194 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms