RNA–Protein interactions for RNA: ENST00000535906.1

VPS33B-202, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2 BASIC

Gene VPS33B, Length 2,420 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-202ENST00000535906 COL11A2P13942 1736 aaPredicted RBP15.19■□□□□ 0.02
VPS33B-202ENST00000535906 TMEM232C9JQI7 657 aa15.18■□□□□ 0.02
VPS33B-202ENST00000535906 CBFA2T2O43439 604 aa15.18■□□□□ 0.02
VPS33B-202ENST00000535906 ZNF18P17022 549 aa15.18■□□□□ 0.02
VPS33B-202ENST00000535906 CDC25AP30304 524 aa15.18■□□□□ 0.02
VPS33B-202ENST00000535906 PDE6BP35913 854 aa15.18■□□□□ 0.02
VPS33B-202ENST00000535906 NCBP1Q09161 790 aaKnown RBP15.18■□□□□ 0.02
VPS33B-202ENST00000535906 INF2Q27J81 1249 aa15.18■□□□□ 0.02
VPS33B-202ENST00000535906 MSL1Q68DK7 614 aa15.18■□□□□ 0.02
VPS33B-202ENST00000535906 HOMER1Q86YM7 354 aa15.18■□□□□ 0.02
VPS33B-202ENST00000535906 ZNF592Q92610 1267 aa15.18■□□□□ 0.02
VPS33B-202ENST00000535906 ARID3AQ99856 593 aa15.18■□□□□ 0.02
VPS33B-202ENST00000535906 INTS13Q9NVM9 706 aa15.18■□□□□ 0.02
VPS33B-202ENST00000535906 USP17L5A8MUK1 530 aa15.18■□□□□ 0.02
VPS33B-202ENST00000535906 KIF2AO00139 706 aaPredicted RBP15.18■□□□□ 0.02
VPS33B-202ENST00000535906 CD44P16070 742 aaKnown RBP15.18■□□□□ 0.02
VPS33B-202ENST00000535906 GALNT17Q6IS24 598 aa15.18■□□□□ 0.02
VPS33B-202ENST00000535906 IQUBQ8NA54 791 aa15.18■□□□□ 0.02
VPS33B-202ENST00000535906 MASTLQ96GX5 879 aa15.18■□□□□ 0.02
VPS33B-202ENST00000535906 MTRQ99707 1265 aa15.18■□□□□ 0.02
VPS33B-202ENST00000535906 PARP3Q9Y6F1 533 aa15.18■□□□□ 0.02
VPS33B-202ENST00000535906 NRDCO43847 1150 aa15.17■□□□□ 0.02
VPS33B-202ENST00000535906 PDXDC2PQ6P474 469 aa15.17■□□□□ 0.02
VPS33B-202ENST00000535906 GSDMAQ96QA5 445 aa15.17■□□□□ 0.02
VPS33B-202ENST00000535906 ZMYND12Q9H0C1 365 aa15.17■□□□□ 0.02
VPS33B-202ENST00000535906 TMEM60Q9H2L4 133 aa15.17■□□□□ 0.02
VPS33B-202ENST00000535906 VAT1LQ9HCJ6 419 aa15.17■□□□□ 0.02
VPS33B-202ENST00000535906 KCNQ5Q9NR82 932 aa15.17■□□□□ 0.02
VPS33B-202ENST00000535906 SAMSN1Q9NSI8 373 aaKnown RBP15.17■□□□□ 0.02
VPS33B-202ENST00000535906 USP40Q9NVE5 1235 aa15.17■□□□□ 0.02
VPS33B-202ENST00000535906 MTMR4Q9NYA4 1195 aa15.17■□□□□ 0.02
VPS33B-202ENST00000535906 QSER1Q2KHR3 1735 aa15.17■□□□□ 0.02
VPS33B-202ENST00000535906 ADAMTSL1Q8N6G6 1762 aa15.17■□□□□ 0.02
VPS33B-202ENST00000535906 AKR1B1P15121 316 aa15.17■□□□□ 0.02
VPS33B-202ENST00000535906 ERCC5P28715 1186 aaPredicted RBP15.17■□□□□ 0.02
VPS33B-202ENST00000535906 LONP1P36776 959 aaKnown RBP15.17■□□□□ 0.02
VPS33B-202ENST00000535906 NAPAP54920 295 aa15.17■□□□□ 0.02
VPS33B-202ENST00000535906 E4F1Q66K89 784 aaPredicted RBP15.17■□□□□ 0.02
VPS33B-202ENST00000535906 VSTM4Q8IW00 320 aa15.17■□□□□ 0.02
VPS33B-202ENST00000535906 UBA5Q9GZZ9 404 aa15.17■□□□□ 0.02
VPS33B-202ENST00000535906 PSDA5PKW4 1024 aaPredicted RBP15.16■□□□□ 0.02
VPS33B-202ENST00000535906 PDHBP11177 359 aa15.16■□□□□ 0.02
VPS33B-202ENST00000535906 PPP4R3BQ5MIZ7 849 aa15.16■□□□□ 0.02
VPS33B-202ENST00000535906 CLEC10AQ8IUN9 316 aa15.16■□□□□ 0.02
VPS33B-202ENST00000535906 SMYD4Q8IYR2 804 aaPredicted RBP15.16■□□□□ 0.02
VPS33B-202ENST00000535906 ZNF622Q969S3 477 aaKnown RBP eCLIP15.16■□□□□ 0.027e-6■■■■□ 22.7
VPS33B-202ENST00000535906 RRP36Q96EU6 259 aaKnown RBP15.16■□□□□ 0.02
VPS33B-202ENST00000535906 PIGSQ96S52 555 aa15.16■□□□□ 0.02
VPS33B-202ENST00000535906 BLZF1Q9H2G9 400 aa15.16■□□□□ 0.02
VPS33B-202ENST00000535906 PLIN4Q96Q06 1357 aa15.16■□□□□ 0.02
VPS33B-202ENST00000535906 CDK11BP21127 795 aaKnown RBP15.16■□□□□ 0.02
VPS33B-202ENST00000535906 EIF6P56537 245 aaKnown RBP15.16■□□□□ 0.02
VPS33B-202ENST00000535906 CUL4BQ13620 913 aa15.16■□□□□ 0.02
VPS33B-202ENST00000535906 APOBEC3HQ6NTF7 200 aaKnown RBP15.16■□□□□ 0.02
VPS33B-202ENST00000535906 CDC42EP5Q6NZY7 148 aa15.16■□□□□ 0.02
VPS33B-202ENST00000535906 KIF18AQ8NI77 898 aa15.16■□□□□ 0.02
VPS33B-202ENST00000535906 DBNDD1Q9H9R9 158 aa15.16■□□□□ 0.02
VPS33B-202ENST00000535906 SMCO2A6NFE2 343 aa15.15■□□□□ 0.02
VPS33B-202ENST00000535906 G3V3G9 751 aa15.15■□□□□ 0.02
VPS33B-202ENST00000535906 DCAF8Q5TAQ9 597 aa15.15■□□□□ 0.02
VPS33B-202ENST00000535906 KLHL10Q6JEL2 608 aa15.15■□□□□ 0.02
VPS33B-202ENST00000535906 LRRC47Q8N1G4 583 aaKnown RBP15.15■□□□□ 0.02
VPS33B-202ENST00000535906 FLAD1Q8NFF5 587 aa15.15■□□□□ 0.02
VPS33B-202ENST00000535906 SERPINB13Q9UIV8 391 aa15.15■□□□□ 0.02
VPS33B-202ENST00000535906 FRMPD2Q68DX3 1309 aaPredicted RBP15.15■□□□□ 0.02
VPS33B-202ENST00000535906 IGKV6D-41A0A0C4DH26 115 aa15.15■□□□□ 0.02
VPS33B-202ENST00000535906 PPP1R3GB7ZBB8 358 aa15.15■□□□□ 0.02
VPS33B-202ENST00000535906 SMARCA1P28370 1054 aa15.15■□□□□ 0.02
VPS33B-202ENST00000535906 KARSQ15046 597 aaKnown RBP15.15■□□□□ 0.02
VPS33B-202ENST00000535906 HHIPL2Q6UWX4 724 aa15.15■□□□□ 0.02
VPS33B-202ENST00000535906 DTHD1Q6ZMT9 781 aa15.15■□□□□ 0.02
VPS33B-202ENST00000535906 FAM177A1Q8N128 213 aaPredicted RBP15.15■□□□□ 0.02
VPS33B-202ENST00000535906 TMX4Q9H1E5 349 aaPredicted RBP15.15■□□□□ 0.02
VPS33B-202ENST00000535906 RIOX1Q9H6W3 641 aa15.15■□□□□ 0.02
VPS33B-202ENST00000535906 MYH8P13535 1937 aa15.14■□□□□ 0.02
VPS33B-202ENST00000535906 PP2D1A8MPX8 630 aa15.14■□□□□ 0.01
VPS33B-202ENST00000535906 SLURP2P0DP57 97 aa15.14■□□□□ 0.01
VPS33B-202ENST00000535906 STX17P56962 302 aa15.14■□□□□ 0.01
VPS33B-202ENST00000535906 GOLGA8FQ08AF8 430 aa15.14■□□□□ 0.01
VPS33B-202ENST00000535906 GOLGA8DPQ0D2H9 430 aa15.14■□□□□ 0.01
VPS33B-202ENST00000535906 NFIAQ12857 509 aa15.14■□□□□ 0.01
VPS33B-202ENST00000535906 TEKT1Q969V4 418 aa15.14■□□□□ 0.01
VPS33B-202ENST00000535906 PPP1R13BQ96KQ4 1090 aa15.14■□□□□ 0.01
VPS33B-202ENST00000535906 PYM1Q9BRP8 204 aaKnown RBP15.14■□□□□ 0.01
VPS33B-202ENST00000535906 SEC63Q9UGP8 760 aaKnown RBP15.14■□□□□ 0.01
VPS33B-202ENST00000535906 SHMT1P34896 483 aa15.14■□□□□ 0.01
VPS33B-202ENST00000535906 CT47A1Q5JQC4 288 aaPredicted RBP15.14■□□□□ 0.01
VPS33B-202ENST00000535906 CCDC12Q8WUD4 166 aaPredicted RBP15.14■□□□□ 0.01
VPS33B-202ENST00000535906 C6orf50Q9HD87 102 aa15.14■□□□□ 0.01
VPS33B-202ENST00000535906 PODNQ7Z5L7 613 aa15.13■□□□□ 0.01
VPS33B-202ENST00000535906 ZFPM1Q8IX07 1006 aa15.13■□□□□ 0.01
VPS33B-202ENST00000535906 DISC1Q9NRI5 854 aa15.13■□□□□ 0.01
VPS33B-202ENST00000535906 PCDHAC2Q9Y5I4 1007 aa15.13■□□□□ 0.01
VPS33B-202ENST00000535906 GTPBP6O43824 516 aaPredicted RBP15.13■□□□□ 0.01
VPS33B-202ENST00000535906 TUBB4AP04350 444 aa15.13■□□□□ 0.01
VPS33B-202ENST00000535906 SNHG28P0DPA3 235 aa15.13■□□□□ 0.01
VPS33B-202ENST00000535906 GNA11P29992 359 aa15.13■□□□□ 0.01
VPS33B-202ENST00000535906 TXLNAP40222 546 aa15.13■□□□□ 0.01
VPS33B-202ENST00000535906 NAALADL2Q58DX5 795 aa15.13■□□□□ 0.01
VPS33B-202ENST00000535906 SPATA1Q5VX52 437 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms